Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0007541

Physical Location & Seq

Genomic Coordinates Forward (+)

21601200 .. 21604446

Gene Structure 3247 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG105200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGTCCACAGATCGAGGCTTGGAAAGTGGCAGAGTGGGAAGCTCAGCTCGACAACGCCGGAGCTCAGCTCGACTTTCCGCCGTCCTTCGCTCCAAAATCTTCGATATCCGCTTTGCAGAGCCCCAAAACCCAAGTAAATATCATGTCATAGACAAACCGAGCTCAGCTGGACTACGCCGGAGCTCAGCCCGGTCACATTCAAGATCAATTTCACCATGGAGGTACAATGATGCTATCTATTTACTGAAAAGGCTGCTGAATTGTTTCACTCGTGATGGTAGAAGAGGATACTGGACACTACGGTTATCAATTGATTTGGAGCACATGGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004527 GO:0004536 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0008150 GO:0008152 GO:0008409 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0016888 GO:0016893 GO:0017108 GO:0022402 GO:0022414 GO:0033554 GO:0034641 GO:0036297 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048256 GO:0048285 GO:0050896 GO:0051276 GO:0051321 GO:0051716 GO:0061982 GO:0070192 GO:0070336 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0098813 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

HIRAN VRR_NUC

Protein Analysis

110

Amino Acids

12.64

Weight (kDa)

11.36

Isoelectric Point (pI)

71.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0007541)

Species	Orthologous Gene IDs
pyrus_communis	pycom15g03570
rosa_chinensis	RchiOBHm_Chr1g0330711
rosa_multiflora	Rmu_sc0002725.1_g000018 Rmu_sc0004826.1_g000001 Rmu_sc0012388.1_g000004 Rmu_sc0032321.1_g000001
rosa_roxburghii	Rroxscaffold_2G00084840 Rroxscaffold_2G00084850
rosa_rugosa	Rorug02G0523300
rosa_samantha	Rh1AG108100 Rh1AG109100 Rh1AG109300 Rh1AG110400 Rh1AG111300 Rh1CG104100 Rh1CG105000 Rh1CG105200 Rh1CG106700 Rh1DG114200 Rh1DG114800 Rh1DG115700 Rh2BG601800 Rh2CG572500 Rh2DG612200
rosa_wichuraiana	Rw4G012620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	78, 109
AfaI	GTAC	1 cut(s)	224
AgsI	TTSAA	1 cut(s)	201
AluBI	AGCT	7 cut(s)	42, 47, 63, 68, 162, 167, 183
AluI	AGCT	7 cut(s)	42, 47, 63, 68, 162, 167, 183
Alw21I	GWGCWC	4 cut(s)	65, 164, 185, 324
ApeKI	GCWGC	1 cut(s)	253
Asp700I	GAANNNNTTC	1 cut(s)	263
AsuC2I	CCSGG	1 cut(s)	190
AsuHPI	GGTGA	1 cut(s)	204
BanII	GRGCYC	4 cut(s)	65, 123, 164, 185
BauI	CACGAG	1 cut(s)	270
Bbv12I	GWGCWC	4 cut(s)	65, 164, 185, 324
BbvI	GCAGC	1 cut(s)	240
BccI	CCATC	1 cut(s)	269
BceAI	ACGGC	1 cut(s)	65
BciVI	GTATCC	1 cut(s)	281
BcnI	CCSGG	1 cut(s)	190
BfaI	CTAG	1 cut(s)	331
BfuI	GTATCC	1 cut(s)	281
BisI	GCNGC	1 cut(s)	254
BlpI	GCTNAGC	4 cut(s)	43, 64, 163, 184
BlsI	GCNGC	1 cut(s)	255
Bme1390I	CCNGG	1 cut(s)	190
BmrFI	CCNGG	1 cut(s)	190
BmsI	GCATC	1 cut(s)	220
BplI	GAGNNNNNCTC	2 cut(s)	52, 84
Bpu1102I	GCTNAGC	4 cut(s)	43, 64, 163, 184
BpuMI	CCSGG	1 cut(s)	190
BsaJI	CCNNGG	1 cut(s)	215
Bse1I	ACTGG	1 cut(s)	296
BseDI	CCNNGG	1 cut(s)	215
BseMII	CTCAG	4 cut(s)	57, 78, 177, 198
BseNI	ACTGG	1 cut(s)	296
BseXI	GCAGC	1 cut(s)	240
BsiHKAI	GWGCWC	4 cut(s)	65, 164, 185, 324
BsiSI	CCGG	3 cut(s)	58, 178, 190
Bsp1286I	GDGCHC	5 cut(s)	65, 123, 164, 185, 324
Bsp143I	GATC	2 cut(s)	10, 203
Bsp1720I	GCTNAGC	4 cut(s)	43, 64, 163, 184
Bsp19I	CCATGG	1 cut(s)	215
BspACI	CCGC	2 cut(s)	78, 109
BspCNI	CTCAG	4 cut(s)	56, 77, 176, 197
BsrI	ACTGG	1 cut(s)	296
BssECI	CCNNGG	1 cut(s)	215
BssMI	GATC	2 cut(s)	10, 203
BssSI	CACGAG	1 cut(s)	270
BssT1I	CCWWGG	1 cut(s)	215
Bst2BI	CACGAG	1 cut(s)	270
Bst4CI	ACNGT	1 cut(s)	303
Bst6I	CTCTTC	1 cut(s)	277
BstDEI	CTNAG	4 cut(s)	43, 64, 163, 184
BstDSI	CCRYGG	1 cut(s)	215
BstKTI	GATC	2 cut(s)	13, 206
BstMBI	GATC	2 cut(s)	10, 203
BstSCI	CCNGG	1 cut(s)	188
BstV1I	GCAGC	1 cut(s)	240
BsuI	GTATCC	1 cut(s)	281
BtgI	CCRYGG	1 cut(s)	215
Csp6I	GTAC	1 cut(s)	223
CviAII	CATG	3 cut(s)	143, 216, 325
CviQI	GTAC	1 cut(s)	223
DdeI	CTNAG	4 cut(s)	43, 64, 163, 184
DpnI	GATC	2 cut(s)	12, 205
DpnII	GATC	2 cut(s)	10, 203
Eam1104I	CTCTTC	1 cut(s)	277
EarI	CTCTTC	1 cut(s)	277
EciI	GGCGGA	1 cut(s)	67
Ecl136II	GAGCTC	3 cut(s)	63, 162, 183
Eco130I	CCWWGG	1 cut(s)	215
Eco24I	GRGCYC	4 cut(s)	65, 123, 164, 185
Eco32I	GATATC	1 cut(s)	106
Eco53kI	GAGCTC	3 cut(s)	63, 162, 183
EcoICRI	GAGCTC	3 cut(s)	63, 162, 183
EcoRV	GATATC	1 cut(s)	106
EcoT14I	CCWWGG	1 cut(s)	215
EcoT38I	GRGCYC	4 cut(s)	65, 123, 164, 185
ErhI	CCWWGG	1 cut(s)	215
FaeI	CATG	3 cut(s)	146, 219, 328
FaiI	YATR	4 cut(s)	144, 149, 217, 326
FatI	CATG	3 cut(s)	142, 215, 324
Fnu4HI	GCNGC	1 cut(s)	254
FriOI	GRGCYC	4 cut(s)	65, 123, 164, 185
Fsp4HI	GCNGC	1 cut(s)	254
FspBI	CTAG	1 cut(s)	331
GluI	GCNGC	1 cut(s)	254
HapII	CCGG	3 cut(s)	58, 178, 190
Hin1II	CATG	3 cut(s)	146, 219, 328
HpaII	CCGG	3 cut(s)	58, 178, 190
HphI	GGTGA	1 cut(s)	204
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188III	TCNNGA	2 cut(s)	201, 272
Hpy8I	GTNNAC	1 cut(s)	6
HpyAV	CCTTC	1 cut(s)	95
HpyCH4III	ACNGT	1 cut(s)	303
HpyCH4V	TGCA	1 cut(s)	116
HpyF3I	CTNAG	4 cut(s)	43, 64, 163, 184
Hsp92II	CATG	3 cut(s)	146, 219, 328
Kzo9I	GATC	2 cut(s)	10, 203
LmnI	GCTCC	4 cut(s)	60, 95, 180, 319
LpnPI	CCDG	5 cut(s)	71, 153, 191, 203, 277
Lsp1109I	GCAGC	1 cut(s)	240
LweI	GCATC	1 cut(s)	220
MaeI	CTAG	1 cut(s)	331
MaeIII	GTNAC	1 cut(s)	192
MalI	GATC	2 cut(s)	12, 205
MboI	GATC	2 cut(s)	10, 203
MboII	GAAGA	2 cut(s)	91, 294
MfeI	CAATTG	1 cut(s)	309
MhlI	GDGCHC	5 cut(s)	65, 123, 164, 185, 324
MluCI	AATT	3 cut(s)	207, 259, 309
MnlI	CCTC	3 cut(s)	8, 213, 278
MroXI	GAANNNNTTC	1 cut(s)	263
MspA1I	CMGCKG	1 cut(s)	167
MspI	CCGG	3 cut(s)	58, 178, 190
MspR9I	CCNGG	1 cut(s)	190
MunI	CAATTG	1 cut(s)	309
NciI	CCSGG	1 cut(s)	190
NcoI	CCATGG	1 cut(s)	215
NdeII	GATC	2 cut(s)	10, 203
NlaIII	CATG	3 cut(s)	146, 219, 328
NmuCI	GTSAC	1 cut(s)	192
PdmI	GAANNNNTTC	1 cut(s)	263
PkrI	GCNGC	1 cut(s)	255
Psp124BI	GAGCTC	3 cut(s)	65, 164, 185
PvuII	CAGCTG	1 cut(s)	167
RsaI	GTAC	1 cut(s)	224
RsaNI	GTAC	1 cut(s)	223
SacI	GAGCTC	3 cut(s)	65, 164, 185
SatI	GCNGC	1 cut(s)	254
Sau3AI	GATC	2 cut(s)	10, 203
ScrFI	CCNGG	1 cut(s)	190
SduI	GDGCHC	5 cut(s)	65, 123, 164, 185, 324
SetI	ASST	8 cut(s)	44, 49, 65, 70, 164, 169, 185, 224
SfaNI	GCATC	1 cut(s)	220
Sse9I	AATT	3 cut(s)	207, 259, 309
SsiI	CCGC	2 cut(s)	78, 109
SspMI	CTAG	1 cut(s)	331
SstI	GAGCTC	3 cut(s)	65, 164, 185
StyD4I	CCNGG	1 cut(s)	188
StyI	CCWWGG	1 cut(s)	215
TaaI	ACNGT	1 cut(s)	303
TaqI	TCGA	4 cut(s)	13, 49, 70, 102
TasI	AATT	3 cut(s)	207, 259, 309
TseFI	GTSAC	1 cut(s)	192
TseI	GCWGC	1 cut(s)	253
Tsp45I	GTSAC	1 cut(s)	192
XmnI	GAANNNNTTC	1 cut(s)	263
XspI	CTAG	1 cut(s)	331

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.