Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0032321.1

Orthogroup ID

OG0007541

Physical Location & Seq

Genomic Coordinates Reverse (-)

1077 .. 2000

Gene Structure 924 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0032321.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

atgaaaatccaagtgagtgatgcagctgtgcagcttcttggaagtcttggctacgattcaaactacggtgctaggtcagtgaagctagtgattcagcaatatgtagaaaataagcttgccaagggcatcttgaggggagagttcaaagaagaagacaccattttggtcgacacagagggcggccctgtgagtttcaccaacaccgtgatcattatgacctcaaatgttggttcacagtacatacttaacggagatgatgaagtatcgccaaaggagttgggtcatgaaactataaagcagcgggtcatggaggctgcaaggtccatatttcgccctgagttcatgaatcgggttgatgagtacatagttttccatcccttagaccgtgatcagataaacaacattgtcaagatacagctgtgcagcttcttggaaatctcggctacaatccaaactacgggagctaggccaatcaagcgagtgattcagcaatatgtggaaaatgagcttgccaagggcattttgaggggagagttcaaagaagaagacaccactttggtcgacacagaggtcacagcgtttgccaatggccagctaccccagcaaaagctagtcttcaagatgcttgaaactggttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006996 GO:0008150 GO:0009266 GO:0009408 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko04213 map04213

Pfam Domains

Protein Families

AAA AAA_2 ClpB_D2-small Clp_N

Protein Analysis

212

Amino Acids

23.79

Weight (kDa)

5.01

Isoelectric Point (pI)

26.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007541)

Species	Orthologous Gene IDs
pyrus_communis	pycom15g03570
rosa_chinensis	RchiOBHm_Chr1g0330711
rosa_multiflora	Rmu_sc0002725.1_g000018 Rmu_sc0004826.1_g000001 Rmu_sc0012388.1_g000004 Rmu_sc0032321.1_g000001
rosa_roxburghii	Rroxscaffold_2G00084840 Rroxscaffold_2G00084850
rosa_rugosa	Rorug02G0523300
rosa_samantha	Rh1AG108100 Rh1AG109100 Rh1AG109300 Rh1AG110400 Rh1AG111300 Rh1CG104100 Rh1CG105000 Rh1CG105200 Rh1CG106700 Rh1DG114200 Rh1DG114800 Rh1DG115700 Rh2BG601800 Rh2CG572500 Rh2DG612200
rosa_wichuraiana	Rw4G012620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	569
AccI	GTMKAC	2 cut(s)	168, 561
AciI	CCGC	2 cut(s)	180, 301
AcoI	YGGCCR	1 cut(s)	589
AfaI	GTAC	2 cut(s)	239, 362
AfiI	CCNNNNNNNGG	1 cut(s)	457
AgsI	TTSAA	5 cut(s)	60, 145, 538, 619, 629
AoxI	GGCC	3 cut(s)	181, 467, 589
ApeKI	GCWGC	5 cut(s)	23, 31, 298, 314, 423
AspS9I	GGNCC	2 cut(s)	182, 321
AsuHPI	GGTGA	1 cut(s)	187
AvaII	GGWCC	1 cut(s)	321
BaeI	ACNNNNGTAYC	2 cut(s)	404, 437
BalI	TGGCCA	1 cut(s)	591
BbsI	GAAGAC	3 cut(s)	159, 552, 607
BbvI	GCAGC	5 cut(s)	35, 43, 301, 310, 435
BccI	CCATC	1 cut(s)	381
BclI	TGATCA	2 cut(s)	207, 388
BfaI	CTAG	4 cut(s)	72, 86, 465, 611
BisI	GCNGC	6 cut(s)	24, 32, 181, 299, 315, 424
BlsI	GCNGC	6 cut(s)	25, 33, 182, 300, 316, 425
Bme18I	GGWCC	1 cut(s)	321
BmgT120I	GGNCC	2 cut(s)	182, 321
BmsI	GCATC	3 cut(s)	10, 135, 612
BpiI	GAAGAC	3 cut(s)	159, 552, 607
BpuEI	CTTGAG	1 cut(s)	151
BsaJI	CCNNGG	2 cut(s)	120, 513
Bsc4I	CCNNNNNNNGG	1 cut(s)	457
Bse1I	ACTGG	1 cut(s)	637
BseDI	CCNNGG	2 cut(s)	120, 513
BseGI	GGATG	1 cut(s)	373
BseLI	CCNNNNNNNGG	1 cut(s)	457
BseMII	CTCAG	1 cut(s)	327
BseNI	ACTGG	1 cut(s)	637
BseXI	GCAGC	5 cut(s)	35, 43, 301, 310, 435
BseYI	CCCAGC	1 cut(s)	600
BsgI	GTGCAG	2 cut(s)	50, 442
BshFI	GGCC	3 cut(s)	183, 469, 591
BslI	CCNNNNNNNGG	1 cut(s)	457
BsnI	GGCC	3 cut(s)	183, 469, 591
Bsp143I	GATC	2 cut(s)	207, 388
BspACI	CCGC	2 cut(s)	180, 301
BspANI	GGCC	3 cut(s)	183, 469, 591
BspCNI	CTCAG	1 cut(s)	328
BspHI	TCATGA	2 cut(s)	283, 342
BsrI	ACTGG	1 cut(s)	637
BssECI	CCNNGG	2 cut(s)	120, 513
BssMI	GATC	2 cut(s)	207, 388
BssT1I	CCWWGG	2 cut(s)	120, 513
Bst4CI	ACNGT	4 cut(s)	68, 205, 237, 386
BstC8I	GCNNGC	3 cut(s)	117, 510, 593
BstDEI	CTNAG	2 cut(s)	336, 379
BstF5I	GGATG	1 cut(s)	373
BstKTI	GATC	2 cut(s)	210, 391
BstMBI	GATC	2 cut(s)	207, 388
BstMWI	GCNNNNNNNGC	2 cut(s)	475, 601
BstV1I	GCAGC	5 cut(s)	35, 43, 301, 310, 435
BstV2I	GAAGAC	3 cut(s)	159, 552, 607
BsuRI	GGCC	3 cut(s)	183, 469, 591
BtsCI	GGATG	1 cut(s)	373
BtsIMutI	CAGTG	1 cut(s)	84
Cac8I	GCNNGC	3 cut(s)	117, 510, 593
CciI	TCATGA	2 cut(s)	283, 342
Cfr13I	GGNCC	2 cut(s)	182, 321
Csp6I	GTAC	2 cut(s)	238, 361
CviAII	CATG	3 cut(s)	284, 307, 343
CviQI	GTAC	2 cut(s)	238, 361
DdeI	CTNAG	2 cut(s)	336, 379
DpnI	GATC	2 cut(s)	209, 390
DpnII	GATC	2 cut(s)	207, 388
DrdI	GACNNNNNNGTC	1 cut(s)	569
DseDI	GACNNNNNNGTC	1 cut(s)	569
EaeI	YGGCCR	1 cut(s)	589
Eco130I	CCWWGG	2 cut(s)	120, 513
Eco47I	GGWCC	1 cut(s)	321
EcoT14I	CCWWGG	2 cut(s)	120, 513
ErhI	CCWWGG	2 cut(s)	120, 513
FaeI	CATG	3 cut(s)	287, 310, 346
FalI	AAGNNNNNCTT	4 cut(s)	113, 145, 599, 631
FatI	CATG	3 cut(s)	283, 306, 342
FauI	CCCGC	1 cut(s)	294
FbaI	TGATCA	2 cut(s)	207, 388
FblI	GTMKAC	2 cut(s)	168, 561
Fnu4HI	GCNGC	6 cut(s)	24, 32, 181, 299, 315, 424
FokI	GGATG	1 cut(s)	360
Fsp4HI	GCNGC	6 cut(s)	24, 32, 181, 299, 315, 424
FspBI	CTAG	4 cut(s)	72, 86, 465, 611
GluI	GCNGC	6 cut(s)	24, 32, 181, 299, 315, 424
GsaI	CCCAGC	1 cut(s)	604
HaeIII	GGCC	3 cut(s)	183, 469, 591
Hin1II	CATG	3 cut(s)	287, 310, 346
HincII	GTYRAC	2 cut(s)	169, 562
HindII	GTYRAC	2 cut(s)	169, 562
HindIII	AAGCTT	1 cut(s)	113
HinfI	GANTC	4 cut(s)	56, 91, 346, 484
HphI	GGTGA	1 cut(s)	187
Hpy166II	GTNNAC	3 cut(s)	169, 233, 562
Hpy188I	TCNGA	1 cut(s)	393
Hpy188III	TCNNGA	5 cut(s)	130, 284, 343, 409, 619
Hpy8I	GTNNAC	3 cut(s)	169, 233, 562
HpyCH4III	ACNGT	4 cut(s)	68, 205, 237, 386
HpyCH4V	TGCA	4 cut(s)	23, 31, 317, 423
HpyF10VI	GCNNNNNNNGC	2 cut(s)	475, 601
HpyF3I	CTNAG	2 cut(s)	336, 379
Hsp92II	CATG	3 cut(s)	287, 310, 346
Ksp22I	TGATCA	2 cut(s)	207, 388
Kzo9I	GATC	2 cut(s)	207, 388
LmnI	GCTCC	1 cut(s)	461
LpnPI	CCDG	5 cut(s)	198, 348, 605, 614, 618
Lsp1109I	GCAGC	5 cut(s)	35, 43, 301, 310, 435
LweI	GCATC	3 cut(s)	10, 135, 612
MaeI	CTAG	4 cut(s)	72, 86, 465, 611
MaeIII	GTNAC	1 cut(s)	571
MalI	GATC	2 cut(s)	209, 390
MboI	GATC	2 cut(s)	207, 388
MboII	GAAGA	5 cut(s)	161, 164, 554, 557, 607
MlsI	TGGCCA	1 cut(s)	591
MluNI	TGGCCA	1 cut(s)	591
MnlI	CCTC	6 cut(s)	126, 169, 229, 304, 519, 562
Mox20I	TGGCCA	1 cut(s)	591
MscI	TGGCCA	1 cut(s)	591
MseI	TTAA	2 cut(s)	246, 637
Msp20I	TGGCCA	1 cut(s)	591
MspA1I	CMGCKG	3 cut(s)	26, 301, 418
MwoI	GCNNNNNNNGC	2 cut(s)	475, 601
NdeII	GATC	2 cut(s)	207, 388
NlaIII	CATG	3 cut(s)	287, 310, 346
NmeAIII	GCCGAG	1 cut(s)	419
NmuCI	GTSAC	1 cut(s)	571
PagI	TCATGA	2 cut(s)	283, 342
PfeI	GAWTC	4 cut(s)	56, 91, 346, 484
PkrI	GCNGC	6 cut(s)	25, 33, 182, 300, 316, 425
PspFI	CCCAGC	1 cut(s)	600
PspPI	GGNCC	2 cut(s)	182, 321
PvuII	CAGCTG	2 cut(s)	26, 418
RsaI	GTAC	2 cut(s)	239, 362
RsaNI	GTAC	2 cut(s)	238, 361
SalI	GTCGAC	2 cut(s)	167, 560
SaqAI	TTAA	2 cut(s)	246, 637
SatI	GCNGC	6 cut(s)	24, 32, 181, 299, 315, 424
Sau3AI	GATC	2 cut(s)	207, 388
Sau96I	GGNCC	2 cut(s)	182, 321
SfaNI	GCATC	3 cut(s)	10, 135, 612
SinI	GGWCC	1 cut(s)	321
SmlI	CTYRAG	1 cut(s)	130
SmoI	CTYRAG	1 cut(s)	130
SsiI	CCGC	2 cut(s)	180, 301
SspMI	CTAG	4 cut(s)	72, 86, 465, 611
StyI	CCWWGG	2 cut(s)	120, 513
TaaI	ACNGT	4 cut(s)	68, 205, 237, 386
TaqI	TCGA	2 cut(s)	168, 561
TatI	WGTACW	2 cut(s)	237, 360
TauI	GCSGC	1 cut(s)	183
TfiI	GAWTC	4 cut(s)	56, 91, 346, 484
Tru1I	TTAA	2 cut(s)	246, 637
Tru9I	TTAA	2 cut(s)	246, 637
TscAI	CASTG	1 cut(s)	84
TseFI	GTSAC	1 cut(s)	571
TseI	GCWGC	5 cut(s)	23, 31, 298, 314, 423
Tsp45I	GTSAC	1 cut(s)	571
TspDTI	ATGAA	5 cut(s)	17, 273, 300, 331, 359
TspGWI	ACGGA	1 cut(s)	264
TspRI	CASTG	1 cut(s)	84
VpaK11BI	GGWCC	1 cut(s)	321
XmiI	GTMKAC	2 cut(s)	168, 561
XspI	CTAG	4 cut(s)	72, 86, 465, 611

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.