Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004826.1

Orthogroup ID

OG0007541

Physical Location & Seq

Genomic Coordinates Reverse (-)

1662 .. 2640

Gene Structure 979 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004826.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

atggaagctgctgaaagggcatatgacctaagtcgtgctactgagctcaaacatggaactctaatgtccctgcaacgccacttagtagaggctgagaaaaacctttctgagtaccaaaagtctggaaaatcttttctacgagaagaggtcactgatcttgatattgctgagatgaaccaggtaaaagattgggtgaagcaaaagaaaatcgagcttcattatacaaaggaagctgtggagcttcttgtgggggtgttgagaggtgatttcaatgaggaggatgcgatcattgttgatgctgaggtgtccccatccgccaaaaatattcctccgcagaagaagttgcgcatctggaaattggagaacgcttattctagtgtagatgacataatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04213 map04213

Pfam Domains

Protein Families

AAA AAA_2 ClpB_D2-small Clp_N

Protein Analysis

131

Amino Acids

15.03

Weight (kDa)

5.14

Isoelectric Point (pI)

42.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007541)

Species	Orthologous Gene IDs
pyrus_communis	pycom15g03570
rosa_chinensis	RchiOBHm_Chr1g0330711
rosa_multiflora	Rmu_sc0002725.1_g000018 Rmu_sc0004826.1_g000001 Rmu_sc0012388.1_g000004 Rmu_sc0032321.1_g000001
rosa_roxburghii	Rroxscaffold_2G00084840 Rroxscaffold_2G00084850
rosa_rugosa	Rorug02G0523300
rosa_samantha	Rh1AG108100 Rh1AG109100 Rh1AG109300 Rh1AG110400 Rh1AG111300 Rh1CG104100 Rh1CG105000 Rh1CG105200 Rh1CG106700 Rh1DG114200 Rh1DG114800 Rh1DG115700 Rh2BG601800 Rh2CG572500 Rh2DG612200
rosa_wichuraiana	Rw4G012620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	347
AciI	CCGC	2 cut(s)	315, 332
AfaI	GTAC	1 cut(s)	113
AgsI	TTSAA	1 cut(s)	271
AjnI	CCWGG	1 cut(s)	177
AluBI	AGCT	5 cut(s)	8, 46, 214, 233, 241
AluI	AGCT	5 cut(s)	8, 46, 214, 233, 241
Alw21I	GWGCWC	1 cut(s)	48
ApeKI	GCWGC	1 cut(s)	8
AspLEI	GCGC	1 cut(s)	348
AsuHPI	GGTGA	2 cut(s)	205, 275
BanII	GRGCYC	1 cut(s)	48
Bbv12I	GWGCWC	1 cut(s)	48
BbvCI	CCTCAGC	1 cut(s)	300
BccI	CCATC	1 cut(s)	319
BciT130I	CCWGG	1 cut(s)	179
BfaI	CTAG	1 cut(s)	375
BisI	GCNGC	1 cut(s)	9
BlsI	GCNGC	1 cut(s)	10
Bme1390I	CCNGG	1 cut(s)	179
BmrFI	CCNGG	1 cut(s)	179
BmsI	GCATC	3 cut(s)	271, 286, 357
BoxI	GACNNNNGTC	1 cut(s)	30
Bpu10I	CCTNAGC	1 cut(s)	300
BseBI	CCWGG	1 cut(s)	179
BseGI	GGATG	2 cut(s)	286, 311
BseMII	CTCAG	5 cut(s)	33, 84, 99, 159, 291
BseRI	GAGGAG	1 cut(s)	290
BsiHKAI	GWGCWC	1 cut(s)	48
BslFI	GGGAC	2 cut(s)	52, 292
BsmFI	GGGAC	2 cut(s)	52, 292
Bsp1286I	GDGCHC	1 cut(s)	48
Bsp143I	GATC	2 cut(s)	154, 285
BspACI	CCGC	2 cut(s)	315, 332
BspCNI	CTCAG	5 cut(s)	34, 85, 100, 160, 292
BssMI	GATC	2 cut(s)	154, 285
Bst2UI	CCWGG	1 cut(s)	179
Bst6I	CTCTTC	1 cut(s)	138
BstDEI	CTNAG	7 cut(s)	29, 42, 82, 93, 108, 168, 300
BstF5I	GGATG	2 cut(s)	286, 311
BstHHI	GCGC	1 cut(s)	348
BstKTI	GATC	2 cut(s)	157, 288
BstMBI	GATC	2 cut(s)	154, 285
BstMWI	GCNNNNNNNGC	1 cut(s)	17
BstNI	CCWGG	1 cut(s)	179
BstPAI	GACNNNNGTC	1 cut(s)	30
BstSCI	CCNGG	1 cut(s)	177
BstXI	CCANNNNNNTGG	1 cut(s)	122
BtsCI	GGATG	2 cut(s)	286, 311
BtsIMutI	CAGTG	1 cut(s)	150
CfoI	GCGC	1 cut(s)	348
CsiI	ACCWGGT	1 cut(s)	177
Csp6I	GTAC	1 cut(s)	112
CviAII	CATG	1 cut(s)	53
CviJI	RGCY	6 cut(s)	8, 46, 92, 214, 233, 241
CviKI_1	RGCY	6 cut(s)	8, 46, 92, 214, 233, 241
CviQI	GTAC	1 cut(s)	112
DdeI	CTNAG	7 cut(s)	29, 42, 82, 93, 108, 168, 300
DpnI	GATC	2 cut(s)	156, 287
DpnII	GATC	2 cut(s)	154, 285
Eam1104I	CTCTTC	1 cut(s)	138
EarI	CTCTTC	1 cut(s)	138
EciI	GGCGGA	1 cut(s)	304
Ecl136II	GAGCTC	1 cut(s)	46
Eco24I	GRGCYC	1 cut(s)	48
Eco53kI	GAGCTC	1 cut(s)	46
EcoICRI	GAGCTC	1 cut(s)	46
EcoRII	CCWGG	1 cut(s)	177
EcoT38I	GRGCYC	1 cut(s)	48
FaeI	CATG	1 cut(s)	56
FaiI	YATR	5 cut(s)	22, 24, 54, 222, 389
FaqI	GGGAC	2 cut(s)	52, 292
FatI	CATG	1 cut(s)	52
FauNDI	CATATG	1 cut(s)	22
Fnu4HI	GCNGC	1 cut(s)	9
FokI	GGATG	2 cut(s)	293, 298
FriOI	GRGCYC	1 cut(s)	48
Fsp4HI	GCNGC	1 cut(s)	9
FspBI	CTAG	1 cut(s)	375
FspI	TGCGCA	1 cut(s)	347
GlaI	GCGC	1 cut(s)	347
GluI	GCNGC	1 cut(s)	9
HhaI	GCGC	1 cut(s)	348
Hin1II	CATG	1 cut(s)	56
Hin6I	GCGC	1 cut(s)	346
HinP1I	GCGC	1 cut(s)	346
HphI	GGTGA	2 cut(s)	205, 275
Hpy188I	TCNGA	1 cut(s)	109
Hpy188III	TCNNGA	3 cut(s)	123, 158, 352
HpyCH4V	TGCA	1 cut(s)	73
HpyF10VI	GCNNNNNNNGC	1 cut(s)	17
HpyF3I	CTNAG	7 cut(s)	29, 42, 82, 93, 108, 168, 300
Hsp92II	CATG	1 cut(s)	56
HspAI	GCGC	1 cut(s)	346
Kzo9I	GATC	2 cut(s)	154, 285
LmnI	GCTCC	1 cut(s)	238
LpnPI	CCDG	5 cut(s)	83, 108, 164, 191, 337
LweI	GCATC	3 cut(s)	271, 286, 357
MabI	ACCWGGT	1 cut(s)	177
MaeI	CTAG	1 cut(s)	375
MaeIII	GTNAC	1 cut(s)	148
MalI	GATC	2 cut(s)	156, 287
MboI	GATC	2 cut(s)	154, 285
MboII	GAAGA	2 cut(s)	155, 349
MhlI	GDGCHC	1 cut(s)	48
MluCI	AATT	2 cut(s)	356, 390
MnlI	CCTC	7 cut(s)	82, 139, 254, 268, 271, 295, 339
MspR9I	CCNGG	1 cut(s)	179
MvaI	CCWGG	1 cut(s)	179
MwoI	GCNNNNNNNGC	1 cut(s)	17
NdeI	CATATG	1 cut(s)	22
NdeII	GATC	2 cut(s)	154, 285
NlaIII	CATG	1 cut(s)	56
NmuCI	GTSAC	1 cut(s)	148
NsbI	TGCGCA	1 cut(s)	347
PkrI	GCNGC	1 cut(s)	10
PshAI	GACNNNNGTC	1 cut(s)	30
Psp124BI	GAGCTC	1 cut(s)	48
Psp6I	CCWGG	1 cut(s)	177
PspGI	CCWGG	1 cut(s)	177
RsaI	GTAC	1 cut(s)	113
RsaNI	GTAC	1 cut(s)	112
SacI	GAGCTC	1 cut(s)	48
SatI	GCNGC	1 cut(s)	9
Sau3AI	GATC	2 cut(s)	154, 285
ScrFI	CCNGG	1 cut(s)	179
SduI	GDGCHC	1 cut(s)	48
SexAI	ACCWGGT	1 cut(s)	177
SfaNI	GCATC	3 cut(s)	271, 286, 357
Sse9I	AATT	2 cut(s)	356, 390
SsiI	CCGC	2 cut(s)	315, 332
SspI	AATATT	1 cut(s)	325
SspMI	CTAG	1 cut(s)	375
SstI	GAGCTC	1 cut(s)	48
StyD4I	CCNGG	1 cut(s)	177
TaqI	TCGA	1 cut(s)	210
TasI	AATT	2 cut(s)	356, 390
TscAI	CASTG	1 cut(s)	157
TseFI	GTSAC	1 cut(s)	148
TseI	GCWGC	1 cut(s)	8
Tsp45I	GTSAC	1 cut(s)	148
TspDTI	ATGAA	2 cut(s)	188, 206
TspRI	CASTG	1 cut(s)	157
XspI	CTAG	1 cut(s)	375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.