Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0007541

Physical Location & Seq

Genomic Coordinates Reverse (-)

7308367 .. 7308874

Gene Structure 508 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00084840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGAATCTGGTTGATGAGTACATAGTTTTCCAGCCCTTGGACCATGATCAGATAAACAACATTGTCAAGATACAGTTGGAACGAGTCCAAAAGAGAATTGCAGACCGCAAGATGAAGATCCAAGTGAGCGAGGCAGCTGTGCAGCTTGGAAATCTCGGCTACTATCCAAACTACGGTGCTAGGCCATCAAAAAATGAGCTTGCCAAGGGCATCTTGAGAGGAGTGTTCAAAGAAGAAGACACCATTTTGGTCGACACAAAGGTCACGGCGTTTGCCAATGGCCAGCTACCCCAGCAAAAGTTATTCTTCAAGACACTTGAAACCGGTTCAGAATCTGCTGCAACAAAGAACAAAGAAGCTTTGTCGGGGGCCGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006996 GO:0008150 GO:0009266 GO:0009408 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko04213 map04213

Pfam Domains

Protein Families

AAA AAA_2 ClpB_D2-small Clp_N

Protein Analysis

125

Amino Acids

13.97

Weight (kDa)

8.83

Isoelectric Point (pI)

23.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ClpB_D2-small	PF10431	13 - 77	3.3e-13	C-terminal, D2-small domain, of ClpB protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0007541)

Species	Orthologous Gene IDs
pyrus_communis	pycom15g03570
rosa_chinensis	RchiOBHm_Chr1g0330711
rosa_multiflora	Rmu_sc0002725.1_g000018 Rmu_sc0004826.1_g000001 Rmu_sc0012388.1_g000004 Rmu_sc0032321.1_g000001
rosa_roxburghii	Rroxscaffold_2G00084840 Rroxscaffold_2G00084850
rosa_rugosa	Rorug02G0523300
rosa_samantha	Rh1AG108100 Rh1AG109100 Rh1AG109300 Rh1AG110400 Rh1AG111300 Rh1CG104100 Rh1CG105000 Rh1CG105200 Rh1CG106700 Rh1DG114200 Rh1DG114800 Rh1DG115700 Rh2BG601800 Rh2CG572500 Rh2DG612200
rosa_wichuraiana	Rw4G012620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	260
AccB7I	CCANNNNNTGG	1 cut(s)	37
AccI	GTMKAC	1 cut(s)	252
AciI	CCGC	1 cut(s)	106
AclWI	GGATC	1 cut(s)	112
AcoI	YGGCCR	1 cut(s)	280
AfaI	GTAC	1 cut(s)	20
AfiI	CCNNNNNNNGG	2 cut(s)	37, 173
AgeI	ACCGGT	1 cut(s)	323
AgsI	TTSAA	3 cut(s)	229, 310, 320
AluBI	AGCT	5 cut(s)	137, 145, 199, 286, 359
AluI	AGCT	5 cut(s)	137, 145, 199, 286, 359
AlwI	GGATC	1 cut(s)	112
AlwNI	CAGNNNCTG	1 cut(s)	335
AoxI	GGCC	3 cut(s)	182, 280, 369
ApeKI	GCWGC	3 cut(s)	134, 142, 338
AsiGI	ACCGGT	1 cut(s)	323
AspS9I	GGNCC	2 cut(s)	40, 369
AvaII	GGWCC	1 cut(s)	40
BalI	TGGCCA	1 cut(s)	282
BbsI	GAAGAC	1 cut(s)	243
BbvI	GCAGC	3 cut(s)	146, 154, 325
BccI	CCATC	1 cut(s)	193
BceAI	ACGGC	2 cut(s)	282, 356
BclI	TGATCA	1 cut(s)	46
BfaI	CTAG	1 cut(s)	180
BisI	GCNGC	3 cut(s)	135, 143, 339
BlsI	GCNGC	3 cut(s)	136, 144, 340
Bme18I	GGWCC	1 cut(s)	40
BmgT120I	GGNCC	2 cut(s)	40, 369
BmiI	GGNNCC	1 cut(s)	370
BmsI	GCATC	1 cut(s)	219
BpiI	GAAGAC	1 cut(s)	243
BpuEI	CTTGAG	1 cut(s)	235
BsaBI	GATNNNNATC	1 cut(s)	116
BsaJI	CCNNGG	2 cut(s)	36, 204
BsaWI	WCCGGW	1 cut(s)	323
Bsc4I	CCNNNNNNNGG	2 cut(s)	37, 173
Bse118I	RCCGGY	1 cut(s)	323
Bse8I	GATNNNNATC	1 cut(s)	116
BseDI	CCNNGG	2 cut(s)	36, 204
BseJI	GATNNNNATC	1 cut(s)	116
BseLI	CCNNNNNNNGG	2 cut(s)	37, 173
BseRI	GAGGAG	1 cut(s)	234
BseXI	GCAGC	3 cut(s)	146, 154, 325
BseYI	CCCAGC	1 cut(s)	291
BsgI	GTGCAG	1 cut(s)	161
BshFI	GGCC	3 cut(s)	184, 282, 371
BshTI	ACCGGT	1 cut(s)	323
BsiSI	CCGG	1 cut(s)	324
BslI	CCNNNNNNNGG	2 cut(s)	37, 173
BsnI	GGCC	3 cut(s)	184, 282, 371
Bsp143I	GATC	2 cut(s)	46, 117
BspACI	CCGC	1 cut(s)	106
BspANI	GGCC	3 cut(s)	184, 282, 371
BspLI	GGNNCC	1 cut(s)	370
BspPI	GGATC	1 cut(s)	112
BsrFI	RCCGGY	1 cut(s)	323
BssAI	RCCGGY	1 cut(s)	323
BssECI	CCNNGG	2 cut(s)	36, 204
BssMI	GATC	2 cut(s)	46, 117
BssT1I	CCWWGG	2 cut(s)	36, 204
Bst4CI	ACNGT	2 cut(s)	75, 176
BstC8I	GCNNGC	2 cut(s)	201, 284
BstKTI	GATC	2 cut(s)	49, 120
BstMBI	GATC	2 cut(s)	46, 117
BstMWI	GCNNNNNNNGC	1 cut(s)	292
BstV1I	GCAGC	3 cut(s)	146, 154, 325
BstV2I	GAAGAC	1 cut(s)	243
BstX2I	RGATCY	1 cut(s)	117
BstYI	RGATCY	1 cut(s)	117
BsuRI	GGCC	3 cut(s)	184, 282, 371
Cac8I	GCNNGC	2 cut(s)	201, 284
CaiI	CAGNNNCTG	1 cut(s)	335
Cfr10I	RCCGGY	1 cut(s)	323
Cfr13I	GGNCC	2 cut(s)	40, 369
Csp6I	GTAC	1 cut(s)	19
CspAI	ACCGGT	1 cut(s)	323
CviAII	CATG	1 cut(s)	44
CviQI	GTAC	1 cut(s)	19
DpnI	GATC	2 cut(s)	48, 119
DpnII	GATC	2 cut(s)	46, 117
DrdI	GACNNNNNNGTC	1 cut(s)	260
DseDI	GACNNNNNNGTC	1 cut(s)	260
EaeI	YGGCCR	1 cut(s)	280
Eco130I	CCWWGG	2 cut(s)	36, 204
Eco47I	GGWCC	1 cut(s)	40
EcoT14I	CCWWGG	2 cut(s)	36, 204
ErhI	CCWWGG	2 cut(s)	36, 204
FaeI	CATG	1 cut(s)	47
FaiI	YATR	2 cut(s)	23, 45
FalI	AAGNNNNNCTT	4 cut(s)	197, 229, 290, 322
FatI	CATG	1 cut(s)	43
FbaI	TGATCA	1 cut(s)	46
FblI	GTMKAC	1 cut(s)	252
Fnu4HI	GCNGC	3 cut(s)	135, 143, 339
Fsp4HI	GCNGC	3 cut(s)	135, 143, 339
FspBI	CTAG	1 cut(s)	180
GluI	GCNGC	3 cut(s)	135, 143, 339
GsaI	CCCAGC	1 cut(s)	295
HaeIII	GGCC	3 cut(s)	184, 282, 371
HapII	CCGG	1 cut(s)	324
Hin1II	CATG	1 cut(s)	47
HincII	GTYRAC	1 cut(s)	253
HindII	GTYRAC	1 cut(s)	253
HindIII	AAGCTT	1 cut(s)	357
HinfI	GANTC	3 cut(s)	4, 84, 332
HpaII	CCGG	1 cut(s)	324
Hpy166II	GTNNAC	1 cut(s)	253
Hpy188I	TCNGA	2 cut(s)	51, 331
Hpy188III	TCNNGA	3 cut(s)	67, 214, 310
Hpy8I	GTNNAC	1 cut(s)	253
HpyCH4III	ACNGT	2 cut(s)	75, 176
HpyCH4V	TGCA	3 cut(s)	101, 142, 341
HpyF10VI	GCNNNNNNNGC	1 cut(s)	292
Hsp92II	CATG	1 cut(s)	47
Ksp22I	TGATCA	1 cut(s)	46
Kzo9I	GATC	2 cut(s)	46, 117
LpnPI	CCDG	4 cut(s)	44, 296, 305, 337
Lsp1109I	GCAGC	3 cut(s)	146, 154, 325
LweI	GCATC	1 cut(s)	219
MaeI	CTAG	1 cut(s)	180
MaeIII	GTNAC	1 cut(s)	262
MalI	GATC	2 cut(s)	48, 119
MboI	GATC	2 cut(s)	46, 117
MboII	GAAGA	4 cut(s)	127, 245, 248, 298
MflI	RGATCY	1 cut(s)	117
MlsI	TGGCCA	1 cut(s)	282
MluCI	AATT	1 cut(s)	96
MluNI	TGGCCA	1 cut(s)	282
MlyI	GAGTC	1 cut(s)	93
MmeI	TCCRAC	1 cut(s)	57
MnlI	CCTC	2 cut(s)	124, 212
Mox20I	TGGCCA	1 cut(s)	282
MscI	TGGCCA	1 cut(s)	282
Msp20I	TGGCCA	1 cut(s)	282
MspA1I	CMGCKG	1 cut(s)	137
MspI	CCGG	1 cut(s)	324
MwoI	GCNNNNNNNGC	1 cut(s)	292
NdeII	GATC	2 cut(s)	46, 117
NlaIII	CATG	1 cut(s)	47
NlaIV	GGNNCC	1 cut(s)	370
NmeAIII	GCCGAG	1 cut(s)	135
NmuCI	GTSAC	1 cut(s)	262
PfeI	GAWTC	2 cut(s)	4, 332
PflMI	CCANNNNNTGG	1 cut(s)	37
PinAI	ACCGGT	1 cut(s)	323
PkrI	GCNGC	3 cut(s)	136, 144, 340
PleI	GAGTC	1 cut(s)	92
PpsI	GAGTC	1 cut(s)	92
PspFI	CCCAGC	1 cut(s)	291
PspN4I	GGNNCC	1 cut(s)	370
PspPI	GGNCC	2 cut(s)	40, 369
PstNI	CAGNNNCTG	1 cut(s)	335
PsuI	RGATCY	1 cut(s)	117
PvuII	CAGCTG	1 cut(s)	137
RsaI	GTAC	1 cut(s)	20
RsaNI	GTAC	1 cut(s)	19
SalI	GTCGAC	1 cut(s)	251
SatI	GCNGC	3 cut(s)	135, 143, 339
Sau3AI	GATC	2 cut(s)	46, 117
Sau96I	GGNCC	2 cut(s)	40, 369
SchI	GAGTC	1 cut(s)	93
SetI	ASST	6 cut(s)	139, 147, 201, 264, 288, 361
SfaNI	GCATC	1 cut(s)	219
SinI	GGWCC	1 cut(s)	40
SmlI	CTYRAG	1 cut(s)	214
SmoI	CTYRAG	1 cut(s)	214
Sse9I	AATT	1 cut(s)	96
SsiI	CCGC	1 cut(s)	106
SspMI	CTAG	1 cut(s)	180
StyI	CCWWGG	2 cut(s)	36, 204
TaaI	ACNGT	2 cut(s)	75, 176
TaqI	TCGA	1 cut(s)	252
TasI	AATT	1 cut(s)	96
TatI	WGTACW	1 cut(s)	18
TfiI	GAWTC	2 cut(s)	4, 332
TseFI	GTSAC	1 cut(s)	262
TseI	GCWGC	3 cut(s)	134, 142, 338
Tsp45I	GTSAC	1 cut(s)	262
TspDTI	ATGAA	2 cut(s)	17, 128
Van91I	CCANNNNNTGG	1 cut(s)	37
VpaK11BI	GGWCC	1 cut(s)	40
XmiI	GTMKAC	1 cut(s)	252
XspI	CTAG	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.