Belongs to the ClpA ClpB family
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| Species | Orthologous Gene IDs |
|---|---|
| pyrus_communis | pycom15g03570 |
| rosa_chinensis | RchiOBHm_Chr1g0330711 |
| rosa_multiflora | Rmu_sc0002725.1_g000018 Rmu_sc0004826.1_g000001 Rmu_sc0012388.1_g000004 Rmu_sc0032321.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00084840 Rroxscaffold_2G00084850 |
| rosa_rugosa | Rorug02G0523300 |
| rosa_samantha | Rh1AG108100 Rh1AG109100 Rh1AG109300 Rh1AG110400 Rh1AG111300 Rh1CG104100 Rh1CG105000 Rh1CG105200 Rh1CG106700 Rh1DG114200 Rh1DG114800 Rh1DG115700 Rh2BG601800 Rh2CG572500 Rh2DG612200 |
| rosa_wichuraiana | Rw4G012620 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 89 |
| AclWI | GGATC | 1 cut(s) | 151 |
| AfaI | GTAC | 1 cut(s) | 200 |
| AjnI | CCWGG | 1 cut(s) | 93 |
| AluBI | AGCT | 1 cut(s) | 133 |
| AluI | AGCT | 1 cut(s) | 133 |
| Alw21I | GWGCWC | 1 cut(s) | 135 |
| AlwI | GGATC | 1 cut(s) | 151 |
| ApeKI | GCWGC | 1 cut(s) | 125 |
| BanII | GRGCYC | 1 cut(s) | 135 |
| Bbv12I | GWGCWC | 1 cut(s) | 135 |
| BbvI | GCAGC | 1 cut(s) | 112 |
| BciT130I | CCWGG | 1 cut(s) | 95 |
| BfmI | CTRYAG | 1 cut(s) | 78 |
| BisI | GCNGC | 1 cut(s) | 126 |
| BlpI | GCTNAGC | 1 cut(s) | 129 |
| BlsI | GCNGC | 1 cut(s) | 127 |
| Bme1390I | CCNGG | 1 cut(s) | 95 |
| BmiI | GGNNCC | 1 cut(s) | 59 |
| BmrFI | CCNGG | 1 cut(s) | 95 |
| BoxI | GACNNNNGTC | 1 cut(s) | 117 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 129 |
| BsaJI | CCNNGG | 1 cut(s) | 93 |
| BseBI | CCWGG | 1 cut(s) | 95 |
| BseDI | CCNNGG | 1 cut(s) | 93 |
| BseMII | CTCAG | 4 cut(s) | 120, 171, 186, 246 |
| BseXI | GCAGC | 1 cut(s) | 112 |
| BsiHKAI | GWGCWC | 1 cut(s) | 135 |
| BslFI | GGGAC | 1 cut(s) | 139 |
| BsmFI | GGGAC | 1 cut(s) | 139 |
| Bsp1286I | GDGCHC | 1 cut(s) | 135 |
| Bsp143I | GATC | 3 cut(s) | 14, 143, 241 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 129 |
| BspACI | CCGC | 1 cut(s) | 89 |
| BspCNI | CTCAG | 4 cut(s) | 121, 172, 187, 247 |
| BspLI | GGNNCC | 1 cut(s) | 59 |
| BspPI | GGATC | 1 cut(s) | 151 |
| BssECI | CCNNGG | 1 cut(s) | 93 |
| BssMI | GATC | 3 cut(s) | 14, 143, 241 |
| Bst2UI | CCWGG | 1 cut(s) | 95 |
| Bst4CI | ACNGT | 1 cut(s) | 79 |
| Bst6I | CTCTTC | 1 cut(s) | 21 |
| BstDEI | CTNAG | 6 cut(s) | 116, 129, 169, 180, 195, 255 |
| BstKTI | GATC | 3 cut(s) | 17, 146, 244 |
| BstMBI | GATC | 3 cut(s) | 14, 143, 241 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 104 |
| BstNI | CCWGG | 1 cut(s) | 95 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 117 |
| BstSCI | CCNGG | 1 cut(s) | 93 |
| BstSFI | CTRYAG | 1 cut(s) | 78 |
| BstV1I | GCAGC | 1 cut(s) | 112 |
| BstX2I | RGATCY | 1 cut(s) | 143 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 209 |
| BstYI | RGATCY | 1 cut(s) | 143 |
| BtsIMutI | CAGTG | 1 cut(s) | 237 |
| Csp6I | GTAC | 1 cut(s) | 199 |
| CviJI | RGCY | 3 cut(s) | 98, 133, 179 |
| CviKI_1 | RGCY | 3 cut(s) | 98, 133, 179 |
| CviQI | GTAC | 1 cut(s) | 199 |
| DdeI | CTNAG | 6 cut(s) | 116, 129, 169, 180, 195, 255 |
| DpnI | GATC | 3 cut(s) | 16, 145, 243 |
| DpnII | GATC | 3 cut(s) | 14, 143, 241 |
| Eam1104I | CTCTTC | 1 cut(s) | 21 |
| EarI | CTCTTC | 1 cut(s) | 21 |
| EciI | GGCGGA | 1 cut(s) | 78 |
| Ecl136II | GAGCTC | 1 cut(s) | 133 |
| Eco24I | GRGCYC | 1 cut(s) | 135 |
| Eco53kI | GAGCTC | 1 cut(s) | 133 |
| EcoICRI | GAGCTC | 1 cut(s) | 133 |
| EcoRII | CCWGG | 1 cut(s) | 93 |
| EcoT38I | GRGCYC | 1 cut(s) | 135 |
| FaiI | YATR | 3 cut(s) | 109, 111, 141 |
| FaqI | GGGAC | 1 cut(s) | 139 |
| FauNDI | CATATG | 1 cut(s) | 109 |
| Fnu4HI | GCNGC | 1 cut(s) | 126 |
| FriOI | GRGCYC | 1 cut(s) | 135 |
| Fsp4HI | GCNGC | 1 cut(s) | 126 |
| GluI | GCNGC | 1 cut(s) | 126 |
| HinfI | GANTC | 1 cut(s) | 4 |
| Hpy166II | GTNNAC | 1 cut(s) | 265 |
| Hpy188I | TCNGA | 1 cut(s) | 196 |
| Hpy188III | TCNNGA | 3 cut(s) | 61, 210, 245 |
| Hpy8I | GTNNAC | 1 cut(s) | 265 |
| HpyAV | CCTTC | 1 cut(s) | 78 |
| HpyCH4III | ACNGT | 1 cut(s) | 79 |
| HpyCH4V | TGCA | 1 cut(s) | 160 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 104 |
| HpyF3I | CTNAG | 6 cut(s) | 116, 129, 169, 180, 195, 255 |
| Kzo9I | GATC | 3 cut(s) | 14, 143, 241 |
| LpnPI | CCDG | 6 cut(s) | 74, 80, 88, 107, 170, 195 |
| Lsp1109I | GCAGC | 1 cut(s) | 112 |
| MaeIII | GTNAC | 1 cut(s) | 235 |
| MalI | GATC | 3 cut(s) | 16, 145, 243 |
| MboI | GATC | 3 cut(s) | 14, 143, 241 |
| MboII | GAAGA | 2 cut(s) | 38, 242 |
| MflI | RGATCY | 1 cut(s) | 143 |
| MhlI | GDGCHC | 1 cut(s) | 135 |
| MluCI | AATT | 1 cut(s) | 18 |
| MnlI | CCTC | 1 cut(s) | 169 |
| MseI | TTAA | 1 cut(s) | 21 |
| MspR9I | CCNGG | 1 cut(s) | 95 |
| MvaI | CCWGG | 1 cut(s) | 95 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 104 |
| NdeI | CATATG | 1 cut(s) | 109 |
| NdeII | GATC | 3 cut(s) | 14, 143, 241 |
| NlaIV | GGNNCC | 1 cut(s) | 59 |
| NmuCI | GTSAC | 1 cut(s) | 235 |
| PkrI | GCNGC | 1 cut(s) | 127 |
| PshAI | GACNNNNGTC | 1 cut(s) | 117 |
| Psp124BI | GAGCTC | 1 cut(s) | 135 |
| Psp6I | CCWGG | 1 cut(s) | 93 |
| PspGI | CCWGG | 1 cut(s) | 93 |
| PspN4I | GGNNCC | 1 cut(s) | 59 |
| PsuI | RGATCY | 1 cut(s) | 143 |
| RsaI | GTAC | 1 cut(s) | 200 |
| RsaNI | GTAC | 1 cut(s) | 199 |
| SacI | GAGCTC | 1 cut(s) | 135 |
| SaqAI | TTAA | 1 cut(s) | 21 |
| SatI | GCNGC | 1 cut(s) | 126 |
| Sau3AI | GATC | 3 cut(s) | 14, 143, 241 |
| ScrFI | CCNGG | 1 cut(s) | 95 |
| SduI | GDGCHC | 1 cut(s) | 135 |
| SetI | ASST | 3 cut(s) | 117, 135, 192 |
| SfcI | CTRYAG | 1 cut(s) | 78 |
| Sse9I | AATT | 1 cut(s) | 18 |
| SsiI | CCGC | 1 cut(s) | 89 |
| SspI | AATATT | 1 cut(s) | 218 |
| SstI | GAGCTC | 1 cut(s) | 135 |
| StyD4I | CCNGG | 1 cut(s) | 93 |
| TaaI | ACNGT | 1 cut(s) | 79 |
| TaqI | TCGA | 1 cut(s) | 7 |
| TasI | AATT | 1 cut(s) | 18 |
| Tru1I | TTAA | 1 cut(s) | 21 |
| Tru9I | TTAA | 1 cut(s) | 21 |
| TscAI | CASTG | 1 cut(s) | 244 |
| TseFI | GTSAC | 1 cut(s) | 235 |
| TseI | GCWGC | 1 cut(s) | 125 |
| Tsp45I | GTSAC | 1 cut(s) | 235 |
| TspRI | CASTG | 1 cut(s) | 244 |