pycom15g08690

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0003090
Physical Location & Seq
Reverse (-)
5572827 .. 5574811
1985 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1410 bp
ATGGGTCGGGAGCTTTTGTCTATGTATCAAGCCAAAACGAGGAGATTGCTGTGGATTGTGGGAATGTTGTTTGCTGTGATTTTAGTTGTCTGGCATCTTGAATTTCCATATGGTACTTTCTCATTGTCTATACTCTCTACTGCAAAGGTTCCGGTAGAGGGGAAAAGTCGCTTCCAAGCTGGGGATTCACCATCTGATTCTGAGGCGGTTGGTAACATGTCGCTTTCTAATGATGTGAACTACACTAGGAAATATGGAACTCACGAGATAGGTAACGATAGTAGGACCTCGGGTTTTGTATTAGAAGGAAGTGAGGGCTCAAACAGAACTTTAGAAATTGATGAGGATACAGGTGAAGATCAGGAGGAGGCATCTGATACTTTTGTAAAGCAAAATAGAACTTTCATTGTGAAAATTGTCAACCCCTTGGAGGCTGACGTCGCACAAGAGCGGCGTAAACAATTCTCTTTTGAAAAGCAAAATACTACCGAGACTACTTTTCCAGAAGGCAGGACTAGGAATGAAAGAAATACTACAGATGAAGTAGTAAATCCTACTGCTGGTTTTCCAACCACTTCACCTGCATCCCCGATGATAAATTCATCACCTATCACAGCTCCAGCAATTATTGAAACAAACGTTGGAGCACCCCCTATAGCTGTTGGCTCAAATGTGACTTTGGTTCAGAAAGATCTAACAACCTTGTCTCAGAAACCCAAAAAGTCTGAGCAATTGCATAGTGACCTCAACCAAACAGAACAAAGTTCTTCAATGACTAGGGTCCCCGAAGTGAACAAAGAGCCAGAGCGTCCAGCCTTGGATGCATATTCAATATCTGATATGAACAAGCTGTTGCGTAAGAGTCATTCCCCGTACCATTCAGTGAAACCACTATGGTCTTCACCGGTTGACCAACAGTTGCAATTTGCAGCATCACAGATCGAAAATGCACCCCTTATAAAGAGTGATCAAACTCTTTATGCTCCACTATATAGGAATCTTTCCATGTTTAAAAGGAGCTACGAATTAATGGAGAACACTCTTAAAGTATACGTATACAGGGAAGGACAAAGACCCATATTACACTCGCCATTTCTCAGGGGAATATATGCTTCCGAGGGTTGGTTCATGAAGCTGATGGAAGCTGACAAGAGATTTGTCACTAAAAACCCTCTGGAAGCCCACCTATATTACTTGCCTTTTAGCTCTCGAATGTTAGAGGAAAGGTTATACGTGGCCAATTCACACAGTCATAAAAATCTTGTACAATATTTGAAGGACTATGTGGACATGATTGCTGGGAAGTATCCTTTCTGGAACAGAACTGGAAAAAAGGAGCCGATCATTTTCTTGTTGCTTGTCATGACTGGGCCCCAACAGAAACGAAGGAAATTATGGCTATGTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

470

Amino Acids

53.31

Weight (kDa)

8.3

Isoelectric Point (pI)

52.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 345 - 443 2.8e-13 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 959
AarI CACCTGC 1 cut(s) 589
AatII GACGTC 1 cut(s) 441
Acc36I ACCTGC 1 cut(s) 589
AccBSI CCGCTC 1 cut(s) 451
AccI GTMKAC 2 cut(s) 1050, 1056
AciI CCGC 2 cut(s) 206, 451
AclI AACGTT 1 cut(s) 639
AcoI YGGCCR 1 cut(s) 1236
AcsI RAATTY 2 cut(s) 101, 598
AcyI GRCGYC 1 cut(s) 438
AfaI GTAC 3 cut(s) 115, 875, 1266
AfiI CCNNNNNNNGG 6 cut(s) 39, 158, 181, 430, 560, 1122
AflIII ACRYGT 1 cut(s) 216
AgeI ACCGGT 1 cut(s) 904
AgsI TTSAA 6 cut(s) 101, 473, 632, 771, 831, 1276
AjuI GAANNNNNNNTTGG 2 cut(s) 624, 656
AluBI AGCT 9 cut(s) 13, 179, 617, 659, 850, 1020, 1135, 1145, 1206
AluI AGCT 9 cut(s) 13, 179, 617, 659, 850, 1020, 1135, 1145, 1206
Alw21I GWGCWC 1 cut(s) 649
Alw26I GTCTC 2 cut(s) 485, 711
Ama87I CYCGRG 1 cut(s) 289
AoxI GGCC 2 cut(s) 1236, 1370
ApaI GGGCCC 1 cut(s) 1374
ApeKI GCWGC 1 cut(s) 929
ApoI RAATTY 2 cut(s) 101, 598
ArsI GACNNNNNNTTYG 2 cut(s) 1139, 1171
AseI ATTAAT 1 cut(s) 1028
AsiGI ACCGGT 1 cut(s) 904
AspS9I GGNCC 4 cut(s) 285, 781, 1370, 1371
AsuHPI GGTGA 5 cut(s) 180, 365, 570, 597, 894
AvaI CYCGRG 1 cut(s) 289
AvaII GGWCC 2 cut(s) 285, 781
BaeGI GKGCMC 1 cut(s) 1374
BaeI ACNNNNGTAYC 2 cut(s) 369, 402
BalI TGGCCA 1 cut(s) 1238
BanII GRGCYC 2 cut(s) 320, 1374
BauI CACGAG 1 cut(s) 263
BbsI GAAGAC 1 cut(s) 891
Bbv12I GWGCWC 1 cut(s) 649
BbvI GCAGC 1 cut(s) 941
BccI CCATC 2 cut(s) 199, 1132
BcgI CGANNNNNNTGC 2 cut(s) 28, 62
BciVI GTATCC 2 cut(s) 340, 1317
BclI TGATCA 1 cut(s) 967
BcoDI GTCTC 2 cut(s) 485, 711
BfaI CTAG 3 cut(s) 246, 516, 777
BfmI CTRYAG 2 cut(s) 534, 654
BfuAI ACCTGC 1 cut(s) 589
BfuI GTATCC 2 cut(s) 340, 1317
BglII AGATCT 1 cut(s) 691
BisI GCNGC 2 cut(s) 452, 930
BlsI GCNGC 2 cut(s) 453, 931
Bme18I GGWCC 2 cut(s) 285, 781
BmeT110I CYCGRG 1 cut(s) 289
BmgT120I GGNCC 4 cut(s) 285, 781, 1370, 1371
BmiI GGNNCC 6 cut(s) 150, 782, 783, 1338, 1372, 1373
BmrI ACTGGG 1 cut(s) 1377
BmsI GCATC 5 cut(s) 103, 380, 593, 811, 941
BmuI ACTGGG 1 cut(s) 1377
BoxI GACNNNNGTC 1 cut(s) 779
BpiI GAAGAC 1 cut(s) 891
BpmI CTGGAG 1 cut(s) 603
BsaAI YACGTR 2 cut(s) 1054, 1234
BsaHI GRCGYC 1 cut(s) 438
BsaJI CCNNGG 4 cut(s) 288, 426, 816, 1116
BsaWI WCCGGW 2 cut(s) 151, 904
BsaXI ACNNNNNCTCC 1 cut(s) 32
Bsc4I CCNNNNNNNGG 6 cut(s) 39, 158, 181, 430, 560, 1122
Bse118I RCCGGY 1 cut(s) 904
Bse1I ACTGG 2 cut(s) 1330, 1372
BseDI CCNNGG 4 cut(s) 288, 426, 816, 1116
BseGI GGATG 2 cut(s) 584, 826
BseLI CCNNNNNNNGG 6 cut(s) 39, 158, 181, 430, 560, 1122
BseMII CTCAG 4 cut(s) 192, 717, 722, 1111
BseNI ACTGG 2 cut(s) 1330, 1372
BseRI GAGGAG 2 cut(s) 55, 380
BseSI GKGCMC 1 cut(s) 1374
BseXI GCAGC 1 cut(s) 941
BseYI CCCAGC 2 cut(s) 179, 1298
BshFI GGCC 2 cut(s) 1238, 1372
BshTI ACCGGT 1 cut(s) 904
BsiHKAI GWGCWC 1 cut(s) 649
BsiHKCI CYCGRG 1 cut(s) 289
BsiSI CCGG 2 cut(s) 152, 905
BslFI GGGAC 1 cut(s) 767
BslI CCNNNNNNNGG 6 cut(s) 39, 158, 181, 430, 560, 1122
BsmAI GTCTC 2 cut(s) 485, 711
BsmFI GGGAC 1 cut(s) 767
BsnI GGCC 2 cut(s) 1238, 1372
BsoBI CYCGRG 1 cut(s) 289
Bsp120I GGGCCC 1 cut(s) 1370
Bsp1286I GDGCHC 3 cut(s) 320, 649, 1374
Bsp1407I TGTACA 1 cut(s) 1264
Bsp143I GATC 5 cut(s) 358, 691, 939, 967, 1341
BspACI CCGC 2 cut(s) 206, 451
BspANI GGCC 2 cut(s) 1238, 1372
BspCNI CTCAG 4 cut(s) 193, 718, 721, 1110
BspHI TCATGA 2 cut(s) 1128, 1362
BspLI GGNNCC 6 cut(s) 150, 782, 783, 1338, 1372, 1373
BspMI ACCTGC 1 cut(s) 589
BsrBI CCGCTC 1 cut(s) 451
BsrFI RCCGGY 1 cut(s) 904
BsrGI TGTACA 1 cut(s) 1264
BsrI ACTGG 2 cut(s) 1330, 1372
BssAI RCCGGY 1 cut(s) 904
BssECI CCNNGG 4 cut(s) 288, 426, 816, 1116
BssMI GATC 5 cut(s) 358, 691, 939, 967, 1341
BssNAI GTATAC 2 cut(s) 1051, 1057
BssNI GRCGYC 1 cut(s) 438
BssSI CACGAG 1 cut(s) 263
BssT1I CCWWGG 2 cut(s) 426, 816
Bst1107I GTATAC 2 cut(s) 1051, 1057
Bst2BI CACGAG 1 cut(s) 263
Bst4CI ACNGT 2 cut(s) 918, 1250
BstACI GRCGYC 1 cut(s) 438
BstAUI TGTACA 1 cut(s) 1264
BstBAI YACGTR 2 cut(s) 1054, 1234
BstDEI CTNAG 4 cut(s) 201, 708, 726, 1097
BstF5I GGATG 2 cut(s) 584, 826
BstKTI GATC 5 cut(s) 361, 694, 942, 970, 1344
BstMAI GTCTC 2 cut(s) 485, 711
BstMBI GATC 5 cut(s) 358, 691, 939, 967, 1341
BstMWI GCNNNNNNNGC 2 cut(s) 440, 821
BstNSI RCATGY 1 cut(s) 220
BstPAI GACNNNNGTC 1 cut(s) 779
BstSFI CTRYAG 2 cut(s) 534, 654
BstSLI GKGCMC 1 cut(s) 1374
BstSNI TACGTA 1 cut(s) 1054
BstV1I GCAGC 1 cut(s) 941
BstV2I GAAGAC 1 cut(s) 891
BstX2I RGATCY 1 cut(s) 691
BstYI RGATCY 1 cut(s) 691
BstZ17I GTATAC 2 cut(s) 1051, 1057
BsuI GTATCC 2 cut(s) 340, 1317
BsuRI GGCC 2 cut(s) 1238, 1372
BtsCI GGATG 2 cut(s) 584, 826
BtsIMutI CAGTG 1 cut(s) 888
BveI ACCTGC 1 cut(s) 589
CciI TCATGA 2 cut(s) 1128, 1362
Cfr10I RCCGGY 1 cut(s) 904
Cfr13I GGNCC 4 cut(s) 285, 781, 1370, 1371
CseI GACGC 1 cut(s) 797
Csp6I GTAC 3 cut(s) 114, 874, 1265
CspAI ACCGGT 1 cut(s) 904
CviAII CATG 5 cut(s) 217, 1006, 1129, 1291, 1363
CviQI GTAC 3 cut(s) 114, 874, 1265
DdeI CTNAG 4 cut(s) 201, 708, 726, 1097
DpnI GATC 5 cut(s) 360, 693, 941, 969, 1343
DpnII GATC 5 cut(s) 358, 691, 939, 967, 1341
DraI TTTAAA 1 cut(s) 1012
EaeI YGGCCR 1 cut(s) 1236
Eco105I TACGTA 1 cut(s) 1054
Eco130I CCWWGG 2 cut(s) 426, 816
Eco24I GRGCYC 2 cut(s) 320, 1374
Eco47I GGWCC 2 cut(s) 285, 781
Eco88I CYCGRG 1 cut(s) 289
EcoO109I RGGNCCY 3 cut(s) 285, 781, 1371
EcoT14I CCWWGG 2 cut(s) 426, 816
EcoT22I ATGCAT 1 cut(s) 826
EcoT38I GRGCYC 2 cut(s) 320, 1374
ErhI CCWWGG 2 cut(s) 426, 816
FaeI CATG 5 cut(s) 220, 1009, 1132, 1294, 1366
FaqI GGGAC 1 cut(s) 767
FatI CATG 5 cut(s) 216, 1005, 1128, 1290, 1362
FauNDI CATATG 1 cut(s) 109
FbaI TGATCA 1 cut(s) 967
FblI GTMKAC 2 cut(s) 1050, 1056
Fnu4HI GCNGC 2 cut(s) 452, 930
FokI GGATG 2 cut(s) 571, 833
FriOI GRGCYC 2 cut(s) 320, 1374
Fsp4HI GCNGC 2 cut(s) 452, 930
FspBI CTAG 3 cut(s) 246, 516, 777
GluI GCNGC 2 cut(s) 452, 930
GsaI CCCAGC 2 cut(s) 183, 1302
GsuI CTGGAG 1 cut(s) 603
HaeIII GGCC 2 cut(s) 1238, 1372
HapII CCGG 2 cut(s) 152, 905
HgaI GACGC 1 cut(s) 797
Hin1I GRCGYC 1 cut(s) 438
Hin1II CATG 5 cut(s) 220, 1009, 1132, 1294, 1366
HincII GTYRAC 2 cut(s) 421, 910
HindII GTYRAC 2 cut(s) 421, 910
HinfI GANTC 4 cut(s) 185, 197, 862, 997
HpaII CCGG 2 cut(s) 152, 905
HphI GGTGA 5 cut(s) 180, 365, 570, 597, 894
Hpy166II GTNNAC 8 cut(s) 238, 421, 458, 793, 910, 1051, 1057, 1288
Hpy188I TCNGA 8 cut(s) 196, 202, 376, 687, 711, 727, 838, 1117
Hpy8I GTNNAC 8 cut(s) 238, 421, 458, 793, 910, 1051, 1057, 1288
Hpy99I CGWCG 1 cut(s) 443
HpyAV CCTTC 5 cut(s) 299, 500, 1058, 1270, 1380
HpyCH4III ACNGT 2 cut(s) 918, 1250
HpyCH4IV ACGT 4 cut(s) 438, 639, 1053, 1233
HpyCH4V TGCA 8 cut(s) 143, 584, 736, 824, 922, 929, 950, 1406
HpyF10VI GCNNNNNNNGC 2 cut(s) 440, 821
HpyF3I CTNAG 4 cut(s) 201, 708, 726, 1097
HpySE526I ACGT 4 cut(s) 438, 639, 1053, 1233
Hsp92I GRCGYC 1 cut(s) 438
Hsp92II CATG 5 cut(s) 220, 1009, 1132, 1294, 1366
KflI GGGWCCC 1 cut(s) 781
Ksp22I TGATCA 1 cut(s) 967
Kzo9I GATC 5 cut(s) 358, 691, 939, 967, 1341
LmnI GCTCC 6 cut(s) 10, 622, 644, 988, 1017, 1336
Lsp1109I GCAGC 1 cut(s) 941
LweI GCATC 5 cut(s) 103, 380, 593, 811, 941
MaeI CTAG 3 cut(s) 246, 516, 777
MaeII ACGT 4 cut(s) 438, 639, 1053, 1233
MaeIII GTNAC 5 cut(s) 212, 272, 673, 740, 1159
MalI GATC 5 cut(s) 360, 693, 941, 969, 1343
MbiI CCGCTC 1 cut(s) 451
MboI GATC 5 cut(s) 358, 691, 939, 967, 1341
MboII GAAGA 3 cut(s) 368, 759, 891
MfeI CAATTG 1 cut(s) 731
MflI RGATCY 1 cut(s) 691
MhlI GDGCHC 3 cut(s) 320, 649, 1374
MlsI TGGCCA 1 cut(s) 1238
MluNI TGGCCA 1 cut(s) 1238
MlyI GAGTC 1 cut(s) 871
MmeI TCCRAC 2 cut(s) 593, 622
Mox20I TGGCCA 1 cut(s) 1238
Mph1103I ATGCAT 1 cut(s) 826
MscI TGGCCA 1 cut(s) 1238
MseI TTAA 3 cut(s) 1011, 1028, 1044
Msp20I TGGCCA 1 cut(s) 1238
MspI CCGG 2 cut(s) 152, 905
MunI CAATTG 1 cut(s) 731
MwoI GCNNNNNNNGC 2 cut(s) 440, 821
NdeI CATATG 1 cut(s) 109
NdeII GATC 5 cut(s) 358, 691, 939, 967, 1341
NlaIII CATG 5 cut(s) 220, 1009, 1132, 1294, 1366
NlaIV GGNNCC 6 cut(s) 150, 782, 783, 1338, 1372, 1373
NmuCI GTSAC 3 cut(s) 673, 740, 1159
NsiI ATGCAT 1 cut(s) 826
NspI RCATGY 1 cut(s) 220
PagI TCATGA 2 cut(s) 1128, 1362
PaqCI CACCTGC 1 cut(s) 589
PciI ACATGT 1 cut(s) 216
PfeI GAWTC 3 cut(s) 185, 197, 997
PinAI ACCGGT 1 cut(s) 904
PkrI GCNGC 2 cut(s) 453, 931
PleI GAGTC 1 cut(s) 870
PpsI GAGTC 1 cut(s) 870
Ppu21I YACGTR 2 cut(s) 1054, 1234
PpuMI RGGWCCY 2 cut(s) 285, 781
PscI ACATGT 1 cut(s) 216
PshAI GACNNNNGTC 1 cut(s) 779
PshBI ATTAAT 1 cut(s) 1028
PsiI TTATAA 1 cut(s) 959
Psp1406I AACGTT 1 cut(s) 639
Psp5II RGGWCCY 2 cut(s) 285, 781
PspFI CCCAGC 2 cut(s) 179, 1298
PspN4I GGNNCC 6 cut(s) 150, 782, 783, 1338, 1372, 1373
PspOMI GGGCCC 1 cut(s) 1370
PspPI GGNCC 4 cut(s) 285, 781, 1370, 1371
PspPPI RGGWCCY 2 cut(s) 285, 781
PsuI RGATCY 1 cut(s) 691
RsaI GTAC 3 cut(s) 115, 875, 1266
RsaNI GTAC 3 cut(s) 114, 874, 1265
SaqAI TTAA 3 cut(s) 1011, 1028, 1044
SatI GCNGC 2 cut(s) 452, 930
Sau3AI GATC 5 cut(s) 358, 691, 939, 967, 1341
Sau96I GGNCC 4 cut(s) 285, 781, 1370, 1371
SchI GAGTC 1 cut(s) 871
SduI GDGCHC 3 cut(s) 320, 649, 1374
SfaNI GCATC 5 cut(s) 103, 380, 593, 811, 941
SfcI CTRYAG 2 cut(s) 534, 654
SinI GGWCC 2 cut(s) 285, 781
SnaBI TACGTA 1 cut(s) 1054
SsiI CCGC 2 cut(s) 206, 451
SspI AATATT 1 cut(s) 1271
SspMI CTAG 3 cut(s) 246, 516, 777
StyI CCWWGG 2 cut(s) 426, 816
TaaI ACNGT 2 cut(s) 918, 1250
TaiI ACGT 4 cut(s) 441, 642, 1056, 1236
TaqI TCGA 2 cut(s) 942, 1210
TatI WGTACW 1 cut(s) 1264
TauI GCSGC 1 cut(s) 454
TfiI GAWTC 3 cut(s) 185, 197, 997
Tru1I TTAA 3 cut(s) 1011, 1028, 1044
Tru9I TTAA 3 cut(s) 1011, 1028, 1044
TscAI CASTG 1 cut(s) 888
TseFI GTSAC 3 cut(s) 673, 740, 1159
TseI GCWGC 1 cut(s) 929
Tsp45I GTSAC 3 cut(s) 673, 740, 1159
TspDTI ATGAA 7 cut(s) 394, 537, 555, 591, 857, 1117, 1145
TspRI CASTG 1 cut(s) 888
VpaK11BI GGWCC 2 cut(s) 285, 781
VspI ATTAAT 1 cut(s) 1028
XapI RAATTY 2 cut(s) 101, 598
XceI RCATGY 1 cut(s) 220
XmiI GTMKAC 2 cut(s) 1050, 1056
XspI CTAG 3 cut(s) 246, 516, 777
ZraI GACGTC 1 cut(s) 439
Zsp2I ATGCAT 1 cut(s) 826
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.