pycom15g15460

Heme oxygenase 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0005358
Physical Location & Seq
Forward (+)
10765478 .. 10767795
2318 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 852 bp
ATGGCTTCTTTAACCCCGATTTCGCAATCCCAATCACTTTTCAACAAAAACCAGTTCAAGTTGCCCCCAATTTGGGGCTCCGATTTCTTTCCGAAGAAGTTCTCTTTTTCGTTTCTGAGGATGAATTCCAGAGTGCCCACCAACGCGGCGGCGGTGGCCGGGGTGGTTTCGGCCACCACGGCGGAGAAGGCGAAGAAGAGGTACCCCGGGGAGGCGAAGGGGTTCGTGGAGGAGATGAGGTTCGTGGCGATGAAGTTGCACACCAGGGACCAAGCTAAGGAGGGGGAGAAGGAGGTGAAGGAGCCGCAGGAGGGGCCAGTGGCTAAGTGGGAGCCAACTGTTGATGGGTATTTGAAGTTTTTGTTGGATAGCAAGTTGGTTTACGATACCCTTGAAGGGATTGTTGAAAAAGCCCCCTTTCCTTTTTACGCTGAGTTCAGAAATACTGGATTGGAAAGGTCTGAAAAGTTGGCGAAAGATTTGAAGTGGTTTAAGGAGCAAGGGTATGCCATACCAGAACCTTCTGCTCCGGGTGTAACCTACACAGAGTATCTTAGGGAACTGTCGGAGAAGGATCCTCAAGCATTTATTTGCCACTTCTACAACATATACTTTGCTCATTCGGCTGGTGGTCGAATGATTGGGAAAAAGGTGGCGGAAATGATACTTGACAAAAAGGAATTGGAATTCTACAAATGGGACGGCGAGCTTCCTCAACTGTTGCAGAATGTACGGGAGAAGTTAAATAAAGTTGCGGAGAGCTGGACGAGGGAGGAGAAGAACCACTGCTTGGAAGAAACCGAGAAATCGTTCAAACATTCGGGAGAGATTCTGCGTCTTATATTGTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004392 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006720 GO:0006721 GO:0006725 GO:0006778 GO:0006787 GO:0006788 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009056 GO:0009058 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009648 GO:0009791 GO:0009812 GO:0009813 GO:0009888 GO:0009987 GO:0010019 GO:0010024 GO:0010073 GO:0010075 GO:0010119 GO:0010225 GO:0010228 GO:0010229 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016491 GO:0016705 GO:0018130 GO:0019438 GO:0019439 GO:0020037 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0033013 GO:0033014 GO:0033015 GO:0034641 GO:0034644 GO:0040008 GO:0042168 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044255 GO:0044270 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046148 GO:0046483 GO:0046700 GO:0046906 GO:0048037 GO:0048367 GO:0048507 GO:0048509 GO:0048573 GO:0048608 GO:0048638 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051186 GO:0051187 GO:0051188 GO:0051202 GO:0051716 GO:0055114 GO:0061458 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071494 GO:0071704 GO:0090567 GO:0097159 GO:0104004 GO:1901360 GO:1901361 GO:1901362 GO:1901363 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576
KEGG Pathways
Metabolic & Signaling
ko00860 ko01100 ko01110 map00860 map01100 map01110
Pfam Domains
Protein Families
Heme_oxygenase

Protein Analysis

284

Amino Acids

32.51

Weight (kDa)

8.28

Isoelectric Point (pI)

44.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Heme_oxygenase PF01126 94 - 277 4.5e-13 Heme oxygenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 201
AccB1I GGYRCC 1 cut(s) 201
AccB7I CCANNNNNTGG 1 cut(s) 790
AccII CGCG 1 cut(s) 146
AciI CCGC 7 cut(s) 146, 149, 152, 182, 305, 656, 755
AclWI GGATC 2 cut(s) 569, 582
AcoI YGGCCR 2 cut(s) 156, 171
AcsI RAATTY 2 cut(s) 124, 686
AfaI GTAC 2 cut(s) 203, 732
AfiI CCNNNNNNNGG 8 cut(s) 72, 73, 74, 211, 277, 311, 396, 790
AgsI TTSAA 7 cut(s) 43, 58, 355, 395, 407, 484, 814
AjnI CCWGG 1 cut(s) 263
AjuI GAANNNNNNNTTGG 4 cut(s) 347, 379, 773, 805
AloI GAACNNNNNNTCC 2 cut(s) 224, 256
AluBI AGCT 3 cut(s) 275, 709, 762
AluI AGCT 3 cut(s) 275, 709, 762
AlwI GGATC 2 cut(s) 569, 582
Ama87I CYCGRG 1 cut(s) 206
AoxI GGCC 3 cut(s) 156, 171, 314
ApoI RAATTY 2 cut(s) 124, 686
Asp700I GAANNNNTTC 3 cut(s) 98, 221, 809
Asp718I GGTACC 1 cut(s) 201
AspS9I GGNCC 2 cut(s) 268, 314
AsuC2I CCSGG 4 cut(s) 160, 207, 208, 531
AsuHPI GGTGA 1 cut(s) 307
AvaI CYCGRG 1 cut(s) 206
AvaII GGWCC 1 cut(s) 268
BaeGI GKGCMC 1 cut(s) 138
BamHI GGATCC 1 cut(s) 574
BanI GGYRCC 1 cut(s) 201
BanII GRGCYC 1 cut(s) 80
BarI GAAGNNNNNNTAC 2 cut(s) 185, 217
BccI CCATC 1 cut(s) 338
BceAI ACGGC 2 cut(s) 195, 718
BcgI CGANNNNNNTGC 2 cut(s) 238, 272
BciT130I CCWGG 1 cut(s) 265
BcnI CCSGG 4 cut(s) 160, 207, 208, 531
BglI GCCNNNNNGGC 1 cut(s) 179
BisI GCNGC 3 cut(s) 147, 150, 305
BlsI GCNGC 3 cut(s) 148, 151, 306
Bme1390I CCNGG 5 cut(s) 160, 207, 208, 265, 531
Bme18I GGWCC 1 cut(s) 268
BmeT110I CYCGRG 1 cut(s) 206
BmgT120I GGNCC 2 cut(s) 268, 314
BmiI GGNNCC 7 cut(s) 79, 203, 269, 303, 315, 333, 576
BmrFI CCNGG 5 cut(s) 160, 207, 208, 265, 531
Bpu10I CCTNAGC 1 cut(s) 276
BpuEI CTTGAG 1 cut(s) 564
BpuMI CCSGG 4 cut(s) 160, 207, 208, 531
BsaJI CCNNGG 6 cut(s) 159, 177, 205, 206, 207, 264
BsaXI ACNNNNNCTCC 4 cut(s) 224, 254, 488, 518
Bsc4I CCNNNNNNNGG 8 cut(s) 72, 73, 74, 211, 277, 311, 396, 790
Bse1I ACTGG 3 cut(s) 52, 317, 451
BseBI CCWGG 1 cut(s) 265
BseDI CCNNGG 6 cut(s) 159, 177, 205, 206, 207, 264
BseGI GGATG 1 cut(s) 126
BseLI CCNNNNNNNGG 8 cut(s) 72, 73, 74, 211, 277, 311, 396, 790
BseMII CTCAG 2 cut(s) 107, 423
BseNI ACTGG 3 cut(s) 52, 317, 451
BseRI GAGGAG 2 cut(s) 245, 788
BseSI GKGCMC 1 cut(s) 138
Bsh1236I CGCG 1 cut(s) 146
BshFI GGCC 3 cut(s) 158, 173, 316
BshNI GGYRCC 1 cut(s) 201
BsiHKCI CYCGRG 1 cut(s) 206
BsiSI CCGG 3 cut(s) 159, 207, 530
BslFI GGGAC 2 cut(s) 281, 713
BslI CCNNNNNNNGG 8 cut(s) 72, 73, 74, 211, 277, 311, 396, 790
BsmFI GGGAC 2 cut(s) 281, 713
BsnI GGCC 3 cut(s) 158, 173, 316
BsoBI CYCGRG 1 cut(s) 206
Bsp1286I GDGCHC 2 cut(s) 80, 138
Bsp143I GATC 1 cut(s) 574
BspACI CCGC 7 cut(s) 146, 149, 152, 182, 305, 656, 755
BspANI GGCC 3 cut(s) 158, 173, 316
BspCNI CTCAG 2 cut(s) 108, 424
BspFNI CGCG 1 cut(s) 146
BspHI TCATGA 1 cut(s) 848
BspLI GGNNCC 7 cut(s) 79, 203, 269, 303, 315, 333, 576
BspPI GGATC 2 cut(s) 569, 582
BspT107I GGYRCC 1 cut(s) 201
BsrI ACTGG 3 cut(s) 52, 317, 451
BssECI CCNNGG 6 cut(s) 159, 177, 205, 206, 207, 264
BssMI GATC 1 cut(s) 574
Bst2UI CCWGG 1 cut(s) 265
Bst4CI ACNGT 3 cut(s) 340, 564, 720
Bst6I CTCTTC 1 cut(s) 191
BstC8I GCNNGC 1 cut(s) 707
BstDEI CTNAG 5 cut(s) 116, 276, 324, 432, 554
BstDSI CCRYGG 1 cut(s) 177
BstF5I GGATG 1 cut(s) 126
BstFNI CGCG 1 cut(s) 146
BstKTI GATC 1 cut(s) 577
BstMBI GATC 1 cut(s) 574
BstMWI GCNNNNNNNGC 5 cut(s) 155, 179, 188, 313, 623
BstNI CCWGG 1 cut(s) 265
BstSCI CCNGG 5 cut(s) 158, 205, 206, 263, 529
BstSLI GKGCMC 1 cut(s) 138
BstUI CGCG 1 cut(s) 146
BstX2I RGATCY 1 cut(s) 574
BstYI RGATCY 1 cut(s) 574
BsuRI GGCC 3 cut(s) 158, 173, 316
BtgI CCRYGG 1 cut(s) 177
BtgZI GCGATG 1 cut(s) 263
BtsCI GGATG 1 cut(s) 126
BtsI GCAGTG 1 cut(s) 784
BtsIMutI CAGTG 2 cut(s) 324, 784
Cac8I GCNNGC 1 cut(s) 707
CciI TCATGA 1 cut(s) 848
Cfr13I GGNCC 2 cut(s) 268, 314
Cfr9I CCCGGG 1 cut(s) 206
CseI GACGC 1 cut(s) 824
Csp6I GTAC 2 cut(s) 202, 731
CviAII CATG 1 cut(s) 849
CviQI GTAC 2 cut(s) 202, 731
DdeI CTNAG 5 cut(s) 116, 276, 324, 432, 554
DpnI GATC 1 cut(s) 576
DpnII GATC 1 cut(s) 574
EaeI YGGCCR 2 cut(s) 156, 171
Eam1104I CTCTTC 1 cut(s) 191
EarI CTCTTC 1 cut(s) 191
EciI GGCGGA 2 cut(s) 197, 671
Eco24I GRGCYC 1 cut(s) 80
Eco47I GGWCC 1 cut(s) 268
Eco88I CYCGRG 1 cut(s) 206
EcoRI GAATTC 2 cut(s) 124, 686
EcoRII CCWGG 1 cut(s) 263
EcoT38I GRGCYC 1 cut(s) 80
FaeI CATG 1 cut(s) 852
FaiI YATR 6 cut(s) 507, 512, 608, 610, 842, 850
FaqI GGGAC 2 cut(s) 281, 713
FatI CATG 1 cut(s) 848
Fnu4HI GCNGC 3 cut(s) 147, 150, 305
FokI GGATG 1 cut(s) 133
FriOI GRGCYC 1 cut(s) 80
Fsp4HI GCNGC 3 cut(s) 147, 150, 305
GluI GCNGC 3 cut(s) 147, 150, 305
HaeIII GGCC 3 cut(s) 158, 173, 316
HapII CCGG 3 cut(s) 159, 207, 530
HgaI GACGC 1 cut(s) 824
Hin1II CATG 1 cut(s) 852
HinfI GANTC 1 cut(s) 829
HpaII CCGG 3 cut(s) 159, 207, 530
HphI GGTGA 1 cut(s) 307
Hpy166II GTNNAC 1 cut(s) 382
Hpy188I TCNGA 6 cut(s) 82, 93, 117, 440, 463, 568
Hpy188III TCNNGA 3 cut(s) 129, 822, 849
Hpy8I GTNNAC 1 cut(s) 382
HpyAV CCTTC 7 cut(s) 181, 211, 283, 292, 389, 531, 565
HpyCH4III ACNGT 3 cut(s) 340, 564, 720
HpyCH4V TGCA 2 cut(s) 259, 724
HpyF10VI GCNNNNNNNGC 5 cut(s) 155, 179, 188, 313, 623
HpyF3I CTNAG 5 cut(s) 116, 276, 324, 432, 554
Hsp92II CATG 1 cut(s) 852
KpnI GGTACC 1 cut(s) 205
Kzo9I GATC 1 cut(s) 574
LmnI GCTCC 5 cut(s) 83, 301, 331, 496, 532
MaeIII GTNAC 1 cut(s) 535
MalI GATC 1 cut(s) 576
MboI GATC 1 cut(s) 574
MboII GAAGA 5 cut(s) 106, 205, 208, 790, 806
MflI RGATCY 1 cut(s) 574
MhlI GDGCHC 2 cut(s) 80, 138
MluCI AATT 4 cut(s) 69, 124, 680, 686
MmeI TCCRAC 2 cut(s) 345, 546
MroXI GAANNNNTTC 3 cut(s) 98, 221, 809
MseI TTAA 3 cut(s) 11, 492, 743
MspI CCGG 3 cut(s) 159, 207, 530
MspR9I CCNGG 5 cut(s) 160, 207, 208, 265, 531
MvaI CCWGG 1 cut(s) 265
MvnI CGCG 1 cut(s) 146
MwoI GCNNNNNNNGC 5 cut(s) 155, 179, 188, 313, 623
NciI CCSGG 4 cut(s) 160, 207, 208, 531
NdeII GATC 1 cut(s) 574
NlaIII CATG 1 cut(s) 852
NlaIV GGNNCC 7 cut(s) 79, 203, 269, 303, 315, 333, 576
PagI TCATGA 1 cut(s) 848
PdmI GAANNNNTTC 3 cut(s) 98, 221, 809
PfeI GAWTC 1 cut(s) 829
PflMI CCANNNNNTGG 1 cut(s) 790
PkrI GCNGC 3 cut(s) 148, 151, 306
Psp6I CCWGG 1 cut(s) 263
PspGI CCWGG 1 cut(s) 263
PspN4I GGNNCC 7 cut(s) 79, 203, 269, 303, 315, 333, 576
PspPI GGNCC 2 cut(s) 268, 314
PsuI RGATCY 1 cut(s) 574
RsaI GTAC 2 cut(s) 203, 732
RsaNI GTAC 2 cut(s) 202, 731
SaqAI TTAA 3 cut(s) 11, 492, 743
SatI GCNGC 3 cut(s) 147, 150, 305
Sau3AI GATC 1 cut(s) 574
Sau96I GGNCC 2 cut(s) 268, 314
ScrFI CCNGG 5 cut(s) 160, 207, 208, 265, 531
SduI GDGCHC 2 cut(s) 80, 138
SinI GGWCC 1 cut(s) 268
SmaI CCCGGG 1 cut(s) 208
SmlI CTYRAG 1 cut(s) 579
SmoI CTYRAG 1 cut(s) 579
Sse9I AATT 4 cut(s) 69, 124, 680, 686
SsiI CCGC 7 cut(s) 146, 149, 152, 182, 305, 656, 755
StyD4I CCNGG 5 cut(s) 158, 205, 206, 263, 529
TaaI ACNGT 3 cut(s) 340, 564, 720
TaqI TCGA 1 cut(s) 634
TasI AATT 4 cut(s) 69, 124, 680, 686
TauI GCSGC 3 cut(s) 149, 152, 307
TfiI GAWTC 1 cut(s) 829
Tru1I TTAA 3 cut(s) 11, 492, 743
Tru9I TTAA 3 cut(s) 11, 492, 743
TscAI CASTG 2 cut(s) 324, 791
TspDTI ATGAA 2 cut(s) 137, 266
TspMI CCCGGG 1 cut(s) 206
TspRI CASTG 2 cut(s) 324, 791
Van91I CCANNNNNTGG 1 cut(s) 790
VpaK11BI GGWCC 1 cut(s) 268
XapI RAATTY 2 cut(s) 124, 686
XcmI CCANNNNNNNNNTGG 1 cut(s) 324
XmaI CCCGGG 1 cut(s) 206
XmnI GAANNNNTTC 3 cut(s) 98, 221, 809
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.