Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0005283

Physical Location & Seq

Genomic Coordinates Forward (+)

11907184 .. 11907762

Gene Structure 579 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGCCTGATCTGAATGAAGAGCTAACCCCGCCATTTGAGTCCTCCAGAGATGAAGACAATGGATACACTTTGCAGCATGCTGTTGAAGCAGATGATGATGCTGCCTCTCATGACCTAGTGAAGAATGGTTTAGCAAGATCACATGGTAGTGGTGATTCGCAGACCTGGACTCTCGGGCCTCATGGAGATGTCCCAGCTGTTGATTCCCGGGCAGAAGTTGGCAGGAAGAGGGCAGCAAACACAAATGAAGAAATATATGATTGTGACAGCACGCTAATAAACGGGCCACCGGCGCATATTTCTAATGGTTCTTATTGCTTGGACGAGAACTTTGAGTACTGTGTGAAAATAATCCGGTGGTTGGAATGTGAGGGTCACATTACACAGGAATTCAGGTTGAAATTGCTAACATGGTTTAGTTTGAGATCGACTGAGCAGGAGCGTAGGGTGGTCAATACCTTTATTCATACTATGATCGAGGATCCAAGTAGCTTGGCAGGACAGTTAGTTGACTCATTTTCAGATATCGTGTCCAACAAGAGGCCACGAAATGGATTCTGTAGTAAGCTGTGGCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009892 GO:0009893 GO:0009987 GO:0010048 GO:0010468 GO:0010604 GO:0010605 GO:0010629 GO:0010638 GO:0016604 GO:0016607 GO:0017053 GO:0019222 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0033043 GO:0033044 GO:0033554 GO:0036293 GO:0040029 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0048518 GO:0048519 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051569 GO:0051571 GO:0051716 GO:0060255 GO:0061085 GO:0061087 GO:0065007 GO:0070013 GO:0070417 GO:0070482 GO:0080090 GO:0090568 GO:1902275 GO:1905269 GO:2001252

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD_Oberon fn3

Protein Analysis

193

Amino Acids

21.61

Weight (kDa)

4.87

Isoelectric Point (pI)

57.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VIN3_C	PF23380	108 - 181	9.1e-41	VIN3-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18870 AT3G24440 AT3G24440
fragaria_vesca	FvH4_1g05280
malus_domestica	MD02G1056200.v1.1 MD15G1189100.v1.1
pyrus_communis	pycom02g04520 pycom02g04530 pycom15g16940 pycom15g16950
rosa_chinensis	RchiOBHm_Chr2g0091001
rosa_laevigata	RLG00000015776 RLG00000016165
rosa_multiflora	Rmu_sc0003305.1_g000004 Rmu_sc0004626.1_g000008
rosa_roxburghii	Rroxscaffold_2G00150700 Rroxscaffold_2G00154300 Rroxscaffold_2G00154540
rosa_rugosa	Rorug01G0468700 Rorug01G0468800 Rorug02G0011400
rosa_samantha	Rh2BG020600 Rh2BG056000 Rh2CG020200 Rh2CG020500 Rh2CG021200 Rh2CG058300 Rh2DG057400
rosa_wichuraiana	Rw2G005160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	551
AciI	CCGC	1 cut(s)	29
AclWI	GGATC	2 cut(s)	476, 489
AcsI	RAATTY	1 cut(s)	389
AfaI	GTAC	1 cut(s)	338
AfiI	CCNNNNNNNGG	3 cut(s)	361, 540, 551
AgsI	TTSAA	2 cut(s)	86, 400
AjnI	CCWGG	1 cut(s)	164
AluBI	AGCT	4 cut(s)	22, 197, 492, 568
AluI	AGCT	4 cut(s)	22, 197, 492, 568
AlwI	GGATC	2 cut(s)	476, 489
Ama87I	CYCGRG	2 cut(s)	173, 207
AoxI	GGCC	3 cut(s)	176, 284, 542
ApeKI	GCWGC	3 cut(s)	73, 101, 233
ApoI	RAATTY	1 cut(s)	389
ArsI	GACNNNNNNTTYG	2 cut(s)	314, 346
AspLEI	GCGC	1 cut(s)	295
AspS9I	GGNCC	2 cut(s)	176, 284
AsuC2I	CCSGG	2 cut(s)	208, 209
AsuHPI	GGTGA	1 cut(s)	164
AvaI	CYCGRG	2 cut(s)	173, 207
BamHI	GGATCC	1 cut(s)	481
BbsI	GAAGAC	1 cut(s)	60
BbvI	GCAGC	3 cut(s)	85, 88, 245
BciT130I	CCWGG	1 cut(s)	166
BciVI	GTATCC	1 cut(s)	56
BcnI	CCSGG	2 cut(s)	208, 209
BfaI	CTAG	1 cut(s)	116
BfmI	CTRYAG	1 cut(s)	559
BfuI	GTATCC	1 cut(s)	56
BisI	GCNGC	3 cut(s)	74, 102, 234
BlsI	GCNGC	3 cut(s)	75, 103, 235
BmcAI	AGTACT	1 cut(s)	338
Bme1390I	CCNGG	3 cut(s)	166, 208, 209
BmeT110I	CYCGRG	2 cut(s)	173, 207
BmgT120I	GGNCC	2 cut(s)	176, 284
BmiI	GGNNCC	1 cut(s)	483
BmrFI	CCNGG	3 cut(s)	166, 208, 209
BmsI	GCATC	1 cut(s)	88
BpiI	GAAGAC	1 cut(s)	60
BpmI	CTGGAG	1 cut(s)	28
BpuMI	CCSGG	2 cut(s)	208, 209
BsaJI	CCNNGG	1 cut(s)	207
BsaWI	WCCGGW	1 cut(s)	354
Bsc4I	CCNNNNNNNGG	3 cut(s)	361, 540, 551
Bse118I	RCCGGY	1 cut(s)	289
BseBI	CCWGG	1 cut(s)	166
BseDI	CCNNGG	1 cut(s)	207
BseLI	CCNNNNNNNGG	3 cut(s)	361, 540, 551
BseMII	CTCAG	1 cut(s)	423
BseXI	GCAGC	3 cut(s)	85, 88, 245
BseYI	CCCAGC	1 cut(s)	193
BshFI	GGCC	3 cut(s)	178, 286, 544
BsiHKCI	CYCGRG	2 cut(s)	173, 207
BsiSI	CCGG	3 cut(s)	208, 290, 355
BslFI	GGGAC	1 cut(s)	176
BslI	CCNNNNNNNGG	3 cut(s)	361, 540, 551
BsmFI	GGGAC	1 cut(s)	176
BsnI	GGCC	3 cut(s)	178, 286, 544
BsoBI	CYCGRG	2 cut(s)	173, 207
Bsp143I	GATC	5 cut(s)	7, 137, 425, 474, 481
BspACI	CCGC	1 cut(s)	29
BspANI	GGCC	3 cut(s)	178, 286, 544
BspCNI	CTCAG	1 cut(s)	424
BspHI	TCATGA	1 cut(s)	109
BspLI	GGNNCC	1 cut(s)	483
BspPI	GGATC	2 cut(s)	476, 489
BspQI	GCTCTTC	1 cut(s)	12
BsrFI	RCCGGY	1 cut(s)	289
BssAI	RCCGGY	1 cut(s)	289
BssECI	CCNNGG	1 cut(s)	207
BssMI	GATC	5 cut(s)	7, 137, 425, 474, 481
Bst2UI	CCWGG	1 cut(s)	166
Bst4CI	ACNGT	2 cut(s)	341, 504
Bst6I	CTCTTC	2 cut(s)	12, 221
BstC8I	GCNNGC	2 cut(s)	78, 272
BstDEI	CTNAG	1 cut(s)	432
BstHHI	GCGC	1 cut(s)	295
BstKTI	GATC	5 cut(s)	10, 140, 428, 477, 484
BstMBI	GATC	5 cut(s)	7, 137, 425, 474, 481
BstMWI	GCNNNNNNNGC	3 cut(s)	28, 86, 292
BstNI	CCWGG	1 cut(s)	166
BstNSI	RCATGY	1 cut(s)	80
BstSCI	CCNGG	3 cut(s)	164, 206, 207
BstSFI	CTRYAG	1 cut(s)	559
BstV1I	GCAGC	3 cut(s)	85, 88, 245
BstV2I	GAAGAC	1 cut(s)	60
BstX2I	RGATCY	1 cut(s)	481
BstYI	RGATCY	1 cut(s)	481
BsuI	GTATCC	1 cut(s)	56
BsuRI	GGCC	3 cut(s)	178, 286, 544
Cac8I	GCNNGC	2 cut(s)	78, 272
CciI	TCATGA	1 cut(s)	109
CfoI	GCGC	1 cut(s)	295
Cfr10I	RCCGGY	1 cut(s)	289
Cfr13I	GGNCC	2 cut(s)	176, 284
Cfr9I	CCCGGG	1 cut(s)	207
Csp6I	GTAC	1 cut(s)	337
CviAII	CATG	5 cut(s)	77, 110, 143, 182, 411
CviJI	RGCY	7 cut(s)	22, 178, 197, 286, 492, 544, 568
CviKI_1	RGCY	7 cut(s)	22, 178, 197, 286, 492, 544, 568
CviQI	GTAC	1 cut(s)	337
DdeI	CTNAG	1 cut(s)	432
DpnI	GATC	5 cut(s)	9, 139, 427, 476, 483
DpnII	GATC	5 cut(s)	7, 137, 425, 474, 481
Eam1104I	CTCTTC	2 cut(s)	12, 221
EarI	CTCTTC	2 cut(s)	12, 221
Eco32I	GATATC	1 cut(s)	526
Eco88I	CYCGRG	2 cut(s)	173, 207
EcoRI	GAATTC	1 cut(s)	389
EcoRII	CCWGG	1 cut(s)	164
EcoRV	GATATC	1 cut(s)	526
FaeI	CATG	5 cut(s)	80, 113, 146, 185, 414
FaqI	GGGAC	1 cut(s)	176
FatI	CATG	5 cut(s)	76, 109, 142, 181, 410
FauI	CCCGC	1 cut(s)	36
Fnu4HI	GCNGC	3 cut(s)	74, 102, 234
Fsp4HI	GCNGC	3 cut(s)	74, 102, 234
FspBI	CTAG	1 cut(s)	116
GlaI	GCGC	1 cut(s)	294
GluI	GCNGC	3 cut(s)	74, 102, 234
GsaI	CCCAGC	1 cut(s)	197
GsuI	CTGGAG	1 cut(s)	28
HaeIII	GGCC	3 cut(s)	178, 286, 544
HapII	CCGG	3 cut(s)	208, 290, 355
HhaI	GCGC	1 cut(s)	295
Hin1II	CATG	5 cut(s)	80, 113, 146, 185, 414
Hin6I	GCGC	1 cut(s)	293
HinP1I	GCGC	1 cut(s)	293
HincII	GTYRAC	1 cut(s)	511
HindII	GTYRAC	1 cut(s)	511
HinfI	GANTC	6 cut(s)	38, 155, 169, 203, 512, 555
HpaII	CCGG	3 cut(s)	208, 290, 355
HphI	GGTGA	1 cut(s)	164
Hpy166II	GTNNAC	1 cut(s)	511
Hpy188I	TCNGA	2 cut(s)	12, 523
Hpy188III	TCNNGA	2 cut(s)	45, 110
Hpy8I	GTNNAC	1 cut(s)	511
HpyCH4III	ACNGT	2 cut(s)	341, 504
HpyCH4V	TGCA	1 cut(s)	73
HpyF10VI	GCNNNNNNNGC	3 cut(s)	28, 86, 292
HpyF3I	CTNAG	1 cut(s)	432
Hsp92II	CATG	5 cut(s)	80, 113, 146, 185, 414
HspAI	GCGC	1 cut(s)	293
Kzo9I	GATC	5 cut(s)	7, 137, 425, 474, 481
LguI	GCTCTTC	1 cut(s)	12
LmnI	GCTCC	1 cut(s)	439
Lsp1109I	GCAGC	3 cut(s)	85, 88, 245
LweI	GCATC	1 cut(s)	88
MaeI	CTAG	1 cut(s)	116
MaeIII	GTNAC	2 cut(s)	263, 374
MalI	GATC	5 cut(s)	9, 139, 427, 476, 483
MboI	GATC	5 cut(s)	7, 137, 425, 474, 481
MboII	GAAGA	5 cut(s)	29, 65, 133, 238, 260
MflI	RGATCY	1 cut(s)	481
MluCI	AATT	2 cut(s)	389, 401
MlyI	GAGTC	3 cut(s)	47, 163, 506
MmeI	TCCRAC	2 cut(s)	342, 558
MnlI	CCTC	7 cut(s)	52, 115, 189, 222, 364, 472, 534
MseI	TTAA	1 cut(s)	577
MslI	CAYNNNNRTG	2 cut(s)	147, 186
MspA1I	CMGCKG	1 cut(s)	197
MspI	CCGG	3 cut(s)	208, 290, 355
MspR9I	CCNGG	3 cut(s)	166, 208, 209
MvaI	CCWGG	1 cut(s)	166
MwoI	GCNNNNNNNGC	3 cut(s)	28, 86, 292
NciI	CCSGG	2 cut(s)	208, 209
NdeII	GATC	5 cut(s)	7, 137, 425, 474, 481
NlaIII	CATG	5 cut(s)	80, 113, 146, 185, 414
NlaIV	GGNNCC	1 cut(s)	483
NmuCI	GTSAC	2 cut(s)	263, 374
NspI	RCATGY	1 cut(s)	80
PaeI	GCATGC	1 cut(s)	80
PagI	TCATGA	1 cut(s)	109
PciSI	GCTCTTC	1 cut(s)	12
PfeI	GAWTC	3 cut(s)	155, 203, 555
PflMI	CCANNNNNTGG	1 cut(s)	551
PkrI	GCNGC	3 cut(s)	75, 103, 235
PleI	GAGTC	3 cut(s)	46, 163, 506
PpsI	GAGTC	3 cut(s)	46, 163, 506
Psp6I	CCWGG	1 cut(s)	164
PspFI	CCCAGC	1 cut(s)	193
PspGI	CCWGG	1 cut(s)	164
PspN4I	GGNNCC	1 cut(s)	483
PspPI	GGNCC	2 cut(s)	176, 284
PsrI	GAACNNNNNNTAC	2 cut(s)	320, 352
PsuI	RGATCY	1 cut(s)	481
PvuII	CAGCTG	1 cut(s)	197
RsaI	GTAC	1 cut(s)	338
RsaNI	GTAC	1 cut(s)	337
RseI	CAYNNNNRTG	2 cut(s)	147, 186
SapI	GCTCTTC	1 cut(s)	12
SaqAI	TTAA	1 cut(s)	577
SatI	GCNGC	3 cut(s)	74, 102, 234
Sau3AI	GATC	5 cut(s)	7, 137, 425, 474, 481
Sau96I	GGNCC	2 cut(s)	176, 284
ScaI	AGTACT	1 cut(s)	338
SchI	GAGTC	3 cut(s)	47, 163, 506
ScrFI	CCNGG	3 cut(s)	166, 208, 209
SetI	ASST	8 cut(s)	24, 117, 167, 199, 398, 461, 494, 570
SfaNI	GCATC	1 cut(s)	88
SfcI	CTRYAG	1 cut(s)	559
SgrAI	CRCCGGYG	1 cut(s)	289
SmaI	CCCGGG	1 cut(s)	209
SmiMI	CAYNNNNRTG	2 cut(s)	147, 186
SphI	GCATGC	1 cut(s)	80
Sse9I	AATT	2 cut(s)	389, 401
SsiI	CCGC	1 cut(s)	29
SspMI	CTAG	1 cut(s)	116
StyD4I	CCNGG	3 cut(s)	164, 206, 207
TaaI	ACNGT	2 cut(s)	341, 504
TaqI	TCGA	2 cut(s)	428, 477
TasI	AATT	2 cut(s)	389, 401
TatI	WGTACW	1 cut(s)	336
TfiI	GAWTC	3 cut(s)	155, 203, 555
Tru1I	TTAA	1 cut(s)	577
Tru9I	TTAA	1 cut(s)	577
TseFI	GTSAC	2 cut(s)	263, 374
TseI	GCWGC	3 cut(s)	73, 101, 233
Tsp45I	GTSAC	2 cut(s)	263, 374
TspDTI	ATGAA	4 cut(s)	30, 66, 261, 455
TspMI	CCCGGG	1 cut(s)	207
Van91I	CCANNNNNTGG	1 cut(s)	551
XapI	RAATTY	1 cut(s)	389
XceI	RCATGY	1 cut(s)	80
XmaI	CCCGGG	1 cut(s)	207
XspI	CTAG	1 cut(s)	116
ZrmI	AGTACT	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.