Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0010609

Physical Location & Seq

Genomic Coordinates Forward (+)

15916912 .. 15918986

Gene Structure 2075 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGACCAGAATTTCAATAAAAAAAACTAGTCCGCTATTTACTGCCGACGTGCCAATGTTGTATGTGAACACCTGCACAGCATGCATGACTGCTAGTTGCTGCAAACTTTCACAGACCAGCCACCAGCGCACCTCCGCCAATCAACCATCCCGAATTCCAATGCCGACGTCGTCTTCGTTCTCGCTCTTGCTAATGACGACGATGCTTTGGACGCTCGCTTCTGCCTTTATGAATCCCCGAACTTTTCTTCAGCTGGGGAGCTCGTCCGGAGCCAGAGGCACTGGCAATTACTTGACGACGGAGGAGTTCTGGTTCGATCAGACTCTCGACCACTTCTCGCCCTACGACCGCCGCAAATTCCCGCAGCGCTACTATGAATTTCTCGACTACTTCAGAACGCCTGACGGACCCATTTTTCTCAGAATTTGTGGAGAAGCGGCGTGCAGCGGCATTGCTAACGATTACCTTAGTGTGTTGGCTAAGAAGTTTGGGGCAGCTGTGGTTTCGCCTGAGCATCGATACTATGGAAAAAGTTCTCCCTTCAAATCGCATACAACGGAGAATTTGAGGTACTTGTCATCCAAGCAAGCTCTTTTCGATTTGGCAGTTTTTCGTGAGTTTTACCAGAATTCGTTAAATGGGAAGCTGAATAAGACCAAGGGTGAAAATCCATGGTTTGTGTTTGGTGTTTCGTATGCGGGAGCTCTTAGTGCGTGGTTTCGGGTTAAATTCCCACATTTGACATGTGGAAGTGTTGCAAGTTCGGCAGTTGTTGAAGCTGTTTATGAATTCACTGAATTTGACCAGCAGGTTGGTGAGTCTGCAGGTCCACAATGTAAAGCTGCATTGCAAGAAACTAAACGTCTTGTTGAACAAAGGCTTTCTACTGACCGGAAAGCAGTGAAGGCGTTGTATGGTGCAACGCAGTCTTTGTGCAGCTTGATATTGATGGCGATTTTATGTATTTTCTGGCGGATGCTGCTGGTACAGTGTTTCAATCTGGAATTCCAGATAAGTTATGCTCCCCTCTTGTTCAAGCAAAGACAAATGAAGAGGATTTGGTGGAAACATATGCTAAATACGTTAAAGATCATTATCTGGGAAGTTTTGGCGTTGATGTTGAAACATATAATCAGAAGCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004177 GO:0006508 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0008239 GO:0009553 GO:0009561 GO:0016787 GO:0019538 GO:0032501 GO:0032502 GO:0043170 GO:0044238 GO:0048229 GO:0048856 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S28

Protein Analysis

382

Amino Acids

43.41

Weight (kDa)

9.43

Isoelectric Point (pI)

40.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S28	PF05577	107 - 302	4.8e-53	Serine carboxypeptidase S28

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010609)

Species	Orthologous Gene IDs
pyrus_communis	pycom15g21880
rosa_chinensis	RchiOBHm_Chr7g0191851 RchiOBHm_Chr7g0202241
rosa_multiflora	Rmu_sc0001659.1_g000041
rosa_roxburghii	Rroxscaffold_7G00195000
rosa_rugosa	Rorug02G0274000
rosa_samantha	Rh1AG274500 Rh1BG200400 Rh1DG069000 Rh2BG228500 Rh2CG233000 Rh3BG311900 Rh4AG236300 Rh4BG146100 Rh5AG221300 Rh5AG392900 Rh5BG251600 Rh5CG382600 Rh5CG532400 Rh6BG243100 Rh7CG368700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	80
AatII	GACGTC	1 cut(s)	170
Acc36I	ACCTGC	3 cut(s)	80, 799, 815
AccIII	TCCGGA	1 cut(s)	266
AciI	CCGC	9 cut(s)	32, 135, 349, 352, 362, 437, 447, 698, 973
AcuI	CTGAAG	2 cut(s)	233, 376
AcyI	GRCGYC	1 cut(s)	167
AfaI	GTAC	2 cut(s)	572, 987
AfeI	AGCGCT	1 cut(s)	368
AflIII	ACRYGT	1 cut(s)	743
AgsI	TTSAA	7 cut(s)	15, 544, 776, 872, 997, 1036, 1123
AhlI	ACTAGT	1 cut(s)	26
AjiI	CACGTC	1 cut(s)	49
AloI	GAACNNNNNNTCC	2 cut(s)	296, 328
AluBI	AGCT	9 cut(s)	253, 261, 497, 590, 646, 704, 779, 842, 939
AluI	AGCT	9 cut(s)	253, 261, 497, 590, 646, 704, 779, 842, 939
Alw21I	GWGCWC	2 cut(s)	263, 706
Aor13HI	TCCGGA	1 cut(s)	266
Aor51HI	AGCGCT	1 cut(s)	368
ApeKI	GCWGC	7 cut(s)	99, 364, 444, 494, 842, 936, 979
ArsI	GACNNNNNNTTYG	2 cut(s)	157, 189
Asp700I	GAANNNNTTC	1 cut(s)	532
AspLEI	GCGC	2 cut(s)	129, 369
AspS9I	GGNCC	2 cut(s)	407, 827
AsuHPI	GGTGA	2 cut(s)	674, 827
AvaII	GGWCC	2 cut(s)	407, 827
BanII	GRGCYC	2 cut(s)	263, 706
BbsI	GAAGAC	1 cut(s)	165
Bbv12I	GWGCWC	2 cut(s)	263, 706
BbvI	GCAGC	7 cut(s)	86, 376, 456, 506, 829, 948, 966
BccI	CCATC	2 cut(s)	154, 943
BcuI	ACTAGT	1 cut(s)	26
BfaI	CTAG	2 cut(s)	27, 93
BfmI	CTRYAG	1 cut(s)	822
BfoI	RGCGCY	1 cut(s)	370
BfuAI	ACCTGC	3 cut(s)	80, 799, 815
Bme18I	GGWCC	2 cut(s)	407, 827
BmgBI	CACGTC	1 cut(s)	49
BmgT120I	GGNCC	2 cut(s)	407, 827
BmiI	GGNNCC	2 cut(s)	271, 409
BmsI	GCATC	3 cut(s)	192, 523, 966
BpiI	GAAGAC	1 cut(s)	165
Bpu10I	CCTNAGC	1 cut(s)	510
Bsa29I	ATCGAT	1 cut(s)	517
BsaBI	GATNNNNATC	1 cut(s)	1094
BsaHI	GRCGYC	1 cut(s)	167
BsaJI	CCNNGG	2 cut(s)	657, 671
BsaWI	WCCGGW	2 cut(s)	266, 891
BsaXI	ACNNNNNCTCC	2 cut(s)	296, 326
Bse1I	ACTGG	1 cut(s)	286
Bse3DI	GCAATG	2 cut(s)	450, 845
Bse8I	GATNNNNATC	1 cut(s)	1094
BseAI	TCCGGA	1 cut(s)	266
BseCI	ATCGAT	1 cut(s)	517
BseDI	CCNNGG	2 cut(s)	657, 671
BseGI	GGATG	3 cut(s)	146, 578, 981
BseJI	GATNNNNATC	1 cut(s)	1094
BseMI	GCAATG	2 cut(s)	450, 845
BseMII	CTCAG	2 cut(s)	433, 501
BseNI	ACTGG	1 cut(s)	286
BseRI	GAGGAG	1 cut(s)	317
BseXI	GCAGC	7 cut(s)	86, 376, 456, 506, 829, 948, 966
BseYI	CCCAGC	1 cut(s)	253
BsgI	GTGCAG	3 cut(s)	58, 463, 955
Bsh1285I	CGRYCG	1 cut(s)	349
BshVI	ATCGAT	1 cut(s)	517
BsiEI	CGRYCG	1 cut(s)	349
BsiHKAI	GWGCWC	2 cut(s)	263, 706
BsiSI	CCGG	2 cut(s)	267, 892
Bsp1286I	GDGCHC	2 cut(s)	263, 706
Bsp13I	TCCGGA	1 cut(s)	266
Bsp143I	GATC	2 cut(s)	316, 1089
Bsp19I	CCATGG	1 cut(s)	671
BspACI	CCGC	9 cut(s)	32, 135, 349, 352, 362, 437, 447, 698, 973
BspCNI	CTCAG	2 cut(s)	432, 502
BspDI	ATCGAT	1 cut(s)	517
BspEI	TCCGGA	1 cut(s)	266
BspLI	GGNNCC	2 cut(s)	271, 409
BspMAI	CTGCAG	1 cut(s)	826
BspMI	ACCTGC	3 cut(s)	80, 799, 815
BsrDI	GCAATG	2 cut(s)	450, 845
BsrI	ACTGG	1 cut(s)	286
BssECI	CCNNGG	2 cut(s)	657, 671
BssMI	GATC	2 cut(s)	316, 1089
BssNI	GRCGYC	1 cut(s)	167
BssT1I	CCWWGG	2 cut(s)	657, 671
Bst4CI	ACNGT	1 cut(s)	990
Bst6I	CTCTTC	1 cut(s)	1046
BstACI	GRCGYC	1 cut(s)	167
BstAPI	GCANNNNNTGC	1 cut(s)	81
BstC8I	GCNNGC	4 cut(s)	82, 216, 442, 588
BstDEI	CTNAG	5 cut(s)	419, 467, 480, 510, 707
BstDSI	CCRYGG	1 cut(s)	671
BstF5I	GGATG	3 cut(s)	146, 578, 981
BstH2I	RGCGCY	1 cut(s)	370
BstHHI	GCGC	2 cut(s)	129, 369
BstKTI	GATC	2 cut(s)	319, 1092
BstMBI	GATC	2 cut(s)	316, 1089
BstMCI	CGRYCG	1 cut(s)	349
BstMWI	GCNNNNNNNGC	7 cut(s)	81, 126, 211, 710, 764, 905, 979
BstNSI	RCATGY	2 cut(s)	84, 747
BstSFI	CTRYAG	1 cut(s)	822
BstV1I	GCAGC	7 cut(s)	86, 376, 456, 506, 829, 948, 966
BstV2I	GAAGAC	1 cut(s)	165
BstXI	CCANNNNNNTGG	1 cut(s)	812
Bsu15I	ATCGAT	1 cut(s)	517
BsuTUI	ATCGAT	1 cut(s)	517
BtgI	CCRYGG	1 cut(s)	671
BtrI	CACGTC	1 cut(s)	49
BtsCI	GGATG	3 cut(s)	146, 578, 981
BtsI	GCAGTG	1 cut(s)	906
BtsIMutI	CAGTG	4 cut(s)	279, 792, 906, 995
BveI	ACCTGC	3 cut(s)	80, 799, 815
Cac8I	GCNNGC	4 cut(s)	82, 216, 442, 588
CfoI	GCGC	2 cut(s)	129, 369
Cfr13I	GGNCC	2 cut(s)	407, 827
ClaI	ATCGAT	1 cut(s)	517
CseI	GACGC	1 cut(s)	220
Csp6I	GTAC	2 cut(s)	571, 986
CviAII	CATG	4 cut(s)	81, 85, 672, 744
CviQI	GTAC	2 cut(s)	571, 986
DdeI	CTNAG	5 cut(s)	419, 467, 480, 510, 707
DpnI	GATC	2 cut(s)	318, 1091
DpnII	GATC	2 cut(s)	316, 1089
Eam1104I	CTCTTC	1 cut(s)	1046
EarI	CTCTTC	1 cut(s)	1046
EciI	GGCGGA	2 cut(s)	124, 988
Ecl136II	GAGCTC	2 cut(s)	261, 704
Eco130I	CCWWGG	2 cut(s)	657, 671
Eco24I	GRGCYC	2 cut(s)	263, 706
Eco47I	GGWCC	2 cut(s)	407, 827
Eco47III	AGCGCT	1 cut(s)	368
Eco53kI	GAGCTC	2 cut(s)	261, 704
Eco57I	CTGAAG	2 cut(s)	233, 376
EcoICRI	GAGCTC	2 cut(s)	261, 704
EcoRI	GAATTC	4 cut(s)	153, 628, 788, 1004
EcoT14I	CCWWGG	2 cut(s)	657, 671
EcoT22I	ATGCAT	1 cut(s)	86
EcoT38I	GRGCYC	2 cut(s)	263, 706
ErhI	CCWWGG	2 cut(s)	657, 671
FaeI	CATG	4 cut(s)	84, 88, 675, 747
FatI	CATG	4 cut(s)	80, 84, 671, 743
FauI	CCCGC	2 cut(s)	369, 691
FauNDI	CATATG	1 cut(s)	1071
FokI	GGATG	3 cut(s)	133, 565, 988
FriOI	GRGCYC	2 cut(s)	263, 706
FspBI	CTAG	2 cut(s)	27, 93
GlaI	GCGC	2 cut(s)	128, 368
GsaI	CCCAGC	1 cut(s)	257
HaeII	RGCGCY	1 cut(s)	370
HapII	CCGG	2 cut(s)	267, 892
HgaI	GACGC	1 cut(s)	220
HhaI	GCGC	2 cut(s)	129, 369
Hin1I	GRCGYC	1 cut(s)	167
Hin1II	CATG	4 cut(s)	84, 88, 675, 747
Hin6I	GCGC	2 cut(s)	127, 367
HinP1I	GCGC	2 cut(s)	127, 367
HinfI	GANTC	3 cut(s)	232, 322, 818
HpaII	CCGG	2 cut(s)	267, 892
HphI	GGTGA	2 cut(s)	674, 827
Hpy166II	GTNNAC	2 cut(s)	67, 830
Hpy188I	TCNGA	4 cut(s)	321, 395, 422, 1136
Hpy188III	TCNNGA	7 cut(s)	150, 267, 326, 383, 614, 1001, 1009
Hpy8I	GTNNAC	2 cut(s)	67, 830
Hpy99I	CGWCG	5 cut(s)	50, 169, 172, 202, 301
HpyAV	CCTTC	2 cut(s)	550, 898
HpyCH4III	ACNGT	1 cut(s)	990
HpyCH4IV	ACGT	4 cut(s)	48, 167, 862, 1082
HpyF10VI	GCNNNNNNNGC	7 cut(s)	81, 126, 211, 710, 764, 905, 979
HpyF3I	CTNAG	5 cut(s)	419, 467, 480, 510, 707
HpySE526I	ACGT	4 cut(s)	48, 167, 862, 1082
Hsp92I	GRCGYC	1 cut(s)	167
Hsp92II	CATG	4 cut(s)	84, 88, 675, 747
HspAI	GCGC	2 cut(s)	127, 367
Kpn2I	TCCGGA	1 cut(s)	266
Kzo9I	GATC	2 cut(s)	316, 1089
LmnI	GCTCC	4 cut(s)	258, 269, 701, 1027
Lsp1109I	GCAGC	7 cut(s)	86, 376, 456, 506, 829, 948, 966
LweI	GCATC	3 cut(s)	192, 523, 966
MaeI	CTAG	2 cut(s)	27, 93
MaeII	ACGT	4 cut(s)	48, 167, 862, 1082
MalI	GATC	2 cut(s)	318, 1091
MboI	GATC	2 cut(s)	316, 1089
MboII	GAAGA	3 cut(s)	165, 239, 1063
MhlI	GDGCHC	2 cut(s)	263, 706
MlyI	GAGTC	2 cut(s)	316, 827
MnlI	CCTC	6 cut(s)	142, 269, 295, 561, 1037, 1047
Mph1103I	ATGCAT	1 cut(s)	86
MroI	TCCGGA	1 cut(s)	266
MroXI	GAANNNNTTC	1 cut(s)	532
MseI	TTAA	3 cut(s)	635, 726, 1085
MspA1I	CMGCKG	3 cut(s)	253, 447, 497
MspI	CCGG	2 cut(s)	267, 892
MwoI	GCNNNNNNNGC	7 cut(s)	81, 126, 211, 710, 764, 905, 979
NcoI	CCATGG	1 cut(s)	671
NdeI	CATATG	1 cut(s)	1071
NdeII	GATC	2 cut(s)	316, 1089
NlaIII	CATG	4 cut(s)	84, 88, 675, 747
NlaIV	GGNNCC	2 cut(s)	271, 409
NsiI	ATGCAT	1 cut(s)	86
NspI	RCATGY	2 cut(s)	84, 747
PaeI	GCATGC	1 cut(s)	84
PaqCI	CACCTGC	1 cut(s)	80
PciI	ACATGT	1 cut(s)	743
PcsI	WCGNNNNNNNCGW	1 cut(s)	173
PdmI	GAANNNNTTC	1 cut(s)	532
PfeI	GAWTC	1 cut(s)	232
PflFI	GACNNNGTC	1 cut(s)	169
PleI	GAGTC	2 cut(s)	316, 826
PpsI	GAGTC	2 cut(s)	316, 826
PscI	ACATGT	1 cut(s)	743
Psp124BI	GAGCTC	2 cut(s)	263, 706
PspFI	CCCAGC	1 cut(s)	253
PspN4I	GGNNCC	2 cut(s)	271, 409
PspPI	GGNCC	2 cut(s)	407, 827
PstI	CTGCAG	1 cut(s)	826
PsyI	GACNNNGTC	1 cut(s)	169
PvuII	CAGCTG	2 cut(s)	253, 497
RsaI	GTAC	2 cut(s)	572, 987
RsaNI	GTAC	2 cut(s)	571, 986
SacI	GAGCTC	2 cut(s)	263, 706
SaqAI	TTAA	3 cut(s)	635, 726, 1085
Sau3AI	GATC	2 cut(s)	316, 1089
Sau96I	GGNCC	2 cut(s)	407, 827
SchI	GAGTC	2 cut(s)	316, 827
SduI	GDGCHC	2 cut(s)	263, 706
SfaNI	GCATC	3 cut(s)	192, 523, 966
SfcI	CTRYAG	1 cut(s)	822
SinI	GGWCC	2 cut(s)	407, 827
SpeI	ACTAGT	1 cut(s)	26
SphI	GCATGC	1 cut(s)	84
SsiI	CCGC	9 cut(s)	32, 135, 349, 352, 362, 437, 447, 698, 973
SspMI	CTAG	2 cut(s)	27, 93
SstI	GAGCTC	2 cut(s)	263, 706
StyI	CCWWGG	2 cut(s)	657, 671
TaaI	ACNGT	1 cut(s)	990
TaiI	ACGT	4 cut(s)	51, 170, 865, 1085
TaqI	TCGA	5 cut(s)	315, 327, 384, 517, 597
TauI	GCSGC	3 cut(s)	354, 440, 450
TfiI	GAWTC	1 cut(s)	232
Tru1I	TTAA	3 cut(s)	635, 726, 1085
Tru9I	TTAA	3 cut(s)	635, 726, 1085
TscAI	CASTG	4 cut(s)	286, 799, 906, 995
TseI	GCWGC	7 cut(s)	99, 364, 444, 494, 842, 936, 979
TspDTI	ATGAA	4 cut(s)	245, 390, 801, 1064
TspGWI	ACGGA	3 cut(s)	314, 420, 572
TspRI	CASTG	4 cut(s)	286, 799, 906, 995
Tth111I	GACNNNGTC	1 cut(s)	169
VpaK11BI	GGWCC	2 cut(s)	407, 827
XceI	RCATGY	2 cut(s)	84, 747
XmnI	GAANNNNTTC	1 cut(s)	532
XspI	CTAG	2 cut(s)	27, 93
ZraI	GACGTC	1 cut(s)	168
Zsp2I	ATGCAT	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.