Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0009081

Physical Location & Seq

Genomic Coordinates Reverse (-)

16581937 .. 16582692

Gene Structure 756 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGAGTCGTGGGATTTCGACATCGTGAAGGCAGAGAAAGCCAGCGCCATGCGGAGGTACAACCGCCTCCGCACTGCCGCAAAGCTCCTTCGCTCCGCGGAAATTGGCGCCGGCGTCCTCTTCCTCTCCTGGACATTCGCTCGCCTCCCCTTCGCCCTCACCCTCTCCCTCAACTACTTCCTCCTCCTCTCCGGCGTCGTTTCGAGCCCCCTCTTCGTCTTCCTCCTCTGCCACGCCATCATCGCCTCTTTAGTCCTCAAGTCCCGCCACTTCAGCTCGGCCGATAGTAATAACAACGCCGTGGAGGCCGAACTCTACGGGGAGTTAGTCGAAAGCAGCGCCGTCGGAACGGACAGTAGTACCAAGTCTCGTTTAGAAGACGACGTCGTCGGCTCGCGCGGGGCAGAGGAGGTTGTGTACCAGGACAAGCAAACCGTTTCGGAGGTGAACTCGGCGGATCCTAAACAGGAAACCGAGTCGAACTCGGACTCAGACTCGGAGATTACGAAGAAGATTCGGAGGACGAAATCGGAGAAGTTCGGGAGGGAGCGAAAACCGGAGAAGCTGCGCAGATCGGAGACGGATATTGGCCGGAAAATCGCGAGGCCCGGCGAGGAACGTGCGGGGGAAGATACGGAGGAGGAGGACGATTTGAGCAACGAGGAGTTTCAGCGATCCATTGAAGCTTTCATCGAGAAGCAGCTGAATTTTCGTCGCCAGGAATCTGTGGCCATTGTTCTTCAGAACCAGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4408

Protein Analysis

252

Amino Acids

28.24

Weight (kDa)

5.2

Isoelectric Point (pI)

62.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009081)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66440
fragaria_vesca	FvH4_1g12780 FvH4_7g02350
malus_domestica	MD02G1143400.v1.1
prunus_persica	Prupe.7G158300_v2.0.a1
pyrus_communis	pycom15g22450
rosa_chinensis	RchiOBHm_Chr2g0100901
rosa_laevigata	RLG00000017022
rosa_multiflora	Rmu_sc0000924.1_g000055 Rmu_sc0001659.1_g000047 Rmu_sc0002601.1_g000002 Rmu_sc0005742.1_g000014 Rmu_sc0008053.1_g000019
rosa_roxburghii	Rroxscaffold_2G00141750 Rroxscaffold_3G00251430
rosa_rugosa	Rorug02G0093600
rosa_samantha	Rh2AG141100 Rh2BG146300 Rh2CG147600 Rh2DG146800 Rh7CG310400
rosa_wichuraiana	Rw2G011070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	386
AatII	GACGTC	1 cut(s)	387
Acc16I	TGCGCA	1 cut(s)	569
AccB1I	GGYRCC	1 cut(s)	107
AccII	CGCG	4 cut(s)	98, 397, 399, 602
AclWI	GGATC	3 cut(s)	452, 465, 669
AcoI	YGGCCR	3 cut(s)	279, 589, 729
AcsI	RAATTY	1 cut(s)	706
AcuI	CTGAAG	2 cut(s)	256, 725
AcyI	GRCGYC	4 cut(s)	108, 114, 195, 384
AfaI	GTAC	3 cut(s)	59, 361, 419
AfiI	CCNNNNNNNGG	1 cut(s)	54
AgsI	TTSAA	1 cut(s)	683
AjnI	CCWGG	3 cut(s)	128, 420, 717
AluBI	AGCT	6 cut(s)	85, 276, 565, 686, 703, 753
AluI	AGCT	6 cut(s)	85, 276, 565, 686, 703, 753
Alw26I	GTCTC	2 cut(s)	372, 572
AlwI	GGATC	3 cut(s)	452, 465, 669
AoxI	GGCC	5 cut(s)	279, 306, 589, 605, 729
ApeKI	GCWGC	3 cut(s)	336, 565, 700
ApoI	RAATTY	1 cut(s)	706
AspLEI	GCGC	5 cut(s)	47, 110, 341, 399, 570
AspS9I	GGNCC	1 cut(s)	606
AsuC2I	CCSGG	1 cut(s)	609
AsuHPI	GGTGA	2 cut(s)	151, 457
BaeI	ACNNNNGTAYC	2 cut(s)	343, 376
BalI	TGGCCA	1 cut(s)	731
BamHI	GGATCC	1 cut(s)	457
BanI	GGYRCC	1 cut(s)	107
BanII	GRGCYC	1 cut(s)	209
BbsI	GAAGAC	2 cut(s)	211, 384
BbvI	GCAGC	3 cut(s)	348, 552, 712
BccI	CCATC	1 cut(s)	245
BceAI	ACGGC	2 cut(s)	284, 326
BcgI	CGANNNNNNTGC	4 cut(s)	325, 359, 602, 636
BciT130I	CCWGG	3 cut(s)	130, 422, 719
BcnI	CCSGG	1 cut(s)	609
BcoDI	GTCTC	2 cut(s)	372, 572
BfoI	RGCGCY	3 cut(s)	48, 111, 342
BglI	GCCNNNNNGGC	1 cut(s)	305
BisI	GCNGC	4 cut(s)	78, 337, 566, 701
BlsI	GCNGC	4 cut(s)	79, 338, 567, 702
Bme1390I	CCNGG	4 cut(s)	130, 422, 609, 719
BmgT120I	GGNCC	1 cut(s)	606
BmiI	GGNNCC	2 cut(s)	109, 459
BmrFI	CCNGG	4 cut(s)	130, 422, 609, 719
BpiI	GAAGAC	2 cut(s)	211, 384
BplI	GAGNNNNNCTC	4 cut(s)	434, 466, 467, 499
BpuEI	CTTGAG	1 cut(s)	242
BpuMI	CCSGG	1 cut(s)	609
BsaHI	GRCGYC	4 cut(s)	108, 114, 195, 384
BsaJI	CCNNGG	2 cut(s)	96, 300
BsaWI	WCCGGW	1 cut(s)	556
BsaXI	ACNNNNNCTCC	2 cut(s)	401, 431
Bsc4I	CCNNNNNNNGG	1 cut(s)	54
Bse118I	RCCGGY	1 cut(s)	110
BseBI	CCWGG	3 cut(s)	130, 422, 719
BseDI	CCNNGG	2 cut(s)	96, 300
BseLI	CCNNNNNNNGG	1 cut(s)	54
BseMII	CTCAG	1 cut(s)	504
BseRI	GAGGAG	7 cut(s)	173, 176, 215, 422, 653, 656, 677
BseX3I	CGGCCG	1 cut(s)	279
BseXI	GCAGC	3 cut(s)	348, 552, 712
Bsh1236I	CGCG	4 cut(s)	98, 397, 399, 602
Bsh1285I	CGRYCG	1 cut(s)	282
BshFI	GGCC	5 cut(s)	281, 308, 591, 607, 731
BshNI	GGYRCC	1 cut(s)	107
BsiEI	CGRYCG	1 cut(s)	282
BsiSI	CCGG	5 cut(s)	111, 192, 557, 592, 609
BslFI	GGGAC	1 cut(s)	247
BslI	CCNNNNNNNGG	1 cut(s)	54
BsmAI	GTCTC	2 cut(s)	372, 572
BsmBI	CGTCTC	1 cut(s)	572
BsmFI	GGGAC	1 cut(s)	247
BsnI	GGCC	5 cut(s)	281, 308, 591, 607, 731
Bsp1286I	GDGCHC	1 cut(s)	209
Bsp143I	GATC	3 cut(s)	457, 572, 674
Bsp68I	TCGCGA	1 cut(s)	602
BspANI	GGCC	5 cut(s)	281, 308, 591, 607, 731
BspCNI	CTCAG	1 cut(s)	503
BspFNI	CGCG	4 cut(s)	98, 397, 399, 602
BspLI	GGNNCC	2 cut(s)	109, 459
BspPI	GGATC	3 cut(s)	452, 465, 669
BspT107I	GGYRCC	1 cut(s)	107
BsrFI	RCCGGY	1 cut(s)	110
BssAI	RCCGGY	1 cut(s)	110
BssECI	CCNNGG	2 cut(s)	96, 300
BssMI	GATC	3 cut(s)	457, 572, 674
BssNI	GRCGYC	4 cut(s)	108, 114, 195, 384
Bst2UI	CCWGG	3 cut(s)	130, 422, 719
Bst4CI	ACNGT	2 cut(s)	356, 436
Bst6I	CTCTTC	2 cut(s)	125, 218
BstACI	GRCGYC	4 cut(s)	108, 114, 195, 384
BstC8I	GCNNGC	4 cut(s)	43, 112, 142, 395
BstDEI	CTNAG	1 cut(s)	490
BstDSI	CCRYGG	2 cut(s)	96, 300
BstFNI	CGCG	4 cut(s)	98, 397, 399, 602
BstH2I	RGCGCY	3 cut(s)	48, 111, 342
BstHHI	GCGC	5 cut(s)	47, 110, 341, 399, 570
BstKTI	GATC	3 cut(s)	460, 575, 677
BstMAI	GTCTC	2 cut(s)	372, 572
BstMBI	GATC	3 cut(s)	457, 572, 674
BstMCI	CGRYCG	1 cut(s)	282
BstMWI	GCNNNNNNNGC	4 cut(s)	38, 242, 273, 305
BstNI	CCWGG	3 cut(s)	130, 422, 719
BstSCI	CCNGG	4 cut(s)	128, 420, 607, 717
BstUI	CGCG	4 cut(s)	98, 397, 399, 602
BstV1I	GCAGC	3 cut(s)	348, 552, 712
BstV2I	GAAGAC	2 cut(s)	211, 384
BstX2I	RGATCY	1 cut(s)	457
BstYI	RGATCY	1 cut(s)	457
BstZI	CGGCCG	1 cut(s)	279
BsuRI	GGCC	5 cut(s)	281, 308, 591, 607, 731
BtgI	CCRYGG	2 cut(s)	96, 300
BtgZI	GCGATG	1 cut(s)	226
BtsI	GCAGTG	1 cut(s)	72
BtsIMutI	CAGTG	1 cut(s)	72
BtuMI	TCGCGA	1 cut(s)	602
Cac8I	GCNNGC	4 cut(s)	43, 112, 142, 395
CfoI	GCGC	5 cut(s)	47, 110, 341, 399, 570
Cfr10I	RCCGGY	1 cut(s)	110
Cfr13I	GGNCC	1 cut(s)	606
Cfr42I	CCGCGG	1 cut(s)	99
CseI	GACGC	2 cut(s)	103, 184
Csp6I	GTAC	3 cut(s)	58, 360, 418
CviAII	CATG	1 cut(s)	49
CviQI	GTAC	3 cut(s)	58, 360, 418
DdeI	CTNAG	1 cut(s)	490
DinI	GGCGCC	1 cut(s)	109
DpnI	GATC	3 cut(s)	459, 574, 676
DpnII	GATC	3 cut(s)	457, 572, 674
DrdI	GACNNNNNNGTC	1 cut(s)	386
DseDI	GACNNNNNNGTC	1 cut(s)	386
EaeI	YGGCCR	3 cut(s)	279, 589, 729
EagI	CGGCCG	1 cut(s)	279
Eam1104I	CTCTTC	2 cut(s)	125, 218
EarI	CTCTTC	2 cut(s)	125, 218
EciI	GGCGGA	1 cut(s)	470
EclXI	CGGCCG	1 cut(s)	279
Eco24I	GRGCYC	1 cut(s)	209
Eco52I	CGGCCG	1 cut(s)	279
Eco57I	CTGAAG	2 cut(s)	256, 725
EcoRII	CCWGG	3 cut(s)	128, 420, 717
EcoT38I	GRGCYC	1 cut(s)	209
EgeI	GGCGCC	1 cut(s)	109
EheI	GGCGCC	1 cut(s)	109
Esp3I	CGTCTC	1 cut(s)	572
FaeI	CATG	1 cut(s)	52
FaiI	YATR	1 cut(s)	50
FaqI	GGGAC	1 cut(s)	247
FatI	CATG	1 cut(s)	48
FauI	CCCGC	3 cut(s)	272, 392, 616
Fnu4HI	GCNGC	4 cut(s)	78, 337, 566, 701
FriOI	GRGCYC	1 cut(s)	209
Fsp4HI	GCNGC	4 cut(s)	78, 337, 566, 701
FspI	TGCGCA	1 cut(s)	569
GlaI	GCGC	5 cut(s)	46, 109, 340, 398, 569
GluI	GCNGC	4 cut(s)	78, 337, 566, 701
HaeII	RGCGCY	3 cut(s)	48, 111, 342
HaeIII	GGCC	5 cut(s)	281, 308, 591, 607, 731
HapII	CCGG	5 cut(s)	111, 192, 557, 592, 609
HgaI	GACGC	2 cut(s)	103, 184
HhaI	GCGC	5 cut(s)	47, 110, 341, 399, 570
Hin1I	GRCGYC	4 cut(s)	108, 114, 195, 384
Hin1II	CATG	1 cut(s)	52
Hin6I	GCGC	5 cut(s)	45, 108, 339, 397, 568
HinP1I	GCGC	5 cut(s)	45, 108, 339, 397, 568
HindIII	AAGCTT	1 cut(s)	684
HinfI	GANTC	6 cut(s)	5, 476, 488, 494, 514, 722
HpaII	CCGG	5 cut(s)	111, 192, 557, 592, 609
HphI	GGTGA	2 cut(s)	151, 457
Hpy166II	GTNNAC	2 cut(s)	418, 448
Hpy188I	TCNGA	9 cut(s)	347, 442, 487, 493, 499, 519, 532, 577, 744
Hpy188III	TCNNGA	4 cut(s)	25, 541, 601, 694
Hpy8I	GTNNAC	2 cut(s)	418, 448
Hpy99I	CGWCG	6 cut(s)	200, 347, 386, 389, 392, 717
HpyAV	CCTTC	3 cut(s)	22, 98, 160
HpyCH4III	ACNGT	2 cut(s)	356, 436
HpyCH4IV	ACGT	2 cut(s)	384, 619
HpyF10VI	GCNNNNNNNGC	4 cut(s)	38, 242, 273, 305
HpyF3I	CTNAG	1 cut(s)	490
HpySE526I	ACGT	2 cut(s)	384, 619
Hsp92I	GRCGYC	4 cut(s)	108, 114, 195, 384
Hsp92II	CATG	1 cut(s)	52
HspAI	GCGC	5 cut(s)	45, 108, 339, 397, 568
KasI	GGCGCC	1 cut(s)	107
KroI	GCCGGC	1 cut(s)	110
KroNI	GCCGGC	1 cut(s)	112
KspI	CCGCGG	1 cut(s)	99
Kzo9I	GATC	3 cut(s)	457, 572, 674
LmnI	GCTCC	3 cut(s)	90, 98, 547
Lsp1109I	GCAGC	3 cut(s)	348, 552, 712
MaeII	ACGT	2 cut(s)	384, 619
MalI	GATC	3 cut(s)	459, 574, 676
MboI	GATC	3 cut(s)	457, 572, 674
MboII	GAAGA	8 cut(s)	112, 205, 211, 389, 520, 523, 641, 731
MflI	RGATCY	1 cut(s)	457
MhlI	GDGCHC	1 cut(s)	209
MlsI	TGGCCA	1 cut(s)	731
MluCI	AATT	2 cut(s)	102, 706
MluNI	TGGCCA	1 cut(s)	731
Mly113I	GGCGCC	1 cut(s)	108
MlyI	GAGTC	4 cut(s)	14, 482, 485, 488
MmeI	TCCRAC	1 cut(s)	325
Mox20I	TGGCCA	1 cut(s)	731
MreI	CGCCGGCG	1 cut(s)	110
MroNI	GCCGGC	1 cut(s)	110
MscI	TGGCCA	1 cut(s)	731
Msp20I	TGGCCA	1 cut(s)	731
MspA1I	CMGCKG	2 cut(s)	98, 703
MspI	CCGG	5 cut(s)	111, 192, 557, 592, 609
MspR9I	CCNGG	4 cut(s)	130, 422, 609, 719
MvaI	CCWGG	3 cut(s)	130, 422, 719
MvnI	CGCG	4 cut(s)	98, 397, 399, 602
MwoI	GCNNNNNNNGC	4 cut(s)	38, 242, 273, 305
NaeI	GCCGGC	1 cut(s)	112
NarI	GGCGCC	1 cut(s)	108
NciI	CCSGG	1 cut(s)	609
NdeII	GATC	3 cut(s)	457, 572, 674
NgoMIV	GCCGGC	1 cut(s)	110
NlaIII	CATG	1 cut(s)	52
NlaIV	GGNNCC	2 cut(s)	109, 459
NmeAIII	GCCGAG	2 cut(s)	257, 431
NruI	TCGCGA	1 cut(s)	602
NsbI	TGCGCA	1 cut(s)	569
PcsI	WCGNNNNNNNCGW	1 cut(s)	503
PdiI	GCCGGC	1 cut(s)	112
PfeI	GAWTC	2 cut(s)	514, 722
PflFI	GACNNNGTC	2 cut(s)	383, 386
PfoI	TCCNGGA	1 cut(s)	128
PkrI	GCNGC	4 cut(s)	79, 338, 567, 702
PleI	GAGTC	4 cut(s)	13, 482, 484, 488
PluTI	GGCGCC	1 cut(s)	111
PpsI	GAGTC	4 cut(s)	13, 482, 484, 488
Psp6I	CCWGG	3 cut(s)	128, 420, 717
PspGI	CCWGG	3 cut(s)	128, 420, 717
PspN4I	GGNNCC	2 cut(s)	109, 459
PspPI	GGNCC	1 cut(s)	606
PsuI	RGATCY	1 cut(s)	457
PsyI	GACNNNGTC	2 cut(s)	383, 386
PvuII	CAGCTG	1 cut(s)	703
RruI	TCGCGA	1 cut(s)	602
RsaI	GTAC	3 cut(s)	59, 361, 419
RsaNI	GTAC	3 cut(s)	58, 360, 418
SacII	CCGCGG	1 cut(s)	99
SatI	GCNGC	4 cut(s)	78, 337, 566, 701
Sau3AI	GATC	3 cut(s)	457, 572, 674
Sau96I	GGNCC	1 cut(s)	606
SchI	GAGTC	4 cut(s)	14, 482, 485, 488
ScrFI	CCNGG	4 cut(s)	130, 422, 609, 719
SduI	GDGCHC	1 cut(s)	209
SfoI	GGCGCC	1 cut(s)	109
Sfr303I	CCGCGG	1 cut(s)	99
SgrAI	CRCCGGYG	1 cut(s)	110
SgrBI	CCGCGG	1 cut(s)	99
SmlI	CTYRAG	1 cut(s)	257
SmoI	CTYRAG	1 cut(s)	257
Sse9I	AATT	2 cut(s)	102, 706
SspDI	GGCGCC	1 cut(s)	107
StyD4I	CCNGG	4 cut(s)	128, 420, 607, 717
TaaI	ACNGT	2 cut(s)	356, 436
TaiI	ACGT	2 cut(s)	387, 622
TaqI	TCGA	5 cut(s)	18, 203, 330, 479, 693
TasI	AATT	2 cut(s)	102, 706
TauI	GCSGC	1 cut(s)	80
TfiI	GAWTC	2 cut(s)	514, 722
TscAI	CASTG	1 cut(s)	79
TseI	GCWGC	3 cut(s)	336, 565, 700
TspDTI	ATGAA	1 cut(s)	679
TspGWI	ACGGA	3 cut(s)	365, 596, 650
TspRI	CASTG	1 cut(s)	79
Tth111I	GACNNNGTC	2 cut(s)	383, 386
XapI	RAATTY	1 cut(s)	706
ZraI	GACGTC	1 cut(s)	385

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.