pycom15g23260

Small nuclear ribonucleoprotein SM

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0002981
Physical Location & Seq
Forward (+)
17324876 .. 17326986
2111 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 375 bp
ATGAAATGTTCAGCTGTTGGATTAAGAACTTCCCAAAACCCTCCGTTCGAGATGAGCCGACCAATGGAGGAAGATGGTGCCAAGAACGAGGAAGAGGAATTCAACACAGGGCCACTTTCTGTCCTTATGATGAGTGTAAAAAATAATACTCAGGTGCTCATCAATTGCCGTAACAACCGAAAGCTTCTTGGCCGTGTGAGAGCATTTGACAGGCATTGCAACATGGTTCTGGAAAATGTCAGGGAGATGTGGACTGAGGTGCCGAAGACTGGAAAAGGCAAGAAAAAGGCCCAGCCGGTTAACAAAGACAGGTTCATCAGCAAGATGTTTCTCCGTGGGGACTCTGTTATCATCGTTCTTAGGAATCCGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
LSM

Protein Analysis

125

Amino Acids

14.24

Weight (kDa)

9.89

Isoelectric Point (pI)

44.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LSM PF01423 45 - 119 3e-18 LSM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 77, 259
AcoI YGGCCR 1 cut(s) 190
AcsI RAATTY 1 cut(s) 98
AfiI CCNNNNNNNGG 2 cut(s) 64, 269
AgsI TTSAA 1 cut(s) 103
AluBI AGCT 2 cut(s) 14, 184
AluI AGCT 2 cut(s) 14, 184
Alw21I GWGCWC 1 cut(s) 159
AoxI GGCC 3 cut(s) 110, 190, 288
ApoI RAATTY 1 cut(s) 98
AspS9I GGNCC 2 cut(s) 110, 289
BanI GGYRCC 2 cut(s) 77, 259
BbsI GAAGAC 1 cut(s) 272
Bbv12I GWGCWC 1 cut(s) 159
BccI CCATC 1 cut(s) 68
BceAI ACGGC 2 cut(s) 153, 177
BmgT120I GGNCC 2 cut(s) 110, 289
BmiI GGNNCC 2 cut(s) 79, 261
BpiI GAAGAC 1 cut(s) 272
BsaJI CCNNGG 1 cut(s) 334
Bsc4I CCNNNNNNNGG 2 cut(s) 64, 269
Bse118I RCCGGY 1 cut(s) 295
Bse1I ACTGG 1 cut(s) 274
Bse3DI GCAATG 1 cut(s) 214
BseDI CCNNGG 1 cut(s) 334
BseLI CCNNNNNNNGG 2 cut(s) 64, 269
BseMI GCAATG 1 cut(s) 214
BseMII CTCAG 2 cut(s) 164, 246
BseNI ACTGG 1 cut(s) 274
BseYI CCCAGC 1 cut(s) 291
BshFI GGCC 3 cut(s) 112, 192, 290
BshNI GGYRCC 2 cut(s) 77, 259
BsiHKAI GWGCWC 1 cut(s) 159
BsiSI CCGG 1 cut(s) 296
BslFI GGGAC 1 cut(s) 353
BslI CCNNNNNNNGG 2 cut(s) 64, 269
BsmFI GGGAC 1 cut(s) 353
BsnI GGCC 3 cut(s) 112, 192, 290
Bsp1286I GDGCHC 1 cut(s) 159
BspANI GGCC 3 cut(s) 112, 192, 290
BspCNI CTCAG 2 cut(s) 163, 247
BspLI GGNNCC 2 cut(s) 79, 261
BspT107I GGYRCC 2 cut(s) 77, 259
BsrDI GCAATG 1 cut(s) 214
BsrFI RCCGGY 1 cut(s) 295
BsrI ACTGG 1 cut(s) 274
BssAI RCCGGY 1 cut(s) 295
BssECI CCNNGG 1 cut(s) 334
Bst6I CTCTTC 1 cut(s) 87
BstDEI CTNAG 3 cut(s) 150, 255, 359
BstDSI CCRYGG 1 cut(s) 334
BstV2I GAAGAC 1 cut(s) 272
BsuRI GGCC 3 cut(s) 112, 192, 290
BtgI CCRYGG 1 cut(s) 334
Cfr10I RCCGGY 1 cut(s) 295
Cfr13I GGNCC 2 cut(s) 110, 289
CviAII CATG 1 cut(s) 223
CviJI RGCY 7 cut(s) 14, 57, 112, 184, 192, 290, 295
CviKI_1 RGCY 7 cut(s) 14, 57, 112, 184, 192, 290, 295
DdeI CTNAG 3 cut(s) 150, 255, 359
EaeI YGGCCR 1 cut(s) 190
Eam1104I CTCTTC 1 cut(s) 87
EarI CTCTTC 1 cut(s) 87
EcoRI GAATTC 1 cut(s) 98
FaeI CATG 1 cut(s) 226
FaiI YATR 2 cut(s) 128, 224
FaqI GGGAC 1 cut(s) 353
FatI CATG 1 cut(s) 222
GsaI CCCAGC 1 cut(s) 295
HaeIII GGCC 3 cut(s) 112, 192, 290
HapII CCGG 1 cut(s) 296
Hin1II CATG 1 cut(s) 226
HincII GTYRAC 1 cut(s) 301
HindII GTYRAC 1 cut(s) 301
HindIII AAGCTT 1 cut(s) 182
HinfI GANTC 2 cut(s) 341, 364
HpaI GTTAAC 1 cut(s) 301
HpaII CCGG 1 cut(s) 296
Hpy166II GTNNAC 2 cut(s) 252, 301
Hpy188I TCNGA 1 cut(s) 369
Hpy188III TCNNGA 2 cut(s) 49, 230
Hpy8I GTNNAC 2 cut(s) 252, 301
HpyCH4V TGCA 1 cut(s) 219
HpyF3I CTNAG 3 cut(s) 150, 255, 359
Hsp92II CATG 1 cut(s) 226
KspAI GTTAAC 1 cut(s) 301
LpnPI CCDG 9 cut(s) 93, 137, 196, 215, 226, 255, 295, 305, 309
MaeIII GTNAC 1 cut(s) 170
MboII GAAGA 3 cut(s) 83, 104, 277
MfeI CAATTG 1 cut(s) 163
MhlI GDGCHC 1 cut(s) 159
MluCI AATT 2 cut(s) 98, 163
MlyI GAGTC 1 cut(s) 335
MnlI CCTC 5 cut(s) 51, 61, 82, 88, 250
MseI TTAA 2 cut(s) 23, 300
MspA1I CMGCKG 1 cut(s) 14
MspI CCGG 1 cut(s) 296
MunI CAATTG 1 cut(s) 163
NlaIII CATG 1 cut(s) 226
NlaIV GGNNCC 2 cut(s) 79, 261
PfeI GAWTC 1 cut(s) 364
PleI GAGTC 1 cut(s) 335
PpsI GAGTC 1 cut(s) 335
PspFI CCCAGC 1 cut(s) 291
PspN4I GGNNCC 2 cut(s) 79, 261
PspPI GGNCC 2 cut(s) 110, 289
PvuII CAGCTG 1 cut(s) 14
SaqAI TTAA 2 cut(s) 23, 300
Sau96I GGNCC 2 cut(s) 110, 289
SchI GAGTC 1 cut(s) 335
SduI GDGCHC 1 cut(s) 159
SetI ASST 5 cut(s) 16, 156, 186, 261, 314
Sse9I AATT 2 cut(s) 98, 163
TaqI TCGA 1 cut(s) 48
TasI AATT 2 cut(s) 98, 163
TfiI GAWTC 1 cut(s) 364
Tru1I TTAA 2 cut(s) 23, 300
Tru9I TTAA 2 cut(s) 23, 300
TspDTI ATGAA 2 cut(s) 17, 304
TspGWI ACGGA 2 cut(s) 33, 323
XapI RAATTY 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.