Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0004099

Physical Location & Seq

Genomic Coordinates Forward (+)

33662689 .. 33663354

Gene Structure 666 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGAAGTGGAAAGCAAGGCCAAGCTATTCACAAAAAAGAAGAGGTTTTCTCACTCAACCATTCTCAGCACCATTTCCGTCTTCTCACTCTTTCTGATTCTTATCCTATTTCATGCACAACCCTCTCCTTCCTTCTCTCCTGCCTCAAAACCCCGAGACTCGAAACTCCGAAACTCGGTTACATTACTTCCTCTCAAAGACACAAGGTTTGCCAACACTGCAATGGAGGGAAACACTTGGTTCATGAGCTCCTTGAGTGACACATTTGAAGAAAATGAATCCGAATACCTTTATTTCCCTTCCGAGGCAACCAACGGAAGGCTACTGTACATCAAAGGGAACGACATAAAAGATGGCACCAAAACCTCATATGCCTTGGCATATCCTGATGGCTTACCATACTCCACCACGTTCTTGAAGGGCCTTGCGTTTGTATCCGACACATTCTATGACTACGGAAACTTGTGGCACGGGTTAACTGCCATGATGCCTTTCTTCGGTTGGTCTATGACAAATGGATGCGCAAAGCCATCAAGATTGGTACTTTTCCACTCGGGAGAGCTTAGAGTTGGAGAGAAAATGGGGTTGTGGATTCAGAATGTGATGCAAGCGAATTTCGGGCAAGTGCAGGTCGAAGAGTTCGAGAAGGGAGAAGGGCCTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF563

Protein Analysis

222

Amino Acids

24.96

Weight (kDa)

6.91

Isoelectric Point (pI)

35.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004099)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33590 AT4G33600
fragaria_vesca	FvH4_2g11820 FvH4_5g35970
malus_domestica	MD05G1047000.v1.1 MD08G1191500.v1.1 MD15G1380300.v1.1
prunus_persica	Prupe.1G526500_v2.0.a1 Prupe.8G066800_v2.0.a1
pyrus_communis	pycom15g34060
rosa_chinensis	RchiOBHm_Chr4g0390351 RchiOBHm_Chr7g0237711
rosa_laevigata	RLG00000000975 RLG00000009924
rosa_multiflora	Rmu_co8254707.1_g000001 Rmu_co8428079.1_g000001 Rmu_sc0029360.1_g000001 Rmu_sc0029361.1_g000001 Rmu_ssc0000067.1_g000045
rosa_roxburghii	Rroxscaffold_3G00223850 Rroxscaffold_5G00336450
rosa_rugosa	Rorug03G0330300 Rorug07G0306500
rosa_samantha	Rh4AG031800 Rh4BG026000 Rh4CG035000 Rh4DG027600 Rh7AG463300 Rh7BG433300 Rh7CG480200 Rh7DG449200
rosa_wichuraiana	Rw4G002530 Rw7G038330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	523
Acc36I	ACCTGC	1 cut(s)	619
AccB1I	GGYRCC	1 cut(s)	356
AcsI	RAATTY	1 cut(s)	613
AfaI	GTAC	2 cut(s)	329, 543
AfiI	CCNNNNNNNGG	4 cut(s)	175, 304, 318, 497
AgsI	TTSAA	2 cut(s)	269, 418
AluBI	AGCT	3 cut(s)	25, 249, 562
AluI	AGCT	3 cut(s)	25, 249, 562
Alw21I	GWGCWC	1 cut(s)	251
Alw26I	GTCTC	1 cut(s)	150
Ama87I	CYCGRG	2 cut(s)	153, 553
AoxI	GGCC	3 cut(s)	18, 421, 656
ApoI	RAATTY	1 cut(s)	613
ArsI	GACNNNNNNTTYG	2 cut(s)	191, 223
AspLEI	GCGC	1 cut(s)	524
AspS9I	GGNCC	2 cut(s)	421, 656
AvaI	CYCGRG	2 cut(s)	153, 553
BanI	GGYRCC	1 cut(s)	356
BanII	GRGCYC	1 cut(s)	251
BbsI	GAAGAC	1 cut(s)	73
Bbv12I	GWGCWC	1 cut(s)	251
BccI	CCATC	3 cut(s)	347, 383, 538
BciVI	GTATCC	1 cut(s)	445
BcoDI	GTCTC	1 cut(s)	150
BfuAI	ACCTGC	1 cut(s)	619
BfuI	GTATCC	1 cut(s)	445
BmeT110I	CYCGRG	2 cut(s)	153, 553
BmgT120I	GGNCC	2 cut(s)	421, 656
BmiI	GGNNCC	1 cut(s)	358
BmsI	GCATC	3 cut(s)	477, 509, 594
BpiI	GAAGAC	1 cut(s)	73
BplI	GAGNNNNNCTC	2 cut(s)	34, 66
BpuEI	CTTGAG	1 cut(s)	274
BsaBI	GATNNNNATC	1 cut(s)	101
BsaJI	CCNNGG	2 cut(s)	303, 375
Bsc4I	CCNNNNNNNGG	4 cut(s)	175, 304, 318, 497
Bse3DI	GCAATG	1 cut(s)	228
Bse8I	GATNNNNATC	1 cut(s)	101
BseDI	CCNNGG	2 cut(s)	303, 375
BseGI	GGATG	1 cut(s)	524
BseJI	GATNNNNATC	1 cut(s)	101
BseLI	CCNNNNNNNGG	4 cut(s)	175, 304, 318, 497
BseMI	GCAATG	1 cut(s)	228
BseMII	CTCAG	1 cut(s)	79
BsgI	GTGCAG	1 cut(s)	647
BshFI	GGCC	3 cut(s)	20, 423, 658
BshNI	GGYRCC	1 cut(s)	356
BsiHKAI	GWGCWC	1 cut(s)	251
BsiHKCI	CYCGRG	2 cut(s)	153, 553
BslI	CCNNNNNNNGG	4 cut(s)	175, 304, 318, 497
BsmAI	GTCTC	1 cut(s)	150
BsnI	GGCC	3 cut(s)	20, 423, 658
BsoBI	CYCGRG	2 cut(s)	153, 553
Bsp1286I	GDGCHC	1 cut(s)	251
Bsp1407I	TGTACA	1 cut(s)	327
BspANI	GGCC	3 cut(s)	20, 423, 658
BspCNI	CTCAG	1 cut(s)	78
BspHI	TCATGA	1 cut(s)	243
BspLI	GGNNCC	1 cut(s)	358
BspMI	ACCTGC	1 cut(s)	619
BspT107I	GGYRCC	1 cut(s)	356
BsrDI	GCAATG	1 cut(s)	228
BsrGI	TGTACA	1 cut(s)	327
BssECI	CCNNGG	2 cut(s)	303, 375
BssT1I	CCWWGG	1 cut(s)	375
Bst4CI	ACNGT	1 cut(s)	327
Bst6I	CTCTTC	2 cut(s)	35, 630
BstAUI	TGTACA	1 cut(s)	327
BstC8I	GCNNGC	1 cut(s)	609
BstDEI	CTNAG	2 cut(s)	65, 563
BstF5I	GGATG	1 cut(s)	524
BstHHI	GCGC	1 cut(s)	524
BstMAI	GTCTC	1 cut(s)	150
BstMWI	GCNNNNNNNGC	1 cut(s)	218
BstV2I	GAAGAC	1 cut(s)	73
BsuI	GTATCC	1 cut(s)	445
BsuRI	GGCC	3 cut(s)	20, 423, 658
BtsCI	GGATG	1 cut(s)	524
BtsI	GCAGTG	1 cut(s)	216
BtsIMutI	CAGTG	1 cut(s)	216
BveI	ACCTGC	1 cut(s)	619
Cac8I	GCNNGC	1 cut(s)	609
CciI	TCATGA	1 cut(s)	243
CfoI	GCGC	1 cut(s)	524
Cfr13I	GGNCC	2 cut(s)	421, 656
Csp6I	GTAC	2 cut(s)	328, 542
CviAII	CATG	3 cut(s)	113, 244, 484
CviJI	RGCY	9 cut(s)	20, 25, 249, 322, 393, 423, 529, 562, 658
CviKI_1	RGCY	9 cut(s)	20, 25, 249, 322, 393, 423, 529, 562, 658
CviQI	GTAC	2 cut(s)	328, 542
DdeI	CTNAG	2 cut(s)	65, 563
Eam1104I	CTCTTC	2 cut(s)	35, 630
EarI	CTCTTC	2 cut(s)	35, 630
Ecl136II	GAGCTC	1 cut(s)	249
Eco130I	CCWWGG	1 cut(s)	375
Eco24I	GRGCYC	1 cut(s)	251
Eco53kI	GAGCTC	1 cut(s)	249
Eco88I	CYCGRG	2 cut(s)	153, 553
EcoICRI	GAGCTC	1 cut(s)	249
EcoO109I	RGGNCCY	2 cut(s)	421, 656
EcoT14I	CCWWGG	1 cut(s)	375
EcoT38I	GRGCYC	1 cut(s)	251
ErhI	CCWWGG	1 cut(s)	375
FaeI	CATG	3 cut(s)	116, 247, 487
FatI	CATG	3 cut(s)	112, 243, 483
FauNDI	CATATG	1 cut(s)	370
FokI	GGATG	1 cut(s)	531
FriOI	GRGCYC	1 cut(s)	251
FspI	TGCGCA	1 cut(s)	523
GlaI	GCGC	1 cut(s)	523
HaeIII	GGCC	3 cut(s)	20, 423, 658
HhaI	GCGC	1 cut(s)	524
Hin1II	CATG	3 cut(s)	116, 247, 487
Hin6I	GCGC	1 cut(s)	522
HinP1I	GCGC	1 cut(s)	522
HincII	GTYRAC	1 cut(s)	477
HindII	GTYRAC	1 cut(s)	477
HinfI	GANTC	4 cut(s)	97, 158, 278, 592
HpaI	GTTAAC	1 cut(s)	477
Hpy166II	GTNNAC	1 cut(s)	477
Hpy188I	TCNGA	6 cut(s)	96, 170, 283, 304, 439, 597
Hpy188III	TCNNGA	6 cut(s)	244, 386, 415, 534, 555, 643
Hpy8I	GTNNAC	1 cut(s)	477
HpyAV	CCTTC	7 cut(s)	138, 142, 309, 312, 412, 640, 647
HpyCH4III	ACNGT	1 cut(s)	327
HpyCH4IV	ACGT	1 cut(s)	410
HpyCH4V	TGCA	4 cut(s)	116, 221, 607, 628
HpyF10VI	GCNNNNNNNGC	1 cut(s)	218
HpyF3I	CTNAG	2 cut(s)	65, 563
HpySE526I	ACGT	1 cut(s)	410
Hsp92II	CATG	3 cut(s)	116, 247, 487
HspAI	GCGC	1 cut(s)	522
KspAI	GTTAAC	1 cut(s)	477
LmnI	GCTCC	1 cut(s)	254
LpnPI	CCDG	3 cut(s)	153, 399, 614
LweI	GCATC	3 cut(s)	477, 509, 594
MaeII	ACGT	1 cut(s)	410
MaeIII	GTNAC	2 cut(s)	178, 257
MboII	GAAGA	5 cut(s)	52, 73, 281, 487, 647
MhlI	GDGCHC	1 cut(s)	251
MluCI	AATT	1 cut(s)	613
MlyI	GAGTC	1 cut(s)	152
MmeI	TCCRAC	2 cut(s)	462, 550
MnlI	CCTC	7 cut(s)	36, 133, 154, 201, 220, 298, 376
MseI	TTAA	1 cut(s)	476
MslI	CAYNNNNRTG	1 cut(s)	221
MwoI	GCNNNNNNNGC	1 cut(s)	218
NdeI	CATATG	1 cut(s)	370
NlaIII	CATG	3 cut(s)	116, 247, 487
NlaIV	GGNNCC	1 cut(s)	358
NmuCI	GTSAC	1 cut(s)	257
NsbI	TGCGCA	1 cut(s)	523
PagI	TCATGA	1 cut(s)	243
PcsI	WCGNNNNNNNCGW	1 cut(s)	639
PfeI	GAWTC	3 cut(s)	97, 278, 592
PleI	GAGTC	1 cut(s)	152
PpsI	GAGTC	1 cut(s)	152
Psp124BI	GAGCTC	1 cut(s)	251
PspN4I	GGNNCC	1 cut(s)	358
PspPI	GGNCC	2 cut(s)	421, 656
RsaI	GTAC	2 cut(s)	329, 543
RsaNI	GTAC	2 cut(s)	328, 542
RseI	CAYNNNNRTG	1 cut(s)	221
SacI	GAGCTC	1 cut(s)	251
SaqAI	TTAA	1 cut(s)	476
Sau96I	GGNCC	2 cut(s)	421, 656
SchI	GAGTC	1 cut(s)	152
SduI	GDGCHC	1 cut(s)	251
SetI	ASST	9 cut(s)	27, 47, 209, 251, 291, 368, 413, 564, 633
SfaNI	GCATC	3 cut(s)	477, 509, 594
SmiMI	CAYNNNNRTG	1 cut(s)	221
SmlI	CTYRAG	1 cut(s)	253
SmoI	CTYRAG	1 cut(s)	253
Sse9I	AATT	1 cut(s)	613
SstI	GAGCTC	1 cut(s)	251
StyI	CCWWGG	1 cut(s)	375
TaaI	ACNGT	1 cut(s)	327
TaiI	ACGT	1 cut(s)	413
TaqI	TCGA	3 cut(s)	161, 633, 642
TasI	AATT	1 cut(s)	613
TatI	WGTACW	1 cut(s)	327
TfiI	GAWTC	3 cut(s)	97, 278, 592
Tru1I	TTAA	1 cut(s)	476
Tru9I	TTAA	1 cut(s)	476
TscAI	CASTG	1 cut(s)	223
TseFI	GTSAC	1 cut(s)	257
Tsp45I	GTSAC	1 cut(s)	257
TspDTI	ATGAA	3 cut(s)	101, 232, 291
TspGWI	ACGGA	3 cut(s)	67, 330, 471
TspRI	CASTG	1 cut(s)	223
XapI	RAATTY	1 cut(s)	613
XcmI	CCANNNNNNNNNTGG	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.