pycom16g00200

Cell differentiation protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0003117
Physical Location & Seq
Reverse (-)
118669 .. 122506
3838 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 975 bp
ATGGCAAACCGGCCCCAGTCACTTTCATTAAATGTTCCATTCGGAGGTCCAAGCATTTCAGCACCAAGCATTGCTGGAGCTCAAGCAAACAAAGATCGATCTCTCACTGGTAAAATGGCATCAGCAGAGCGCTTGGTGCTTGACTTGAGTAATCCTGATCTTCGAGAAAACGCGCTTCTTGAACTTTCAAAGAACAAGGAATTATTTCAAGATTTGGCTCCTTTCGTGTGGAATTCTTTTGGTACTATTGCTGCACTCATCCAGGAGATAGTTTCAATATACCCTGTTCTATCACCACCAAATCTGACTCCGGCACAATCCAATCGAGTTTGCAATGCTCTTGCTCTTCTTCAGTGCGTAGCTTCCCACCCAGATACAAGGATGTTGTTCCTCAATGCTCATATACCTTTATATCTGTATCCTTTTCTCAATACATCAAGCAAGGCAAGACCATTTGAGTACTTAAGGCTTACGAGTTTAGGAGTCATTGGTGCCCTGGTGAAGGTTGATGATACTGAAGTTATTAGTTTCCTTCTGTCAACAGAAATAATTCCACTGTGCCTTCGCACTATGGAATTGGGCAGTGAACTCTCAAAAACAGTAGCCACATTTATAGTTCAGAAGATTTTGTTGGATGATATGGGCTTGGACTATATTTGTACTACAGCAGAACGGTTTTTTGCCGTAGGTCGAGTTTTGGGGACCATGGTTACAGCACTGGATGATCAACCCTCATCACGCCTTTTGAAACACATCATTCGTTGCTATCTTCGATTGTCAGATAATCCAAGGGCTTGTGATGCTTTAAGAAGTTGCCTTCCAGATGTGTTACGAGAGGCTAGCTTTAACAATTTCCTTTGTGAAGATCGATCATCTACTAGGAGGTGGCTGCAACAACTGCTGCAAAATGTTGGAGTGAGCCGGATTCCTGCACTGCAGGGTGGGGGAGGATTTGATCACGTGATGGTGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
Rcd1

Protein Analysis

325

Amino Acids

35.68

Weight (kDa)

6.89

Isoelectric Point (pI)

55.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rcd1 PF04078 45 - 304 2.8e-121 Cell differentiation family, Rcd1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 491
AccII CGCG 1 cut(s) 173
AcsI RAATTY 1 cut(s) 232
AcuI CTGAAG 2 cut(s) 335, 537
AcvI CACGTG 1 cut(s) 961
AfaI GTAC 3 cut(s) 244, 461, 661
AfeI AGCGCT 1 cut(s) 131
AfiI CCNNNNNNNGG 2 cut(s) 44, 502
AflII CTTAAG 1 cut(s) 463
AgsI TTSAA 5 cut(s) 182, 189, 209, 276, 748
AjnI CCWGG 2 cut(s) 261, 495
AjuI GAANNNNNNNTTGG 2 cut(s) 614, 646
AluBI AGCT 3 cut(s) 80, 362, 843
AluI AGCT 3 cut(s) 80, 362, 843
Alw21I GWGCWC 1 cut(s) 82
Aor51HI AGCGCT 1 cut(s) 131
AoxI GGCC 1 cut(s) 11
ApeKI GCWGC 3 cut(s) 251, 889, 901
ApoI RAATTY 1 cut(s) 232
Asp700I GAANNNNTTC 2 cut(s) 204, 549
AspLEI GCGC 2 cut(s) 132, 175
AspS9I GGNCC 3 cut(s) 12, 47, 702
AsuHPI GGTGA 2 cut(s) 285, 511
AsuNHI GCTAGC 1 cut(s) 839
AvaII GGWCC 2 cut(s) 47, 702
BaeGI GKGCMC 1 cut(s) 496
BaeI ACNNNNGTAYC 2 cut(s) 504, 537
BanI GGYRCC 1 cut(s) 491
BanII GRGCYC 1 cut(s) 82
BbrPI CACGTG 1 cut(s) 961
Bbv12I GWGCWC 1 cut(s) 82
BbvI GCAGC 3 cut(s) 238, 876, 888
BccI CCATC 1 cut(s) 958
BceAI ACGGC 1 cut(s) 668
BciT130I CCWGG 2 cut(s) 263, 497
BciVI GTATCC 1 cut(s) 429
BclI TGATCA 2 cut(s) 724, 955
BfaI CTAG 2 cut(s) 840, 879
BfmI CTRYAG 2 cut(s) 663, 935
BfoI RGCGCY 1 cut(s) 133
BfrI CTTAAG 1 cut(s) 463
BfuI GTATCC 1 cut(s) 429
BisI GCNGC 3 cut(s) 252, 890, 902
BlsI GCNGC 3 cut(s) 253, 891, 903
BmcAI AGTACT 1 cut(s) 461
Bme1390I CCNGG 2 cut(s) 263, 497
Bme18I GGWCC 2 cut(s) 47, 702
BmgT120I GGNCC 3 cut(s) 12, 47, 702
BmiI GGNNCC 4 cut(s) 14, 219, 493, 703
BmrFI CCNGG 2 cut(s) 263, 497
BmrI ACTGGG 1 cut(s) 10
BmsI GCATC 2 cut(s) 128, 790
BmtI GCTAGC 1 cut(s) 843
BmuI ACTGGG 1 cut(s) 10
BpmI CTGGAG 1 cut(s) 96
BpuEI CTTGAG 2 cut(s) 66, 166
Bsa29I ATCGAT 2 cut(s) 97, 868
BsaAI YACGTR 1 cut(s) 961
BsaJI CCNNGG 3 cut(s) 495, 705, 788
Bsc4I CCNNNNNNNGG 2 cut(s) 44, 502
Bse118I RCCGGY 1 cut(s) 9
Bse1I ACTGG 3 cut(s) 16, 112, 723
Bse3DI GCAATG 2 cut(s) 69, 340
BseBI CCWGG 2 cut(s) 263, 497
BseCI ATCGAT 2 cut(s) 97, 868
BseDI CCNNGG 3 cut(s) 495, 705, 788
BseGI GGATG 4 cut(s) 258, 387, 640, 727
BseLI CCNNNNNNNGG 2 cut(s) 44, 502
BseMI GCAATG 2 cut(s) 69, 340
BseNI ACTGG 3 cut(s) 16, 112, 723
BseSI GKGCMC 1 cut(s) 496
BseXI GCAGC 3 cut(s) 238, 876, 888
BsgI GTGCAG 2 cut(s) 237, 915
Bsh1236I CGCG 1 cut(s) 173
BshFI GGCC 1 cut(s) 13
BshNI GGYRCC 1 cut(s) 491
BshVI ATCGAT 2 cut(s) 97, 868
BsiHKAI GWGCWC 1 cut(s) 82
BsiSI CCGG 3 cut(s) 10, 311, 922
BslFI GGGAC 1 cut(s) 715
BslI CCNNNNNNNGG 2 cut(s) 44, 502
BsmFI GGGAC 1 cut(s) 715
BsnI GGCC 1 cut(s) 13
Bsp1286I GDGCHC 2 cut(s) 82, 496
Bsp143I GATC 7 cut(s) 94, 98, 157, 724, 865, 869, 955
Bsp19I CCATGG 1 cut(s) 705
BspANI GGCC 1 cut(s) 13
BspDI ATCGAT 2 cut(s) 97, 868
BspFNI CGCG 1 cut(s) 173
BspLI GGNNCC 4 cut(s) 14, 219, 493, 703
BspMAI CTGCAG 1 cut(s) 939
BspOI GCTAGC 1 cut(s) 843
BspQI GCTCTTC 1 cut(s) 351
BspT107I GGYRCC 1 cut(s) 491
BspTI CTTAAG 1 cut(s) 463
BsrDI GCAATG 2 cut(s) 69, 340
BsrFI RCCGGY 1 cut(s) 9
BsrI ACTGG 3 cut(s) 16, 112, 723
BssAI RCCGGY 1 cut(s) 9
BssECI CCNNGG 3 cut(s) 495, 705, 788
BssMI GATC 7 cut(s) 94, 98, 157, 724, 865, 869, 955
BssT1I CCWWGG 2 cut(s) 705, 788
Bst2UI CCWGG 2 cut(s) 263, 497
Bst4CI ACNGT 3 cut(s) 558, 601, 675
Bst6I CTCTTC 1 cut(s) 351
BstAFI CTTAAG 1 cut(s) 463
BstAPI GCANNNNNTGC 1 cut(s) 898
BstBAI YACGTR 1 cut(s) 961
BstC8I GCNNGC 1 cut(s) 841
BstDSI CCRYGG 1 cut(s) 705
BstENI CCTNNNNNAGG 1 cut(s) 500
BstF5I GGATG 4 cut(s) 258, 387, 640, 727
BstFNI CGCG 1 cut(s) 173
BstH2I RGCGCY 1 cut(s) 133
BstHHI GCGC 2 cut(s) 132, 175
BstKTI GATC 7 cut(s) 97, 101, 160, 727, 868, 872, 958
BstMBI GATC 7 cut(s) 94, 98, 157, 724, 865, 869, 955
BstMWI GCNNNNNNNGC 3 cut(s) 136, 800, 898
BstNI CCWGG 2 cut(s) 263, 497
BstSCI CCNGG 2 cut(s) 261, 495
BstSFI CTRYAG 2 cut(s) 663, 935
BstSLI GKGCMC 1 cut(s) 496
BstUI CGCG 1 cut(s) 173
BstV1I GCAGC 3 cut(s) 238, 876, 888
Bsu15I ATCGAT 2 cut(s) 97, 868
BsuI GTATCC 1 cut(s) 429
BsuRI GGCC 1 cut(s) 13
BsuTUI ATCGAT 2 cut(s) 97, 868
BtgI CCRYGG 1 cut(s) 705
BtsCI GGATG 4 cut(s) 258, 387, 640, 727
BtsI GCAGTG 2 cut(s) 589, 932
BtsIMutI CAGTG 6 cut(s) 105, 359, 554, 589, 716, 932
Cac8I GCNNGC 1 cut(s) 841
CfoI GCGC 2 cut(s) 132, 175
Cfr10I RCCGGY 1 cut(s) 9
Cfr13I GGNCC 3 cut(s) 12, 47, 702
ClaI ATCGAT 2 cut(s) 97, 868
Csp6I GTAC 3 cut(s) 243, 460, 660
CviAII CATG 1 cut(s) 706
CviQI GTAC 3 cut(s) 243, 460, 660
DpnI GATC 7 cut(s) 96, 100, 159, 726, 867, 871, 957
DpnII GATC 7 cut(s) 94, 98, 157, 724, 865, 869, 955
Eam1104I CTCTTC 1 cut(s) 351
EarI CTCTTC 1 cut(s) 351
Ecl136II GAGCTC 1 cut(s) 80
Eco130I CCWWGG 2 cut(s) 705, 788
Eco24I GRGCYC 1 cut(s) 82
Eco47I GGWCC 2 cut(s) 47, 702
Eco47III AGCGCT 1 cut(s) 131
Eco53kI GAGCTC 1 cut(s) 80
Eco57I CTGAAG 2 cut(s) 335, 537
Eco72I CACGTG 1 cut(s) 961
EcoICRI GAGCTC 1 cut(s) 80
EcoNI CCTNNNNNAGG 1 cut(s) 500
EcoRI GAATTC 1 cut(s) 232
EcoRII CCWGG 2 cut(s) 261, 495
EcoT14I CCWWGG 2 cut(s) 705, 788
EcoT38I GRGCYC 1 cut(s) 82
ErhI CCWWGG 2 cut(s) 705, 788
FaeI CATG 1 cut(s) 709
FaiI YATR 9 cut(s) 280, 402, 404, 412, 572, 614, 641, 654, 707
FaqI GGGAC 1 cut(s) 715
FatI CATG 1 cut(s) 705
FbaI TGATCA 2 cut(s) 724, 955
Fnu4HI GCNGC 3 cut(s) 252, 890, 902
FokI GGATG 4 cut(s) 245, 394, 647, 734
FriOI GRGCYC 1 cut(s) 82
Fsp4HI GCNGC 3 cut(s) 252, 890, 902
FspBI CTAG 2 cut(s) 840, 879
GlaI GCGC 2 cut(s) 131, 174
GluI GCNGC 3 cut(s) 252, 890, 902
GsuI CTGGAG 1 cut(s) 96
HaeII RGCGCY 1 cut(s) 133
HaeIII GGCC 1 cut(s) 13
HapII CCGG 3 cut(s) 10, 311, 922
HhaI GCGC 2 cut(s) 132, 175
Hin1II CATG 1 cut(s) 709
Hin6I GCGC 2 cut(s) 130, 173
HinP1I GCGC 2 cut(s) 130, 173
HincII GTYRAC 1 cut(s) 540
HindII GTYRAC 1 cut(s) 540
HinfI GANTC 3 cut(s) 307, 483, 925
HpaII CCGG 3 cut(s) 10, 311, 922
HphI GGTGA 2 cut(s) 285, 511
Hpy166II GTNNAC 2 cut(s) 540, 587
Hpy188I TCNGA 4 cut(s) 44, 306, 621, 781
Hpy188III TCNNGA 5 cut(s) 155, 164, 179, 209, 821
Hpy8I GTNNAC 2 cut(s) 540, 587
HpyAV CCTTC 4 cut(s) 496, 542, 572, 827
HpyCH4III ACNGT 3 cut(s) 558, 601, 675
HpyCH4IV ACGT 1 cut(s) 960
HpyCH4V TGCA 6 cut(s) 254, 333, 892, 904, 932, 937
HpyF10VI GCNNNNNNNGC 3 cut(s) 136, 800, 898
HpySE526I ACGT 1 cut(s) 960
Hsp92II CATG 1 cut(s) 709
HspAI GCGC 2 cut(s) 130, 173
Ksp22I TGATCA 2 cut(s) 724, 955
Kzo9I GATC 7 cut(s) 94, 98, 157, 724, 865, 869, 955
LguI GCTCTTC 1 cut(s) 351
LmnI GCTCC 2 cut(s) 77, 223
Lsp1109I GCAGC 3 cut(s) 238, 876, 888
LweI GCATC 2 cut(s) 128, 790
MaeI CTAG 2 cut(s) 840, 879
MaeII ACGT 1 cut(s) 960
MaeIII GTNAC 3 cut(s) 18, 709, 828
MalI GATC 7 cut(s) 96, 100, 159, 726, 867, 871, 957
MboI GATC 7 cut(s) 94, 98, 157, 724, 865, 869, 955
MboII GAAGA 6 cut(s) 152, 338, 341, 634, 761, 875
MhlI GDGCHC 2 cut(s) 82, 496
MluCI AATT 6 cut(s) 200, 232, 549, 575, 850, 970
MlyI GAGTC 2 cut(s) 301, 492
MmeI TCCRAC 2 cut(s) 612, 892
MnlI CCTC 6 cut(s) 38, 401, 742, 829, 876, 941
MroXI GAANNNNTTC 2 cut(s) 204, 549
MseI TTAA 4 cut(s) 29, 464, 806, 846
MspCI CTTAAG 1 cut(s) 463
MspI CCGG 3 cut(s) 10, 311, 922
MspR9I CCNGG 2 cut(s) 263, 497
MvaI CCWGG 2 cut(s) 263, 497
MvnI CGCG 1 cut(s) 173
MwoI GCNNNNNNNGC 3 cut(s) 136, 800, 898
NcoI CCATGG 1 cut(s) 705
NdeII GATC 7 cut(s) 94, 98, 157, 724, 865, 869, 955
NheI GCTAGC 1 cut(s) 839
NlaIII CATG 1 cut(s) 709
NlaIV GGNNCC 4 cut(s) 14, 219, 493, 703
NmuCI GTSAC 1 cut(s) 18
PciSI GCTCTTC 1 cut(s) 351
PdmI GAANNNNTTC 2 cut(s) 204, 549
PfeI GAWTC 1 cut(s) 925
PfoI TCCNGGA 1 cut(s) 261
PkrI GCNGC 3 cut(s) 253, 891, 903
PleI GAGTC 2 cut(s) 301, 491
PmaCI CACGTG 1 cut(s) 961
PmlI CACGTG 1 cut(s) 961
PpsI GAGTC 2 cut(s) 301, 491
Ppu21I YACGTR 1 cut(s) 961
Psp124BI GAGCTC 1 cut(s) 82
Psp6I CCWGG 2 cut(s) 261, 495
PspCI CACGTG 1 cut(s) 961
PspGI CCWGG 2 cut(s) 261, 495
PspN4I GGNNCC 4 cut(s) 14, 219, 493, 703
PspPI GGNCC 3 cut(s) 12, 47, 702
PstI CTGCAG 1 cut(s) 939
RsaI GTAC 3 cut(s) 244, 461, 661
RsaNI GTAC 3 cut(s) 243, 460, 660
SacI GAGCTC 1 cut(s) 82
SapI GCTCTTC 1 cut(s) 351
SaqAI TTAA 4 cut(s) 29, 464, 806, 846
SatI GCNGC 3 cut(s) 252, 890, 902
Sau3AI GATC 7 cut(s) 94, 98, 157, 724, 865, 869, 955
Sau96I GGNCC 3 cut(s) 12, 47, 702
ScaI AGTACT 1 cut(s) 461
SchI GAGTC 2 cut(s) 301, 492
ScrFI CCNGG 2 cut(s) 263, 497
SduI GDGCHC 2 cut(s) 82, 496
SetI ASST 9 cut(s) 49, 82, 364, 409, 507, 691, 845, 887, 963
SfaNI GCATC 2 cut(s) 128, 790
SfcI CTRYAG 2 cut(s) 663, 935
SinI GGWCC 2 cut(s) 47, 702
SmlI CTYRAG 3 cut(s) 81, 145, 463
SmoI CTYRAG 3 cut(s) 81, 145, 463
Sse9I AATT 6 cut(s) 200, 232, 549, 575, 850, 970
SspMI CTAG 2 cut(s) 840, 879
SstI GAGCTC 1 cut(s) 82
StyD4I CCNGG 2 cut(s) 261, 495
StyI CCWWGG 2 cut(s) 705, 788
TaaI ACNGT 3 cut(s) 558, 601, 675
TaiI ACGT 1 cut(s) 963
TaqI TCGA 6 cut(s) 97, 163, 325, 691, 772, 868
TasI AATT 6 cut(s) 200, 232, 549, 575, 850, 970
TatI WGTACW 2 cut(s) 459, 659
TfiI GAWTC 1 cut(s) 925
Tru1I TTAA 4 cut(s) 29, 464, 806, 846
Tru9I TTAA 4 cut(s) 29, 464, 806, 846
TscAI CASTG 6 cut(s) 112, 359, 561, 589, 723, 939
TseFI GTSAC 1 cut(s) 18
TseI GCWGC 3 cut(s) 251, 889, 901
Tsp45I GTSAC 1 cut(s) 18
TspDTI ATGAA 1 cut(s) 15
TspRI CASTG 6 cut(s) 112, 359, 561, 589, 723, 939
Vha464I CTTAAG 1 cut(s) 463
VpaK11BI GGWCC 2 cut(s) 47, 702
XagI CCTNNNNNAGG 1 cut(s) 500
XapI RAATTY 1 cut(s) 232
XmnI GAANNNNTTC 2 cut(s) 204, 549
XspI CTAG 2 cut(s) 840, 879
ZrmI AGTACT 1 cut(s) 461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.