pycom16g00830

Tetratricopeptide repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0007638
Physical Location & Seq
Reverse (-)
489182 .. 490210
1029 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1029 bp
ATGAACTCCTCCTCCACTCTCGCTTCCTCCTCCTTCTCTACATCCTCATCTCTCTTCCAATACAAACTCATTCCCAGTAAACCAACCCAACCTTCCCTTCTCCGTTTTGACCCTCCCCATTCCCACAATTCCCACAATGTCCCTGCCCTCAAAGTCACAGCCTCCTCCGCCGCCCACTACCACCGACCCCTCCTCCCAGGTAACACCCACAACAACCCAAGCCCGATTCTTCAAACTCTTAAACATTACGCCAAAACCGCCATTCTCATCGGAGTCACAGCCGCCGTGTTCACCACCAAGTCATCGACTTTGCTCGCCATAGCCGAACCTCCGCCGACATTGACCGAAGAAGCGCCGACCCAGGTCACAGATAACGAGAACAACCAATCCTCATCGCCATTGTCCGACTTCCTGGGTTCGAATTCGGAAGCCATCGGTGCCCTGAAATCGCTTCTGCAGCAGAAGCTCGAAAACGGCGAGGACGACGAGGCGCTCAAGATCCTGCAGCGCTTGGTCGAGGCGCAACCCTCCAATACCGAGTGGAAGTTCATGATGGCCAGGGTTCTCAGCGAAATGGGCGAAAACGAAAGCGCCCGCCAAGTGTTCGAGGAAATACTCGCCGCGAACCCCTTGTCCTTCGAGGCGTTGTTCGAGAACGCCCTGCTGATGGACCGCTGTGGCGAAGGCGAGGCCGTGATCAAGCGGTTGGAGGACGCATTGCAGGTTGCGGAGGAGGAGAACAAGGCCAAGGAGGCTCGGGACGTTAAATTGATAATGGCGCAGGTTCAGTTCTTGCAGAAGAACGTGGAGGGCGCATTGAATAGCTACAATGAATTGGTAAAGGAAGACCCAAAAGACTTCCGGCCGTACTTTTGCCGTGGGATGATTTACAGTTTGATCGATCGGAATGCAGAGGCGACGGAGCAGTTTGAGAGGTACCGGCAGCTTTCACCGAAGAAGTTCGAGGTGGATGGCTACTTGAGGAAGCCATTGTCGAGGGTCAAGCTATTCGGGAGCGACGAGAATTGA

Protein Analysis

343

Amino Acids

38.07

Weight (kDa)

5.43

Isoelectric Point (pI)

46.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_19 PF14559 156 - 211 3.6e-08 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 712, 772
Acc65I GGTACC 1 cut(s) 936
AccB1I GGYRCC 2 cut(s) 437, 936
AccII CGCG 1 cut(s) 623
AclWI GGATC 1 cut(s) 493
AcoI YGGCCR 2 cut(s) 555, 863
AcsI RAATTY 1 cut(s) 421
AfaI GTAC 2 cut(s) 869, 938
AfeI AGCGCT 1 cut(s) 509
AfiI CCNNNNNNNGG 1 cut(s) 667
AgsI TTSAA 2 cut(s) 233, 820
AjnI CCWGG 4 cut(s) 196, 360, 411, 557
AjuI GAANNNNNNNTTGG 4 cut(s) 76, 81, 108, 113
AloI GAACNNNNNNTCC 5 cut(s) 28, 371, 403, 617, 649
AluBI AGCT 4 cut(s) 466, 825, 946, 1006
AluI AGCT 4 cut(s) 466, 825, 946, 1006
AlwI GGATC 1 cut(s) 493
Ama87I CYCGRG 1 cut(s) 756
Aor51HI AGCGCT 1 cut(s) 509
AoxI GGCC 4 cut(s) 555, 690, 744, 863
ApeKI GCWGC 3 cut(s) 457, 505, 943
ApoI RAATTY 1 cut(s) 421
ArsI GACNNNNNNTTYG 2 cut(s) 617, 649
Asp700I GAANNNNTTC 1 cut(s) 959
Asp718I GGTACC 1 cut(s) 936
AspLEI GCGC 7 cut(s) 355, 493, 510, 523, 593, 781, 815
AspS9I GGNCC 1 cut(s) 670
AsuHPI GGTGA 2 cut(s) 283, 942
AsuII TTCGAA 1 cut(s) 419
AvaI CYCGRG 1 cut(s) 756
AvaII GGWCC 1 cut(s) 670
BaeGI GKGCMC 1 cut(s) 442
BalI TGGCCA 1 cut(s) 557
BanI GGYRCC 2 cut(s) 437, 936
BbsI GAAGAC 1 cut(s) 852
BbvI GCAGC 3 cut(s) 469, 517, 955
BccI CCATC 4 cut(s) 440, 547, 661, 965
BceAI ACGGC 5 cut(s) 269, 490, 677, 850, 861
BcgI CGANNNNNNTGC 2 cut(s) 890, 924
BciT130I CCWGG 4 cut(s) 198, 362, 413, 559
BclI TGATCA 1 cut(s) 696
BfmI CTRYAG 2 cut(s) 455, 503
BfoI RGCGCY 4 cut(s) 356, 494, 511, 594
BfuAI ACCTGC 2 cut(s) 712, 772
BglI GCCNNNNNGGC 1 cut(s) 752
BisI GCNGC 6 cut(s) 171, 282, 458, 506, 621, 944
BlsI GCNGC 6 cut(s) 172, 283, 459, 507, 622, 945
Bme1390I CCNGG 4 cut(s) 198, 362, 413, 559
Bme18I GGWCC 1 cut(s) 670
BmeT110I CYCGRG 1 cut(s) 756
BmgT120I GGNCC 1 cut(s) 670
BmiI GGNNCC 2 cut(s) 439, 938
BmrFI CCNGG 4 cut(s) 198, 362, 413, 559
BmrI ACTGGG 1 cut(s) 69
BmuI ACTGGG 1 cut(s) 69
BoxI GACNNNNGTC 1 cut(s) 362
BpiI GAAGAC 1 cut(s) 852
Bpu14I TTCGAA 1 cut(s) 419
BpuEI CTTGAG 2 cut(s) 479, 1000
Bsa29I ATCGAT 1 cut(s) 900
BsaJI CCNNGG 6 cut(s) 196, 360, 412, 558, 747, 877
BsaXI ACNNNNNCTCC 3 cut(s) 26, 177, 207
Bsc4I CCNNNNNNNGG 1 cut(s) 667
Bse118I RCCGGY 1 cut(s) 939
Bse1I ACTGG 1 cut(s) 75
Bse3DI GCAATG 1 cut(s) 716
BseBI CCWGG 4 cut(s) 198, 362, 413, 559
BseCI ATCGAT 1 cut(s) 900
BseDI CCNNGG 6 cut(s) 196, 360, 412, 558, 747, 877
BseGI GGATG 3 cut(s) 41, 888, 976
BseLI CCNNNNNNNGG 1 cut(s) 667
BseMI GCAATG 1 cut(s) 716
BseMII CTCAG 1 cut(s) 580
BseNI ACTGG 1 cut(s) 75
BseRI GAGGAG 5 cut(s) 19, 154, 182, 746, 749
BseSI GKGCMC 1 cut(s) 442
BseX3I CGGCCG 1 cut(s) 863
BseXI GCAGC 3 cut(s) 469, 517, 955
Bsh1236I CGCG 1 cut(s) 623
Bsh1285I CGRYCG 2 cut(s) 866, 904
BshFI GGCC 4 cut(s) 557, 692, 746, 865
BshNI GGYRCC 2 cut(s) 437, 936
BshVI ATCGAT 1 cut(s) 900
BsiEI CGRYCG 2 cut(s) 866, 904
BsiHKCI CYCGRG 1 cut(s) 756
BsiSI CCGG 2 cut(s) 862, 940
BslFI GGGAC 2 cut(s) 125, 773
BslI CCNNNNNNNGG 1 cut(s) 667
BsmFI GGGAC 2 cut(s) 125, 773
BsmI GAATGC 1 cut(s) 913
BsnI GGCC 4 cut(s) 557, 692, 746, 865
BsoBI CYCGRG 1 cut(s) 756
Bsp119I TTCGAA 1 cut(s) 419
Bsp1286I GDGCHC 1 cut(s) 442
Bsp143I GATC 4 cut(s) 498, 696, 897, 901
BspANI GGCC 4 cut(s) 557, 692, 746, 865
BspCNI CTCAG 1 cut(s) 579
BspDI ATCGAT 1 cut(s) 900
BspFNI CGCG 1 cut(s) 623
BspHI TCATGA 1 cut(s) 549
BspLI GGNNCC 2 cut(s) 439, 938
BspMAI CTGCAG 2 cut(s) 459, 507
BspMI ACCTGC 2 cut(s) 712, 772
BspPI GGATC 1 cut(s) 493
BspT104I TTCGAA 1 cut(s) 419
BspT107I GGYRCC 2 cut(s) 437, 936
BsrDI GCAATG 1 cut(s) 716
BsrFI RCCGGY 1 cut(s) 939
BsrI ACTGG 1 cut(s) 75
BssAI RCCGGY 1 cut(s) 939
BssECI CCNNGG 6 cut(s) 196, 360, 412, 558, 747, 877
BssMI GATC 4 cut(s) 498, 696, 897, 901
BssT1I CCWWGG 1 cut(s) 747
Bst2UI CCWGG 4 cut(s) 198, 362, 413, 559
Bst4CI ACNGT 1 cut(s) 893
Bst6I CTCTTC 1 cut(s) 59
BstBI TTCGAA 1 cut(s) 419
BstC8I GCNNGC 2 cut(s) 315, 595
BstDEI CTNAG 1 cut(s) 566
BstDSI CCRYGG 1 cut(s) 877
BstF5I GGATG 3 cut(s) 41, 888, 976
BstFNI CGCG 1 cut(s) 623
BstH2I RGCGCY 4 cut(s) 356, 494, 511, 594
BstHHI GCGC 7 cut(s) 355, 493, 510, 523, 593, 781, 815
BstKTI GATC 4 cut(s) 501, 699, 900, 904
BstMBI GATC 4 cut(s) 498, 696, 897, 901
BstMCI CGRYCG 2 cut(s) 866, 904
BstMWI GCNNNNNNNGC 7 cut(s) 167, 257, 437, 457, 463, 576, 752
BstNI CCWGG 4 cut(s) 198, 362, 413, 559
BstPAI GACNNNNGTC 1 cut(s) 362
BstSCI CCNGG 4 cut(s) 196, 360, 411, 557
BstSFI CTRYAG 2 cut(s) 455, 503
BstSLI GKGCMC 1 cut(s) 442
BstUI CGCG 1 cut(s) 623
BstV1I GCAGC 3 cut(s) 469, 517, 955
BstV2I GAAGAC 1 cut(s) 852
BstX2I RGATCY 1 cut(s) 498
BstYI RGATCY 1 cut(s) 498
BstZI CGGCCG 1 cut(s) 863
Bsu15I ATCGAT 1 cut(s) 900
BsuRI GGCC 4 cut(s) 557, 692, 746, 865
BsuTUI ATCGAT 1 cut(s) 900
BtgI CCRYGG 1 cut(s) 877
BtgZI GCGATG 1 cut(s) 378
BtsCI GGATG 3 cut(s) 41, 888, 976
BveI ACCTGC 2 cut(s) 712, 772
Cac8I GCNNGC 2 cut(s) 315, 595
CciI TCATGA 1 cut(s) 549
CfoI GCGC 7 cut(s) 355, 493, 510, 523, 593, 781, 815
Cfr10I RCCGGY 1 cut(s) 939
Cfr13I GGNCC 1 cut(s) 670
ClaI ATCGAT 1 cut(s) 900
CseI GACGC 1 cut(s) 722
Csp6I GTAC 2 cut(s) 868, 937
CviAII CATG 1 cut(s) 550
CviQI GTAC 2 cut(s) 868, 937
DdeI CTNAG 1 cut(s) 566
DpnI GATC 4 cut(s) 500, 698, 899, 903
DpnII GATC 4 cut(s) 498, 696, 897, 901
EaeI YGGCCR 2 cut(s) 555, 863
EagI CGGCCG 1 cut(s) 863
Eam1104I CTCTTC 1 cut(s) 59
EarI CTCTTC 1 cut(s) 59
EciI GGCGGA 2 cut(s) 157, 321
EclXI CGGCCG 1 cut(s) 863
Eco130I CCWWGG 1 cut(s) 747
Eco47I GGWCC 1 cut(s) 670
Eco47III AGCGCT 1 cut(s) 509
Eco52I CGGCCG 1 cut(s) 863
Eco88I CYCGRG 1 cut(s) 756
EcoRI GAATTC 1 cut(s) 421
EcoRII CCWGG 4 cut(s) 196, 360, 411, 557
EcoT14I CCWWGG 1 cut(s) 747
ErhI CCWWGG 1 cut(s) 747
FaeI CATG 1 cut(s) 553
FaiI YATR 2 cut(s) 320, 551
FaqI GGGAC 2 cut(s) 125, 773
FatI CATG 1 cut(s) 549
FauI CCCGC 1 cut(s) 602
FbaI TGATCA 1 cut(s) 696
Fnu4HI GCNGC 6 cut(s) 171, 282, 458, 506, 621, 944
FokI GGATG 3 cut(s) 28, 895, 983
Fsp4HI GCNGC 6 cut(s) 171, 282, 458, 506, 621, 944
GlaI GCGC 7 cut(s) 354, 492, 509, 522, 592, 780, 814
GluI GCNGC 6 cut(s) 171, 282, 458, 506, 621, 944
HaeII RGCGCY 4 cut(s) 356, 494, 511, 594
HaeIII GGCC 4 cut(s) 557, 692, 746, 865
HapII CCGG 2 cut(s) 862, 940
HgaI GACGC 1 cut(s) 722
HhaI GCGC 7 cut(s) 355, 493, 510, 523, 593, 781, 815
Hin1II CATG 1 cut(s) 553
Hin6I GCGC 7 cut(s) 353, 491, 508, 521, 591, 779, 813
HinP1I GCGC 7 cut(s) 353, 491, 508, 521, 591, 779, 813
HinfI GANTC 2 cut(s) 226, 273
HpaII CCGG 2 cut(s) 862, 940
HphI GGTGA 2 cut(s) 283, 942
Hpy166II GTNNAC 2 cut(s) 80, 291
Hpy188I TCNGA 4 cut(s) 272, 406, 427, 906
Hpy188III TCNNGA 5 cut(s) 496, 550, 652, 758, 1012
Hpy8I GTNNAC 2 cut(s) 80, 291
Hpy99I CGWCG 3 cut(s) 488, 922, 1022
HpyAV CCTTC 5 cut(s) 43, 102, 107, 646, 677
HpyCH4III ACNGT 1 cut(s) 893
HpyCH4IV ACGT 2 cut(s) 762, 804
HpyCH4V TGCA 5 cut(s) 457, 505, 721, 796, 911
HpyF10VI GCNNNNNNNGC 7 cut(s) 167, 257, 437, 457, 463, 576, 752
HpyF3I CTNAG 1 cut(s) 566
HpySE526I ACGT 2 cut(s) 762, 804
Hsp92II CATG 1 cut(s) 553
HspAI GCGC 7 cut(s) 353, 491, 508, 521, 591, 779, 813
KpnI GGTACC 1 cut(s) 940
Ksp22I TGATCA 1 cut(s) 696
Kzo9I GATC 4 cut(s) 498, 696, 897, 901
LmnI GCTCC 2 cut(s) 922, 1014
Lsp1109I GCAGC 3 cut(s) 469, 517, 955
MaeII ACGT 2 cut(s) 762, 804
MaeIII GTNAC 4 cut(s) 154, 200, 274, 364
MalI GATC 4 cut(s) 500, 698, 899, 903
MboI GATC 4 cut(s) 498, 696, 897, 901
MboII GAAGA 6 cut(s) 46, 221, 359, 811, 857, 967
MflI RGATCY 1 cut(s) 498
MhlI GDGCHC 1 cut(s) 442
MlsI TGGCCA 1 cut(s) 557
MluCI AATT 5 cut(s) 127, 421, 767, 833, 1024
MluNI TGGCCA 1 cut(s) 557
MlyI GAGTC 1 cut(s) 282
MmeI TCCRAC 2 cut(s) 429, 687
Mox20I TGGCCA 1 cut(s) 557
MroXI GAANNNNTTC 1 cut(s) 959
MscI TGGCCA 1 cut(s) 557
MseI TTAA 2 cut(s) 240, 765
Msp20I TGGCCA 1 cut(s) 557
MspA1I CMGCKG 1 cut(s) 675
MspI CCGG 2 cut(s) 862, 940
MspR9I CCNGG 4 cut(s) 198, 362, 413, 559
Mva1269I GAATGC 1 cut(s) 913
MvaI CCWGG 4 cut(s) 198, 362, 413, 559
MvnI CGCG 1 cut(s) 623
MwoI GCNNNNNNNGC 7 cut(s) 167, 257, 437, 457, 463, 576, 752
NdeII GATC 4 cut(s) 498, 696, 897, 901
NlaIII CATG 1 cut(s) 553
NlaIV GGNNCC 2 cut(s) 439, 938
NmuCI GTSAC 3 cut(s) 154, 274, 364
NspV TTCGAA 1 cut(s) 419
PagI TCATGA 1 cut(s) 549
PcsI WCGNNNNNNNCGW 4 cut(s) 321, 474, 480, 1017
PctI GAATGC 1 cut(s) 913
PdmI GAANNNNTTC 1 cut(s) 959
PfeI GAWTC 1 cut(s) 226
PkrI GCNGC 6 cut(s) 172, 283, 459, 507, 622, 945
Ple19I CGATCG 1 cut(s) 904
PleI GAGTC 1 cut(s) 281
PpsI GAGTC 1 cut(s) 281
PshAI GACNNNNGTC 1 cut(s) 362
Psp6I CCWGG 4 cut(s) 196, 360, 411, 557
PspGI CCWGG 4 cut(s) 196, 360, 411, 557
PspN4I GGNNCC 2 cut(s) 439, 938
PspPI GGNCC 1 cut(s) 670
PstI CTGCAG 2 cut(s) 459, 507
PsuI RGATCY 1 cut(s) 498
PvuI CGATCG 1 cut(s) 904
RsaI GTAC 2 cut(s) 869, 938
RsaNI GTAC 2 cut(s) 868, 937
SaqAI TTAA 2 cut(s) 240, 765
SatI GCNGC 6 cut(s) 171, 282, 458, 506, 621, 944
Sau3AI GATC 4 cut(s) 498, 696, 897, 901
Sau96I GGNCC 1 cut(s) 670
SchI GAGTC 1 cut(s) 282
ScrFI CCNGG 4 cut(s) 198, 362, 413, 559
SduI GDGCHC 1 cut(s) 442
SfcI CTRYAG 2 cut(s) 455, 503
SfuI TTCGAA 1 cut(s) 419
SinI GGWCC 1 cut(s) 670
SmlI CTYRAG 2 cut(s) 494, 979
SmoI CTYRAG 2 cut(s) 494, 979
Sse9I AATT 5 cut(s) 127, 421, 767, 833, 1024
StyD4I CCNGG 4 cut(s) 196, 360, 411, 557
StyI CCWWGG 1 cut(s) 747
TaaI ACNGT 1 cut(s) 893
TaiI ACGT 2 cut(s) 765, 807
TaqII GACCGA 1 cut(s) 359
TasI AATT 5 cut(s) 127, 421, 767, 833, 1024
TauI GCSGC 3 cut(s) 173, 284, 623
TfiI GAWTC 1 cut(s) 226
Tru1I TTAA 2 cut(s) 240, 765
Tru9I TTAA 2 cut(s) 240, 765
TseFI GTSAC 3 cut(s) 154, 274, 364
TseI GCWGC 3 cut(s) 457, 505, 943
Tsp45I GTSAC 3 cut(s) 154, 274, 364
TspDTI ATGAA 3 cut(s) 17, 538, 846
TspGWI ACGGA 2 cut(s) 92, 935
VpaK11BI GGWCC 1 cut(s) 670
XapI RAATTY 1 cut(s) 421
XmnI GAANNNNTTC 1 cut(s) 959
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.