Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0004601

Physical Location & Seq

Genomic Coordinates Forward (+)

2042650 .. 2043027

Gene Structure 378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGAACTAGAGCTTCACCTGCACTGCACCAAAATTTATACAGTAGGCAACATACATTGCTTCAACTTAAGCTTGAAGATGATGAGATCAATGTCTTACTATAACGTTGGAATATTGTGTCTTGTAGTTTTTCTTGTTGCGGTCAGTGAAACCCAGGTGGGTGAGGCAGCCGTGACTTGTAACCCAATGGAGCTAGCCCCATGCGCCGCCGCAATCATGTCCTCGAACTCTCCCACCGCCGTGTGTTGCGGCAAACTCAAGGAGCAGAGCCCTTGCCTCTGCCAGTATGTGAAGAACCCCAACCTCCAGAAGCTTGTCAACTCCCCAAACGCCAAGAAGGTCGCCGACACTTGTGGTTCCCCATTCCCCACATGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

126

Amino Acids

13.52

Weight (kDa)

8.0

Isoelectric Point (pI)

47.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004601)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73780
malus_domestica	MD06G1219800.v1.1 MD13G1035400.v1.1 MD14G1229500.v1.1 MD15G1204900.v1.1 MD16G1037400.v1.1
prunus_persica	Prupe.1G316400_v2.0.a1 Prupe.5G224300_v2.0.a1
pyrus_communis	pycom06g19630 pycom13g03110 pycom14g19090 pycom16g03260
rosa_chinensis	RchiOBHm_Chr7g0179461 RchiOBHm_Chr7g0179471
rosa_laevigata	RLG00000005353 RLG00000005354
rosa_multiflora	Rmu_sc0000735.1_g000021 Rmu_sc0000735.1_g000023
rosa_roxburghii	Rroxscaffold_3G00273980 Rroxscaffold_3G00273990
rosa_rugosa	Rorug06G0424700
rosa_samantha	Rh7AG024000 Rh7AG024300 Rh7BG023600 Rh7BG023700 Rh7CG025000 Rh7CG025100 Rh7DG024500 Rh7DG024600
rosa_wichuraiana	Rw7G001950 Rw7G001960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	27
Acc36I	ACCTGC	1 cut(s)	27
AciI	CCGC	5 cut(s)	140, 207, 210, 237, 249
AclI	AACGTT	1 cut(s)	105
AcsI	RAATTY	1 cut(s)	33
AflII	CTTAAG	1 cut(s)	67
AgsI	TTSAA	2 cut(s)	64, 76
AjnI	CCWGG	1 cut(s)	153
AleI	CACNNNNGTG	1 cut(s)	239
AluBI	AGCT	4 cut(s)	13, 72, 193, 313
AluI	AGCT	4 cut(s)	13, 72, 193, 313
ApeKI	GCWGC	1 cut(s)	167
ApoI	RAATTY	1 cut(s)	33
AspLEI	GCGC	1 cut(s)	206
AsuHPI	GGTGA	2 cut(s)	8, 173
AsuNHI	GCTAGC	1 cut(s)	193
BanII	GRGCYC	1 cut(s)	272
BbvI	GCAGC	1 cut(s)	179
BceAI	ACGGC	2 cut(s)	155, 224
BciT130I	CCWGG	1 cut(s)	155
BfaI	CTAG	2 cut(s)	8, 194
BfrI	CTTAAG	1 cut(s)	67
BfuAI	ACCTGC	1 cut(s)	27
BisI	GCNGC	4 cut(s)	168, 207, 210, 250
BlsI	GCNGC	4 cut(s)	169, 208, 211, 251
Bme1390I	CCNGG	1 cut(s)	155
BmiI	GGNNCC	1 cut(s)	358
BmrFI	CCNGG	1 cut(s)	155
BmtI	GCTAGC	1 cut(s)	197
BpmI	CTGGAG	1 cut(s)	290
BpuEI	CTTGAG	1 cut(s)	242
BsaJI	CCNNGG	1 cut(s)	153
Bse1I	ACTGG	1 cut(s)	283
Bse3DI	GCAATG	1 cut(s)	55
BseBI	CCWGG	1 cut(s)	155
BseDI	CCNNGG	1 cut(s)	153
BseMI	GCAATG	1 cut(s)	55
BseNI	ACTGG	1 cut(s)	283
BseXI	GCAGC	1 cut(s)	179
BsgI	GTGCAG	2 cut(s)	5, 10
Bsp1286I	GDGCHC	1 cut(s)	272
Bsp143I	GATC	1 cut(s)	86
BspACI	CCGC	5 cut(s)	140, 207, 210, 237, 249
BspLI	GGNNCC	1 cut(s)	358
BspMI	ACCTGC	1 cut(s)	27
BspOI	GCTAGC	1 cut(s)	197
BspTI	CTTAAG	1 cut(s)	67
BsrDI	GCAATG	1 cut(s)	55
BsrI	ACTGG	1 cut(s)	283
BssECI	CCNNGG	1 cut(s)	153
BssMI	GATC	1 cut(s)	86
Bst2UI	CCWGG	1 cut(s)	155
Bst4CI	ACNGT	1 cut(s)	43
BstAFI	CTTAAG	1 cut(s)	67
BstC8I	GCNNGC	1 cut(s)	195
BstHHI	GCGC	1 cut(s)	206
BstKTI	GATC	1 cut(s)	89
BstMBI	GATC	1 cut(s)	86
BstMWI	GCNNNNNNNGC	2 cut(s)	19, 203
BstNI	CCWGG	1 cut(s)	155
BstNSI	RCATGY	1 cut(s)	375
BstSCI	CCNGG	1 cut(s)	153
BstV1I	GCAGC	1 cut(s)	179
BtsI	GCAGTG	1 cut(s)	22
BtsIMutI	CAGTG	2 cut(s)	22, 151
BveI	ACCTGC	1 cut(s)	27
Cac8I	GCNNGC	1 cut(s)	195
CfoI	GCGC	1 cut(s)	206
CviAII	CATG	3 cut(s)	201, 217, 372
CviJI	RGCY	7 cut(s)	13, 72, 170, 193, 197, 270, 313
CviKI_1	RGCY	7 cut(s)	13, 72, 170, 193, 197, 270, 313
DpnI	GATC	1 cut(s)	88
DpnII	GATC	1 cut(s)	86
Eco24I	GRGCYC	1 cut(s)	272
EcoRII	CCWGG	1 cut(s)	153
EcoT38I	GRGCYC	1 cut(s)	272
FaeI	CATG	3 cut(s)	204, 220, 375
FaiI	YATR	7 cut(s)	39, 53, 102, 202, 218, 288, 373
FatI	CATG	3 cut(s)	200, 216, 371
Fnu4HI	GCNGC	4 cut(s)	168, 207, 210, 250
FriOI	GRGCYC	1 cut(s)	272
Fsp4HI	GCNGC	4 cut(s)	168, 207, 210, 250
FspBI	CTAG	2 cut(s)	8, 194
GlaI	GCGC	1 cut(s)	205
GluI	GCNGC	4 cut(s)	168, 207, 210, 250
GsuI	CTGGAG	1 cut(s)	290
HhaI	GCGC	1 cut(s)	206
Hin1II	CATG	3 cut(s)	204, 220, 375
Hin6I	GCGC	1 cut(s)	204
HinP1I	GCGC	1 cut(s)	204
HincII	GTYRAC	1 cut(s)	319
HindII	GTYRAC	1 cut(s)	319
HindIII	AAGCTT	2 cut(s)	70, 311
HphI	GGTGA	2 cut(s)	8, 173
Hpy166II	GTNNAC	1 cut(s)	319
Hpy188III	TCNNGA	1 cut(s)	307
Hpy8I	GTNNAC	1 cut(s)	319
HpyAV	CCTTC	1 cut(s)	331
HpyCH4III	ACNGT	1 cut(s)	43
HpyCH4IV	ACGT	1 cut(s)	105
HpyCH4V	TGCA	2 cut(s)	22, 27
HpyF10VI	GCNNNNNNNGC	2 cut(s)	19, 203
HpySE526I	ACGT	1 cut(s)	105
Hsp92II	CATG	3 cut(s)	204, 220, 375
HspAI	GCGC	1 cut(s)	204
Kzo9I	GATC	1 cut(s)	86
LmnI	GCTCC	2 cut(s)	190, 262
LpnPI	CCDG	5 cut(s)	32, 140, 167, 296, 320
Lsp1109I	GCAGC	1 cut(s)	179
MaeI	CTAG	2 cut(s)	8, 194
MaeII	ACGT	1 cut(s)	105
MaeIII	GTNAC	2 cut(s)	172, 179
MalI	GATC	1 cut(s)	88
MboI	GATC	1 cut(s)	86
MboII	GAAGA	2 cut(s)	88, 304
MhlI	GDGCHC	1 cut(s)	272
MluCI	AATT	1 cut(s)	33
MmeI	TCCRAC	1 cut(s)	88
MnlI	CCTC	4 cut(s)	157, 232, 287, 314
MseI	TTAA	1 cut(s)	68
MslI	CAYNNNNRTG	1 cut(s)	239
MspCI	CTTAAG	1 cut(s)	67
MspR9I	CCNGG	1 cut(s)	155
MvaI	CCWGG	1 cut(s)	155
MwoI	GCNNNNNNNGC	2 cut(s)	19, 203
NdeII	GATC	1 cut(s)	86
NheI	GCTAGC	1 cut(s)	193
NlaIII	CATG	3 cut(s)	204, 220, 375
NlaIV	GGNNCC	1 cut(s)	358
NmuCI	GTSAC	1 cut(s)	172
NspI	RCATGY	1 cut(s)	375
OliI	CACNNNNGTG	1 cut(s)	239
PaqCI	CACCTGC	1 cut(s)	27
PkrI	GCNGC	4 cut(s)	169, 208, 211, 251
Psp1406I	AACGTT	1 cut(s)	105
Psp6I	CCWGG	1 cut(s)	153
PspGI	CCWGG	1 cut(s)	153
PspN4I	GGNNCC	1 cut(s)	358
RseI	CAYNNNNRTG	1 cut(s)	239
SaqAI	TTAA	1 cut(s)	68
SatI	GCNGC	4 cut(s)	168, 207, 210, 250
Sau3AI	GATC	1 cut(s)	86
ScrFI	CCNGG	1 cut(s)	155
SduI	GDGCHC	1 cut(s)	272
SetI	ASST	9 cut(s)	15, 21, 74, 108, 159, 195, 306, 315, 342
SmiMI	CAYNNNNRTG	1 cut(s)	239
SmlI	CTYRAG	2 cut(s)	67, 257
SmoI	CTYRAG	2 cut(s)	67, 257
Sse9I	AATT	1 cut(s)	33
SsiI	CCGC	5 cut(s)	140, 207, 210, 237, 249
SspI	AATATT	1 cut(s)	114
SspMI	CTAG	2 cut(s)	8, 194
StyD4I	CCNGG	1 cut(s)	153
TaaI	ACNGT	1 cut(s)	43
TaiI	ACGT	1 cut(s)	108
TaqI	TCGA	1 cut(s)	224
TasI	AATT	1 cut(s)	33
TauI	GCSGC	3 cut(s)	209, 212, 252
Tru1I	TTAA	1 cut(s)	68
Tru9I	TTAA	1 cut(s)	68
TscAI	CASTG	2 cut(s)	29, 151
TseFI	GTSAC	1 cut(s)	172
TseI	GCWGC	1 cut(s)	167
Tsp45I	GTSAC	1 cut(s)	172
TspRI	CASTG	2 cut(s)	29, 151
Vha464I	CTTAAG	1 cut(s)	67
XapI	RAATTY	1 cut(s)	33
XceI	RCATGY	1 cut(s)	375
XspI	CTAG	2 cut(s)	8, 194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.