Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0003758

Physical Location & Seq

Genomic Coordinates Forward (+)

2276101 .. 2280409

Gene Structure 4309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGAATCACTGTGCGATTCAGCAAGGAAACGCCCTATCAGCTTGCGATGACATGAGGGCTTGTTCAAGAGACTCGGTCGTTTGTCCCAAACCTCGCCGTTTTGGCCTCCTTAGCGTCACTCACAACGATCCCGTCAGATCTCTCCGATGGCATCTCGGCCACCAAGCGGAGCTCTATGATTCGAAAGCAGGGTCTGATATTTTGGACATCCTCCTCCCAAAGGGATCTTTTGGTGTCGAACCATTTTCATGTACAGAAATAGCCTCGCCGCACCCATTTTTCTGCGGGTCACCGCCGAGCAGAAGTAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

104

Amino Acids

11.23

Weight (kDa)

6.94

Isoelectric Point (pI)

92.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003758)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68490
fragaria_vesca	FvH4_4g27320 FvH4_4g27321 FvH4_4g27321 FvH4_4g27321 FvH4_4g27321 FvH4_4g27321
malus_domestica	MD13G1041500.v1.1 MD13G1041600.v1.1 MD16G1042400.v1.1 MD16G1042500.v1.1
prunus_persica	Prupe.1G311600_v2.0.a1 Prupe.1G311700_v2.0.a1
pyrus_communis	pycom13g03600 pycom16g03660
rosa_chinensis	RchiOBHm_Chr4g0435121 RchiOBHm_Chr4g0435131
rosa_laevigata	RLG00000006617 RLG00000006618
rosa_multiflora	Rmu_sc0000400.1_g000004
rosa_roxburghii	Rroxscaffold_5G00376330 Rroxscaffold_5G00376340
rosa_rugosa	Rorug04G0282500 Rorug04G0282600
rosa_samantha	Rh4AG338000 Rh4AG338100 Rh4BG346100 Rh4BG346200 Rh4CG360600 Rh4CG360700 Rh4DG340500 Rh4DG340600
rosa_wichuraiana	Rw4G029470 Rw4G029480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	167, 269, 285, 293
AclWI	GGATC	2 cut(s)	122, 232
AcoI	YGGCCR	1 cut(s)	157
AfaI	GTAC	1 cut(s)	253
AfiI	CCNNNNNNNGG	2 cut(s)	166, 220
AgsI	TTSAA	1 cut(s)	66
AluBI	AGCT	3 cut(s)	41, 172, 309
AluI	AGCT	3 cut(s)	41, 172, 309
Alw21I	GWGCWC	1 cut(s)	174
Alw26I	GTCTC	1 cut(s)	63
AlwI	GGATC	2 cut(s)	122, 232
AlwNI	CAGNNNCTG	1 cut(s)	194
AoxI	GGCC	2 cut(s)	103, 157
ArsI	GACNNNNNNTTYG	2 cut(s)	176, 208
AsuHPI	GGTGA	1 cut(s)	282
AsuII	TTCGAA	1 cut(s)	182
BanII	GRGCYC	1 cut(s)	174
Bbv12I	GWGCWC	1 cut(s)	174
BccI	CCATC	1 cut(s)	141
BceAI	ACGGC	1 cut(s)	81
BcoDI	GTCTC	1 cut(s)	63
BglI	GCCNNNNNGGC	1 cut(s)	102
BglII	AGATCT	1 cut(s)	137
BisI	GCNGC	1 cut(s)	269
BlsI	GCNGC	1 cut(s)	270
BmsI	GCATC	1 cut(s)	160
Bpu10I	CCTNAGC	1 cut(s)	110
Bpu14I	TTCGAA	1 cut(s)	182
Bsc4I	CCNNNNNNNGG	2 cut(s)	166, 220
BseGI	GGATG	1 cut(s)	207
BseLI	CCNNNNNNNGG	2 cut(s)	166, 220
BseRI	GAGGAG	1 cut(s)	203
Bsh1285I	CGRYCG	1 cut(s)	78
BshFI	GGCC	2 cut(s)	105, 159
BsiEI	CGRYCG	1 cut(s)	78
BsiHKAI	GWGCWC	1 cut(s)	174
BslFI	GGGAC	1 cut(s)	69
BslI	CCNNNNNNNGG	2 cut(s)	166, 220
BsmAI	GTCTC	1 cut(s)	63
BsmFI	GGGAC	1 cut(s)	69
BsnI	GGCC	2 cut(s)	105, 159
Bsp119I	TTCGAA	1 cut(s)	182
Bsp1286I	GDGCHC	1 cut(s)	174
Bsp1407I	TGTACA	1 cut(s)	251
Bsp143I	GATC	3 cut(s)	127, 137, 224
BspACI	CCGC	4 cut(s)	167, 269, 285, 293
BspANI	GGCC	2 cut(s)	105, 159
BspPI	GGATC	2 cut(s)	122, 232
BspT104I	TTCGAA	1 cut(s)	182
BsrGI	TGTACA	1 cut(s)	251
BssMI	GATC	3 cut(s)	127, 137, 224
Bst4CI	ACNGT	1 cut(s)	11
BstAUI	TGTACA	1 cut(s)	251
BstBI	TTCGAA	1 cut(s)	182
BstC8I	GCNNGC	1 cut(s)	43
BstDEI	CTNAG	1 cut(s)	110
BstEII	GGTNACC	1 cut(s)	288
BstENI	CCTNNNNNAGG	1 cut(s)	218
BstF5I	GGATG	1 cut(s)	207
BstKTI	GATC	3 cut(s)	130, 140, 227
BstMAI	GTCTC	1 cut(s)	63
BstMBI	GATC	3 cut(s)	127, 137, 224
BstMCI	CGRYCG	1 cut(s)	78
BstMWI	GCNNNNNNNGC	4 cut(s)	38, 102, 111, 306
BstPI	GGTNACC	1 cut(s)	288
BstX2I	RGATCY	2 cut(s)	137, 224
BstYI	RGATCY	2 cut(s)	137, 224
BsuRI	GGCC	2 cut(s)	105, 159
BtgZI	GCGATG	1 cut(s)	60
BtsCI	GGATG	1 cut(s)	207
BtsIMutI	CAGTG	1 cut(s)	7
Cac8I	GCNNGC	1 cut(s)	43
CaiI	CAGNNNCTG	1 cut(s)	194
CseI	GACGC	1 cut(s)	103
Csp6I	GTAC	1 cut(s)	252
CviAII	CATG	2 cut(s)	52, 249
CviJI	RGCY	7 cut(s)	41, 59, 105, 159, 172, 263, 309
CviKI_1	RGCY	7 cut(s)	41, 59, 105, 159, 172, 263, 309
CviQI	GTAC	1 cut(s)	252
DdeI	CTNAG	1 cut(s)	110
DpnI	GATC	3 cut(s)	129, 139, 226
DpnII	GATC	3 cut(s)	127, 137, 224
EaeI	YGGCCR	1 cut(s)	157
Ecl136II	GAGCTC	1 cut(s)	172
Eco24I	GRGCYC	1 cut(s)	174
Eco53kI	GAGCTC	1 cut(s)	172
Eco91I	GGTNACC	1 cut(s)	288
EcoICRI	GAGCTC	1 cut(s)	172
EcoNI	CCTNNNNNAGG	1 cut(s)	218
EcoO65I	GGTNACC	1 cut(s)	288
EcoT38I	GRGCYC	1 cut(s)	174
FaeI	CATG	2 cut(s)	55, 252
FaiI	YATR	3 cut(s)	53, 177, 250
FaqI	GGGAC	1 cut(s)	69
FatI	CATG	2 cut(s)	51, 248
FauI	CCCGC	1 cut(s)	278
Fnu4HI	GCNGC	1 cut(s)	269
FokI	GGATG	1 cut(s)	194
FriOI	GRGCYC	1 cut(s)	174
Fsp4HI	GCNGC	1 cut(s)	269
GluI	GCNGC	1 cut(s)	269
HaeIII	GGCC	2 cut(s)	105, 159
HgaI	GACGC	1 cut(s)	103
Hin1II	CATG	2 cut(s)	55, 252
HinfI	GANTC	4 cut(s)	4, 16, 71, 179
HphI	GGTGA	1 cut(s)	282
Hpy188I	TCNGA	3 cut(s)	137, 146, 196
Hpy188III	TCNNGA	1 cut(s)	66
HpyCH4III	ACNGT	1 cut(s)	11
HpyF10VI	GCNNNNNNNGC	4 cut(s)	38, 102, 111, 306
HpyF3I	CTNAG	1 cut(s)	110
Hsp92II	CATG	2 cut(s)	55, 252
Kzo9I	GATC	3 cut(s)	127, 137, 224
LmnI	GCTCC	1 cut(s)	169
LpnPI	CCDG	1 cut(s)	174
LweI	GCATC	1 cut(s)	160
MaeIII	GTNAC	2 cut(s)	115, 288
MalI	GATC	3 cut(s)	129, 139, 226
MboI	GATC	3 cut(s)	127, 137, 224
MflI	RGATCY	2 cut(s)	137, 224
MhlI	GDGCHC	1 cut(s)	174
MlyI	GAGTC	1 cut(s)	65
MnlI	CCTC	6 cut(s)	48, 102, 116, 221, 224, 274
MslI	CAYNNNNRTG	1 cut(s)	247
MwoI	GCNNNNNNNGC	4 cut(s)	38, 102, 111, 306
NdeII	GATC	3 cut(s)	127, 137, 224
NlaIII	CATG	2 cut(s)	55, 252
NmeAIII	GCCGAG	1 cut(s)	135
NmuCI	GTSAC	2 cut(s)	115, 288
NspV	TTCGAA	1 cut(s)	182
PfeI	GAWTC	3 cut(s)	4, 16, 179
PflFI	GACNNNGTC	1 cut(s)	74
PkrI	GCNGC	1 cut(s)	270
PleI	GAGTC	1 cut(s)	65
PpsI	GAGTC	1 cut(s)	65
Psp124BI	GAGCTC	1 cut(s)	174
PspEI	GGTNACC	1 cut(s)	288
PstNI	CAGNNNCTG	1 cut(s)	194
PsuI	RGATCY	2 cut(s)	137, 224
PsyI	GACNNNGTC	1 cut(s)	74
RsaI	GTAC	1 cut(s)	253
RsaNI	GTAC	1 cut(s)	252
RseI	CAYNNNNRTG	1 cut(s)	247
SacI	GAGCTC	1 cut(s)	174
SatI	GCNGC	1 cut(s)	269
Sau3AI	GATC	3 cut(s)	127, 137, 224
SchI	GAGTC	1 cut(s)	65
SduI	GDGCHC	1 cut(s)	174
SetI	ASST	4 cut(s)	43, 94, 174, 311
SfaNI	GCATC	1 cut(s)	160
SfuI	TTCGAA	1 cut(s)	182
SmiMI	CAYNNNNRTG	1 cut(s)	247
SsiI	CCGC	4 cut(s)	167, 269, 285, 293
SstI	GAGCTC	1 cut(s)	174
TaaI	ACNGT	1 cut(s)	11
TaqI	TCGA	2 cut(s)	182, 237
TaqII	GACCGA	1 cut(s)	64
TatI	WGTACW	1 cut(s)	251
TauI	GCSGC	1 cut(s)	271
TfiI	GAWTC	3 cut(s)	4, 16, 179
TscAI	CASTG	1 cut(s)	14
TseFI	GTSAC	2 cut(s)	115, 288
Tsp45I	GTSAC	2 cut(s)	115, 288
TspDTI	ATGAA	2 cut(s)	17, 237
TspRI	CASTG	1 cut(s)	14
Tth111I	GACNNNGTC	1 cut(s)	74
XagI	CCTNNNNNAGG	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.