pycom16g03860

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0002504
Physical Location & Seq
Forward (+)
2414549 .. 2415569
1021 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 315 bp
ATGAAGTCTCGATCGCTTTCTCCCGGAACCAGTCTTGCCTCTGCTGAATCCTTGTCCATGCCTCTGTTGCAGGAAGTCGTTCTCTCAGCTGACATAAGTTGTAGCGATTGCCAAAAGAGACTTTCTGAGATGATGTCAAAAATGGGTGAGATAGAATCTGTTGTGGTGAATGTGTCGGAGAAGAGGGTGACGCTCGTATGCAGATATCCCGGTGCAGCCAAAGTTCCATCCACTCGGCTAGTCGCTGCAGTAAACAAAAACCCTCTGAAAAAAATTTCATTGATTCGAAGGATGCTTCGTACTTCCTCAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

105

Amino Acids

11.27

Weight (kDa)

9.95

Isoelectric Point (pI)

69.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 273
AfaI GTAC 1 cut(s) 301
AluBI AGCT 1 cut(s) 89
AluI AGCT 1 cut(s) 89
Alw26I GTCTC 2 cut(s) 12, 112
ApeKI GCWGC 2 cut(s) 215, 245
ApoI RAATTY 1 cut(s) 273
Asp700I GAANNNNTTC 1 cut(s) 78
AsuC2I CCSGG 2 cut(s) 24, 210
AsuHPI GGTGA 3 cut(s) 158, 178, 199
AsuII TTCGAA 1 cut(s) 286
BbvI GCAGC 2 cut(s) 227, 232
BccI CCATC 1 cut(s) 235
BcnI CCSGG 2 cut(s) 24, 210
BcoDI GTCTC 2 cut(s) 12, 112
BfaI CTAG 1 cut(s) 239
BfmI CTRYAG 1 cut(s) 246
BisI GCNGC 2 cut(s) 216, 246
BlsI GCNGC 2 cut(s) 217, 247
Bme1390I CCNGG 2 cut(s) 24, 210
BmiI GGNNCC 1 cut(s) 28
BmrFI CCNGG 2 cut(s) 24, 210
BmsI GCATC 1 cut(s) 282
Bpu14I TTCGAA 1 cut(s) 286
BpuEI CTTGAG 1 cut(s) 292
BpuMI CCSGG 2 cut(s) 24, 210
Bse1I ACTGG 1 cut(s) 30
BseGI GGATG 2 cut(s) 227, 297
BseMII CTCAG 2 cut(s) 99, 117
BseNI ACTGG 1 cut(s) 30
BseXI GCAGC 2 cut(s) 227, 232
BsgI GTGCAG 1 cut(s) 234
Bsh1285I CGRYCG 1 cut(s) 14
BsiEI CGRYCG 1 cut(s) 14
BsiSI CCGG 2 cut(s) 24, 210
BsmAI GTCTC 2 cut(s) 12, 112
Bsp119I TTCGAA 1 cut(s) 286
Bsp143I GATC 1 cut(s) 11
BspCNI CTCAG 2 cut(s) 98, 118
BspLI GGNNCC 1 cut(s) 28
BspMAI CTGCAG 1 cut(s) 250
BspT104I TTCGAA 1 cut(s) 286
BsrI ACTGG 1 cut(s) 30
BssMI GATC 1 cut(s) 11
Bst6I CTCTTC 1 cut(s) 176
BstBI TTCGAA 1 cut(s) 286
BstDEI CTNAG 2 cut(s) 85, 126
BstF5I GGATG 2 cut(s) 227, 297
BstKTI GATC 1 cut(s) 14
BstMAI GTCTC 2 cut(s) 12, 112
BstMBI GATC 1 cut(s) 11
BstMCI CGRYCG 1 cut(s) 14
BstMWI GCNNNNNNNGC 1 cut(s) 67
BstSCI CCNGG 2 cut(s) 22, 208
BstSFI CTRYAG 1 cut(s) 246
BstV1I GCAGC 2 cut(s) 227, 232
BtsCI GGATG 2 cut(s) 227, 297
CseI GACGC 1 cut(s) 199
Csp6I GTAC 1 cut(s) 300
CviAII CATG 1 cut(s) 58
CviJI RGCY 3 cut(s) 89, 218, 238
CviKI_1 RGCY 3 cut(s) 89, 218, 238
CviQI GTAC 1 cut(s) 300
DdeI CTNAG 2 cut(s) 85, 126
DpnI GATC 1 cut(s) 13
DpnII GATC 1 cut(s) 11
Eam1104I CTCTTC 1 cut(s) 176
EarI CTCTTC 1 cut(s) 176
Eco32I GATATC 1 cut(s) 206
EcoRV GATATC 1 cut(s) 206
FaeI CATG 1 cut(s) 61
FaiI YATR 3 cut(s) 59, 95, 199
FatI CATG 1 cut(s) 57
Fnu4HI GCNGC 2 cut(s) 216, 246
FokI GGATG 2 cut(s) 214, 304
Fsp4HI GCNGC 2 cut(s) 216, 246
FspBI CTAG 1 cut(s) 239
GluI GCNGC 2 cut(s) 216, 246
HapII CCGG 2 cut(s) 24, 210
HgaI GACGC 1 cut(s) 199
Hin1II CATG 1 cut(s) 61
HinfI GANTC 3 cut(s) 47, 155, 283
HpaII CCGG 2 cut(s) 24, 210
HphI GGTGA 3 cut(s) 158, 178, 199
Hpy166II GTNNAC 1 cut(s) 253
Hpy188I TCNGA 3 cut(s) 127, 178, 267
Hpy188III TCNNGA 1 cut(s) 9
Hpy8I GTNNAC 1 cut(s) 253
HpyAV CCTTC 1 cut(s) 282
HpyCH4V TGCA 4 cut(s) 70, 201, 215, 248
HpyF10VI GCNNNNNNNGC 1 cut(s) 67
HpyF3I CTNAG 2 cut(s) 85, 126
Hsp92II CATG 1 cut(s) 61
Kzo9I GATC 1 cut(s) 11
LpnPI CCDG 4 cut(s) 37, 43, 56, 223
Lsp1109I GCAGC 2 cut(s) 227, 232
LweI GCATC 1 cut(s) 282
MaeI CTAG 1 cut(s) 239
MaeIII GTNAC 1 cut(s) 187
MalI GATC 1 cut(s) 13
MboI GATC 1 cut(s) 11
MboII GAAGA 1 cut(s) 193
MluCI AATT 1 cut(s) 273
MmeI TCCRAC 1 cut(s) 156
MnlI CCTC 4 cut(s) 49, 72, 177, 273
MroXI GAANNNNTTC 1 cut(s) 78
MspA1I CMGCKG 1 cut(s) 89
MspI CCGG 2 cut(s) 24, 210
MspR9I CCNGG 2 cut(s) 24, 210
MwoI GCNNNNNNNGC 1 cut(s) 67
NciI CCSGG 2 cut(s) 24, 210
NdeII GATC 1 cut(s) 11
NlaIII CATG 1 cut(s) 61
NlaIV GGNNCC 1 cut(s) 28
NmeAIII GCCGAG 1 cut(s) 214
NmuCI GTSAC 1 cut(s) 187
NspV TTCGAA 1 cut(s) 286
PdmI GAANNNNTTC 1 cut(s) 78
PfeI GAWTC 3 cut(s) 47, 155, 283
PfoI TCCNGGA 1 cut(s) 22
PkrI GCNGC 2 cut(s) 217, 247
Ple19I CGATCG 1 cut(s) 14
PspN4I GGNNCC 1 cut(s) 28
PstI CTGCAG 1 cut(s) 250
PvuI CGATCG 1 cut(s) 14
PvuII CAGCTG 1 cut(s) 89
RsaI GTAC 1 cut(s) 301
RsaNI GTAC 1 cut(s) 300
SatI GCNGC 2 cut(s) 216, 246
Sau3AI GATC 1 cut(s) 11
ScrFI CCNGG 2 cut(s) 24, 210
SetI ASST 1 cut(s) 91
SfaNI GCATC 1 cut(s) 282
SfcI CTRYAG 1 cut(s) 246
SfuI TTCGAA 1 cut(s) 286
SmlI CTYRAG 1 cut(s) 307
SmoI CTYRAG 1 cut(s) 307
Sse9I AATT 1 cut(s) 273
SspMI CTAG 1 cut(s) 239
StyD4I CCNGG 2 cut(s) 22, 208
TaqI TCGA 2 cut(s) 10, 286
TasI AATT 1 cut(s) 273
TfiI GAWTC 3 cut(s) 47, 155, 283
TseFI GTSAC 1 cut(s) 187
TseI GCWGC 2 cut(s) 215, 245
Tsp45I GTSAC 1 cut(s) 187
TspDTI ATGAA 2 cut(s) 17, 267
XapI RAATTY 1 cut(s) 273
XmnI GAANNNNTTC 1 cut(s) 78
XspI CTAG 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.