Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0004612

Physical Location & Seq

Genomic Coordinates Reverse (-)

10287552 .. 10288016

Gene Structure 465 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGGAAGCTCAAGCTCAAGAACTCCATCACTCTTTGCCTGCATCTTCATCTGCGCAATCCTGGCCGCCTATTTGGTAGTGATTGCTTCAGCTTCGGCCGTTGATTTCAGCAGGGGCCACCAGCTGGGCGAGCTGAGCGGGGGTTCGACGAGATCGGCGGCGGGGGGACTGATAGCTGACGAGGACGAGGATGCGGAGATGCAGATGGACTCGGAGATCAACCGGCGTCTCTTAGCCACGAGGACGTACATTAGCTACGGTGCGCTGAATAGGAACACTGTCCCCTGCTCGCGACGTGGCGCGTCCTACTACAACTGCCGACCTGGGGTTCAGGCAAATCTCTATAGCCGAGGCGGTAGGACTCCGACTCGACATCGGTCTCCGGCGAATCCCTACCGTCTCGGCTGTAGCGCAGTTACTCGCTGCAGCGCTAATTTTTATTTTTATTTTTATAATTTAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005102 GO:0005179 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005911 GO:0007154 GO:0007165 GO:0007267 GO:0008150 GO:0009506 GO:0009966 GO:0009987 GO:0010469 GO:0010646 GO:0019722 GO:0019932 GO:0023051 GO:0023052 GO:0030054 GO:0030545 GO:0035556 GO:0048018 GO:0048046 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0065009 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RALF

Protein Analysis

155

Amino Acids

16.76

Weight (kDa)

9.19

Isoelectric Point (pI)

51.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RALF	PF05498	66 - 124	1.4e-21	Rapid ALkalinization Factor (RALF)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004612)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15800
fragaria_vesca	FvH4_4g18001 FvH4_6g06520
malus_domestica	MD03G1171400.v1.1 MD04G1201100.v1.1 MD12G1213600.v1.1 MD13G1168800.v1.1 MD16G1169200.v1.1
prunus_persica	Prupe.1G137000_v2.0.a1 Prupe.6G321200_v2.0.a1
pyrus_communis	pycom12g19950 pycom13g14440 pycom16g14230 pycom16g14250
rosa_chinensis	RchiOBHm_Chr3g0455671 RchiOBHm_Chr4g0422211
rosa_multiflora	Rmu_sc0002883.1_g000009 Rmu_sc0014362.1_g000002 Rmu_sc0026117.1_g000002
rosa_roxburghii	Rroxscaffold_5G00364330 Rroxscaffold_6G00423610 Rroxscaffold_6G00424110
rosa_rugosa	Rorug03G0009000 Rorug04G0178800
rosa_samantha	Rh3AG068700 Rh3BG071200 Rh3CG069500 Rh3DG071100 Rh4CG252800
rosa_wichuraiana	Rw3G005510 Rw4G020570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	453
Acc16I	TGCGCA	1 cut(s)	55
AccB7I	CCANNNNNTGG	1 cut(s)	124
AccBSI	CCGCTC	1 cut(s)	138
AccII	CGCG	2 cut(s)	292, 302
AciI	CCGC	6 cut(s)	66, 138, 158, 161, 194, 354
AcoI	YGGCCR	2 cut(s)	63, 96
AcuI	CTGAAG	1 cut(s)	72
AcyI	GRCGYC	1 cut(s)	226
AfaI	GTAC	1 cut(s)	248
AfeI	AGCGCT	1 cut(s)	430
AfiI	CCNNNNNNNGG	2 cut(s)	124, 325
AjiI	CACGTC	1 cut(s)	296
AjnI	CCWGG	2 cut(s)	60, 322
AluBI	AGCT	7 cut(s)	9, 15, 92, 124, 133, 176, 255
AluI	AGCT	7 cut(s)	9, 15, 92, 124, 133, 176, 255
Alw26I	GTCTC	3 cut(s)	233, 384, 404
Aor51HI	AGCGCT	1 cut(s)	430
AoxI	GGCC	3 cut(s)	63, 96, 115
ApeKI	GCWGC	2 cut(s)	423, 426
AspLEI	GCGC	5 cut(s)	56, 265, 302, 413, 431
AspS9I	GGNCC	1 cut(s)	115
BauI	CACGAG	1 cut(s)	238
BbvI	GCAGC	2 cut(s)	410, 438
BccI	CCATC	2 cut(s)	34, 199
BceAI	ACGGC	1 cut(s)	83
BciT130I	CCWGG	2 cut(s)	62, 324
BcoDI	GTCTC	3 cut(s)	233, 384, 404
BfmI	CTRYAG	3 cut(s)	343, 406, 424
BfoI	RGCGCY	1 cut(s)	432
BisI	GCNGC	4 cut(s)	66, 159, 424, 427
BlpI	GCTNAGC	1 cut(s)	134
BlsI	GCNGC	4 cut(s)	67, 160, 425, 428
Bme1390I	CCNGG	2 cut(s)	62, 324
BmgBI	CACGTC	1 cut(s)	296
BmgT120I	GGNCC	1 cut(s)	115
BmiI	GGNNCC	1 cut(s)	116
BmrFI	CCNGG	2 cut(s)	62, 324
BmsI	GCATC	3 cut(s)	51, 181, 189
BoxI	GACNNNNGTC	1 cut(s)	376
Bpu1102I	GCTNAGC	1 cut(s)	134
BsaHI	GRCGYC	1 cut(s)	226
BsaI	GGTCTC	1 cut(s)	384
BsaJI	CCNNGG	2 cut(s)	323, 349
Bsc4I	CCNNNNNNNGG	2 cut(s)	124, 325
Bse118I	RCCGGY	1 cut(s)	222
BseBI	CCWGG	2 cut(s)	62, 324
BseDI	CCNNGG	2 cut(s)	323, 349
BseGI	GGATG	1 cut(s)	196
BseLI	CCNNNNNNNGG	2 cut(s)	124, 325
BseMII	CTCAG	1 cut(s)	125
BseX3I	CGGCCG	1 cut(s)	96
BseXI	GCAGC	2 cut(s)	410, 438
BseYI	CCCAGC	1 cut(s)	124
Bsh1236I	CGCG	2 cut(s)	292, 302
Bsh1285I	CGRYCG	1 cut(s)	99
BshFI	GGCC	3 cut(s)	65, 98, 117
BsiEI	CGRYCG	1 cut(s)	99
BsiSI	CCGG	2 cut(s)	223, 383
BslFI	GGGAC	2 cut(s)	180, 266
BslI	CCNNNNNNNGG	2 cut(s)	124, 325
BsmAI	GTCTC	3 cut(s)	233, 384, 404
BsmBI	CGTCTC	2 cut(s)	233, 404
BsmFI	GGGAC	2 cut(s)	180, 266
BsnI	GGCC	3 cut(s)	65, 98, 117
Bso31I	GGTCTC	1 cut(s)	384
Bsp143I	GATC	2 cut(s)	152, 216
Bsp1720I	GCTNAGC	1 cut(s)	134
Bsp68I	TCGCGA	1 cut(s)	292
BspACI	CCGC	6 cut(s)	66, 138, 158, 161, 194, 354
BspANI	GGCC	3 cut(s)	65, 98, 117
BspCNI	CTCAG	1 cut(s)	126
BspFNI	CGCG	2 cut(s)	292, 302
BspLI	GGNNCC	1 cut(s)	116
BspMAI	CTGCAG	1 cut(s)	428
BspTNI	GGTCTC	1 cut(s)	384
BsrBI	CCGCTC	1 cut(s)	138
BsrFI	RCCGGY	1 cut(s)	222
BssAI	RCCGGY	1 cut(s)	222
BssECI	CCNNGG	2 cut(s)	323, 349
BssMI	GATC	2 cut(s)	152, 216
BssNI	GRCGYC	1 cut(s)	226
BssSI	CACGAG	1 cut(s)	238
Bst2BI	CACGAG	1 cut(s)	238
Bst2UI	CCWGG	2 cut(s)	62, 324
Bst4CI	ACNGT	3 cut(s)	260, 280, 398
BstACI	GRCGYC	1 cut(s)	226
BstC8I	GCNNGC	3 cut(s)	40, 131, 290
BstDEI	CTNAG	2 cut(s)	134, 232
BstF5I	GGATG	1 cut(s)	196
BstFNI	CGCG	2 cut(s)	292, 302
BstH2I	RGCGCY	1 cut(s)	432
BstHHI	GCGC	5 cut(s)	56, 265, 302, 413, 431
BstKTI	GATC	2 cut(s)	155, 219
BstMAI	GTCTC	3 cut(s)	233, 384, 404
BstMBI	GATC	2 cut(s)	152, 216
BstMCI	CGRYCG	1 cut(s)	99
BstMWI	GCNNNNNNNGC	3 cut(s)	62, 130, 135
BstNI	CCWGG	2 cut(s)	62, 324
BstPAI	GACNNNNGTC	1 cut(s)	376
BstSCI	CCNGG	2 cut(s)	60, 322
BstSFI	CTRYAG	3 cut(s)	343, 406, 424
BstUI	CGCG	2 cut(s)	292, 302
BstV1I	GCAGC	2 cut(s)	410, 438
BstZI	CGGCCG	1 cut(s)	96
BsuRI	GGCC	3 cut(s)	65, 98, 117
BtrI	CACGTC	1 cut(s)	296
BtsCI	GGATG	1 cut(s)	196
BtsIMutI	CAGTG	1 cut(s)	276
BtuMI	TCGCGA	1 cut(s)	292
Cac8I	GCNNGC	3 cut(s)	40, 131, 290
CfoI	GCGC	5 cut(s)	56, 265, 302, 413, 431
Cfr10I	RCCGGY	1 cut(s)	222
Cfr13I	GGNCC	1 cut(s)	115
CseI	GACGC	2 cut(s)	215, 291
Csp6I	GTAC	1 cut(s)	247
CviQI	GTAC	1 cut(s)	247
DdeI	CTNAG	2 cut(s)	134, 232
DpnI	GATC	2 cut(s)	154, 218
DpnII	GATC	2 cut(s)	152, 216
EaeI	YGGCCR	2 cut(s)	63, 96
EagI	CGGCCG	1 cut(s)	96
EclXI	CGGCCG	1 cut(s)	96
Eco31I	GGTCTC	1 cut(s)	384
Eco47III	AGCGCT	1 cut(s)	430
Eco52I	CGGCCG	1 cut(s)	96
Eco57I	CTGAAG	1 cut(s)	72
EcoRII	CCWGG	2 cut(s)	60, 322
Esp3I	CGTCTC	2 cut(s)	233, 404
FaiI	YATR	2 cut(s)	345, 453
FaqI	GGGAC	2 cut(s)	180, 266
FauI	CCCGC	2 cut(s)	131, 154
Fnu4HI	GCNGC	4 cut(s)	66, 159, 424, 427
FokI	GGATG	1 cut(s)	203
Fsp4HI	GCNGC	4 cut(s)	66, 159, 424, 427
FspI	TGCGCA	1 cut(s)	55
GlaI	GCGC	5 cut(s)	55, 264, 301, 412, 430
GluI	GCNGC	4 cut(s)	66, 159, 424, 427
GsaI	CCCAGC	1 cut(s)	128
HaeII	RGCGCY	1 cut(s)	432
HaeIII	GGCC	3 cut(s)	65, 98, 117
HapII	CCGG	2 cut(s)	223, 383
HgaI	GACGC	2 cut(s)	215, 291
HhaI	GCGC	5 cut(s)	56, 265, 302, 413, 431
Hin1I	GRCGYC	1 cut(s)	226
Hin6I	GCGC	5 cut(s)	54, 263, 300, 411, 429
HinP1I	GCGC	5 cut(s)	54, 263, 300, 411, 429
HinfI	GANTC	4 cut(s)	209, 361, 367, 388
HpaII	CCGG	2 cut(s)	223, 383
Hpy188I	TCNGA	2 cut(s)	214, 366
Hpy188III	TCNNGA	2 cut(s)	18, 291
Hpy99I	CGWCG	2 cut(s)	151, 297
HpyCH4III	ACNGT	3 cut(s)	260, 280, 398
HpyCH4IV	ACGT	2 cut(s)	245, 295
HpyCH4V	TGCA	3 cut(s)	42, 202, 426
HpyF10VI	GCNNNNNNNGC	3 cut(s)	62, 130, 135
HpyF3I	CTNAG	2 cut(s)	134, 232
HpySE526I	ACGT	2 cut(s)	245, 295
Hsp92I	GRCGYC	1 cut(s)	226
HspAI	GCGC	5 cut(s)	54, 263, 300, 411, 429
Kzo9I	GATC	2 cut(s)	152, 216
Lsp1109I	GCAGC	2 cut(s)	410, 438
LweI	GCATC	3 cut(s)	51, 181, 189
MaeII	ACGT	2 cut(s)	245, 295
MaeIII	GTNAC	1 cut(s)	415
MalI	GATC	2 cut(s)	154, 218
MbiI	CCGCTC	1 cut(s)	138
MboI	GATC	2 cut(s)	152, 216
MboII	GAAGA	1 cut(s)	37
MluCI	AATT	3 cut(s)	433, 454, 459
MlyI	GAGTC	3 cut(s)	203, 355, 361
MmeI	TCCRAC	1 cut(s)	389
MnlI	CCTC	4 cut(s)	175, 181, 234, 344
MseI	TTAA	2 cut(s)	458, 463
MspA1I	CMGCKG	1 cut(s)	124
MspI	CCGG	2 cut(s)	223, 383
MspR9I	CCNGG	2 cut(s)	62, 324
MvaI	CCWGG	2 cut(s)	62, 324
MvnI	CGCG	2 cut(s)	292, 302
MwoI	GCNNNNNNNGC	3 cut(s)	62, 130, 135
NdeII	GATC	2 cut(s)	152, 216
NlaIV	GGNNCC	1 cut(s)	116
NmeAIII	GCCGAG	2 cut(s)	374, 381
NruI	TCGCGA	1 cut(s)	292
NsbI	TGCGCA	1 cut(s)	55
PfeI	GAWTC	1 cut(s)	388
PflMI	CCANNNNNTGG	1 cut(s)	124
PkrI	GCNGC	4 cut(s)	67, 160, 425, 428
PleI	GAGTC	3 cut(s)	203, 355, 361
PpsI	GAGTC	3 cut(s)	203, 355, 361
PshAI	GACNNNNGTC	1 cut(s)	376
PsiI	TTATAA	1 cut(s)	453
Psp6I	CCWGG	2 cut(s)	60, 322
PspFI	CCCAGC	1 cut(s)	124
PspGI	CCWGG	2 cut(s)	60, 322
PspN4I	GGNNCC	1 cut(s)	116
PspPI	GGNCC	1 cut(s)	115
PstI	CTGCAG	1 cut(s)	428
PvuII	CAGCTG	1 cut(s)	124
RruI	TCGCGA	1 cut(s)	292
RsaI	GTAC	1 cut(s)	248
RsaNI	GTAC	1 cut(s)	247
SaqAI	TTAA	2 cut(s)	458, 463
SatI	GCNGC	4 cut(s)	66, 159, 424, 427
Sau3AI	GATC	2 cut(s)	152, 216
Sau96I	GGNCC	1 cut(s)	115
SchI	GAGTC	3 cut(s)	203, 355, 361
ScrFI	CCNGG	2 cut(s)	62, 324
SfaNI	GCATC	3 cut(s)	51, 181, 189
SfcI	CTRYAG	3 cut(s)	343, 406, 424
SmlI	CTYRAG	2 cut(s)	10, 16
SmoI	CTYRAG	2 cut(s)	10, 16
Sse9I	AATT	3 cut(s)	433, 454, 459
SsiI	CCGC	6 cut(s)	66, 138, 158, 161, 194, 354
StyD4I	CCNGG	2 cut(s)	60, 322
TaaI	ACNGT	3 cut(s)	260, 280, 398
TaiI	ACGT	2 cut(s)	248, 298
TaqI	TCGA	2 cut(s)	146, 370
TaqII	GACCGA	1 cut(s)	366
TasI	AATT	3 cut(s)	433, 454, 459
TauI	GCSGC	2 cut(s)	68, 161
TfiI	GAWTC	1 cut(s)	388
Tru1I	TTAA	2 cut(s)	458, 463
Tru9I	TTAA	2 cut(s)	458, 463
TscAI	CASTG	1 cut(s)	283
TseI	GCWGC	2 cut(s)	423, 426
TspDTI	ATGAA	1 cut(s)	37
TspRI	CASTG	1 cut(s)	283
Van91I	CCANNNNNTGG	1 cut(s)	124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.