Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0002021

Physical Location & Seq

Genomic Coordinates Forward (+)

11974101 .. 11977900

Gene Structure 3800 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1278 bp

ATGGGGTACCGTAAACGATCAAATGCTTCTTCTTCTTCTTCCTCTTCTTCCTCTCACTCTCAGCACACGGACGCTTCGATCTCAGGGATCCATGAGAAGCATCAAGAGGAACTAGATAACTTGACACTAACATCTCAACCCTTGAGAACATTGAAGTTTTTCATTTTGGCTGTATTTCAGTATGTTAAGTGTTCAATATCATATTTGTTGGCAAGAGGTGGTTGGCTTGTGTTTTTGAGTACTATGGTACTGTCTCTTGGGCTTCTTCTAATTACCATTGACGGTCCTCATGAAAAGCATCTTGAGGAACTCGTCAAATATTTTCAGTTCGGTTTATGGTGGGTGGCCCTTGGAGTTGCATCTTCAATTGGTCTTGGATCTGGTTTGCACACGTTTGTCCTATATCTGGGCCCTCATATAGCGTTCTTTACATTAAAGGCAATGCAGTGTGATCGGGTTGATCTAAAAAGTGCTCACTACGATACAATACAGCTAAAACAAGGCCCTTCGTGGCTTGGGAAGAACTGCTCTGACTTTGGACCCCCCTTGTTTACATCATTACATGGTTTGCGGGTTCCACTTAGCAGCATATTACCACAGGTCCAGTTAGAGGCTGTTTTATGGGGTCTTGGGACTGCAATTGGGGAGCTTCCTCCATATTTTATCTCAAGAGCAGCAAGCGTGTCTGGTAACGAAGTTGTCATGGAAGAATTGGATGCTCCCTCAGATGAAGGAACAGGATTCATAGCTACTCGTCTAAACCAAATCAAGCGCTGGCTTCTGTCACACTCTCAGCAGTTGAACTTCTTTACAATCCTAGTACTTGCTTCGGTGCCGAATCCTCTTTTTGACCTGGCTGGCATTATGTGTGGACAATTTGGTATTCCATTTTGGAAATTTTTCCTTGCAACAGTGATTGGAAAGGCAATTATTAAAACTCATCTACAGACAGTTTTCATCATCTCAGTTTGCAACAATCAACTTCTAAATTGGATAGAGAATGAATTGATTTGGGTTTTCAGTCTCATTCCTGGTTTTGCTGCTGTCCTTCCGAACCTCATTGCGAAAATCGATGCGGCAAAGGAAAAGTATCTCACAGCTTCTCCTTCGTCAAATATCAAGGTGAAAACGTGGGATTTCTCGTTTGCCTCAATTTGGAACAGTTTGGTGTGGCTTATGTTGTTGAACTTCTTTGTCAAGATTGTTACTGCAACCGCTCAGAGGTATCTGAAGAAACAGCAGGAAACGGAGCTTGCTTTGTTGTCAAAGAAGTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000407 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006810 GO:0006887 GO:0006996 GO:0007029 GO:0007030 GO:0008150 GO:0009987 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0031984 GO:0032940 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046903 GO:0051179 GO:0051234 GO:0071840 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko04140 map04140

Pfam Domains

Protein Families

SNARE_assoc

Protein Analysis

426

Amino Acids

47.3

Weight (kDa)

8.82

Isoelectric Point (pI)

34.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VTT_dom	PF09335	250 - 310	9.6e-07	VTT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05360 AT1G05360 AT4G14950 AT4G14950 AT4G14950
fragaria_vesca	FvH4_4g15240 FvH4_4g15240 FvH4_4g15240 FvH4_4g15240 FvH4_6g06030 FvH4_6g06030
malus_domestica	MD04G1204700.v1.1 MD12G1218400.v1.1 MD13G1190900.v1.1 MD16G1191100.v1.1
prunus_persica	Prupe.1G011300_v2.0.a1 Prupe.1G011300_v2.0.a1 Prupe.6G324700_v2.0.a1 Prupe.6G324700_v2.0.a1 Prupe.6G324700_v2.0.a1
pyrus_communis	pycom04g18090 pycom12g20400 pycom16g16070
rosa_chinensis	RchiOBHm_Chr3g0454991 RchiOBHm_Chr4g0400671 RchiOBHm_Chr4g0416611
rosa_laevigata	RLG00000007967 RLG00000025395
rosa_multiflora	Rmu_sc0001861.1_g000059 Rmu_sc0003722.1_g000053 Rmu_sc0028514.1_g000001
rosa_roxburghii	Rroxscaffold_5G00360490 Rroxscaffold_6G00424620
rosa_rugosa	Rorug03G0003800 Rorug04G0143300.1
rosa_samantha	Rh3AG063400 Rh3BG065100 Rh3CG064200 Rh3DG065400 Rh4AG205700 Rh4BG203200 Rh4CG216600 Rh4DG202700
rosa_wichuraiana	Rw3G004980 Rw4G017410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	6
AccB1I	GGYRCC	2 cut(s)	6, 832
AccBSI	CCGCTC	1 cut(s)	1217
AciI	CCGC	3 cut(s)	571, 1076, 1215
AclWI	GGATC	3 cut(s)	82, 95, 385
AcsI	RAATTY	1 cut(s)	896
AcuI	CTGAAG	1 cut(s)	1250
AfaI	GTAC	4 cut(s)	8, 241, 249, 822
AfeI	AGCGCT	1 cut(s)	773
AfiI	CCNNNNNNNGG	4 cut(s)	406, 610, 1155, 1221
AflIII	ACRYGT	1 cut(s)	390
AgsI	TTSAA	5 cut(s)	154, 195, 366, 802, 1186
AjnI	CCWGG	2 cut(s)	852, 1030
AluBI	AGCT	5 cut(s)	493, 649, 749, 1100, 1252
AluI	AGCT	5 cut(s)	493, 649, 749, 1100, 1252
Alw21I	GWGCWC	1 cut(s)	475
Alw26I	GTCTC	2 cut(s)	258, 1028
AlwI	GGATC	3 cut(s)	82, 95, 385
Aor51HI	AGCGCT	1 cut(s)	773
AoxI	GGCC	3 cut(s)	345, 409, 502
ApaI	GGGCCC	1 cut(s)	413
ApeKI	GCWGC	3 cut(s)	585, 674, 1040
ApoI	RAATTY	1 cut(s)	896
Asp700I	GAANNNNTTC	2 cut(s)	158, 899
Asp718I	GGTACC	1 cut(s)	6
AspLEI	GCGC	1 cut(s)	774
AspS9I	GGNCC	7 cut(s)	284, 346, 409, 410, 503, 539, 601
AsuHPI	GGTGA	1 cut(s)	1135
AvaII	GGWCC	3 cut(s)	284, 539, 601
BaeGI	GKGCMC	1 cut(s)	413
BamHI	GGATCC	1 cut(s)	87
BanI	GGYRCC	2 cut(s)	6, 832
BanII	GRGCYC	1 cut(s)	413
Bbv12I	GWGCWC	1 cut(s)	475
BbvI	GCAGC	3 cut(s)	597, 686, 1027
BcgI	CGANNNNNNTGC	2 cut(s)	434, 468
BciT130I	CCWGG	2 cut(s)	854, 1032
BcoDI	GTCTC	2 cut(s)	258, 1028
BfaI	CTAG	2 cut(s)	113, 818
BfmI	CTRYAG	1 cut(s)	944
BfoI	RGCGCY	1 cut(s)	775
BisI	GCNGC	4 cut(s)	586, 675, 1041, 1077
BlsI	GCNGC	4 cut(s)	587, 676, 1042, 1078
BmcAI	AGTACT	2 cut(s)	241, 822
Bme1390I	CCNGG	2 cut(s)	854, 1032
Bme18I	GGWCC	3 cut(s)	284, 539, 601
BmgT120I	GGNCC	7 cut(s)	284, 346, 409, 410, 503, 539, 601
BmiI	GGNNCC	6 cut(s)	8, 89, 411, 541, 576, 834
BmrFI	CCNGG	2 cut(s)	854, 1032
BmsI	GCATC	5 cut(s)	109, 307, 368, 706, 1063
BpuEI	CTTGAG	3 cut(s)	163, 323, 652
Bsa29I	ATCGAT	1 cut(s)	1071
BsaJI	CCNNGG	1 cut(s)	349
BsaXI	ACNNNNNCTCC	2 cut(s)	1087, 1117
Bsc4I	CCNNNNNNNGG	4 cut(s)	406, 610, 1155, 1221
Bse1I	ACTGG	1 cut(s)	604
Bse3DI	GCAATG	2 cut(s)	447, 1059
BseBI	CCWGG	2 cut(s)	854, 1032
BseCI	ATCGAT	1 cut(s)	1071
BseDI	CCNNGG	1 cut(s)	349
BseGI	GGATG	1 cut(s)	721
BseLI	CCNNNNNNNGG	4 cut(s)	406, 610, 1155, 1221
BseMI	GCAATG	2 cut(s)	447, 1059
BseMII	CTCAG	6 cut(s)	74, 96, 738, 806, 978, 1232
BseNI	ACTGG	1 cut(s)	604
BseSI	GKGCMC	1 cut(s)	413
BseXI	GCAGC	3 cut(s)	597, 686, 1027
BshFI	GGCC	3 cut(s)	347, 411, 504
BshNI	GGYRCC	2 cut(s)	6, 832
BshVI	ATCGAT	1 cut(s)	1071
BsiHKAI	GWGCWC	1 cut(s)	475
BslFI	GGGAC	1 cut(s)	646
BslI	CCNNNNNNNGG	4 cut(s)	406, 610, 1155, 1221
BsmAI	GTCTC	2 cut(s)	258, 1028
BsmFI	GGGAC	1 cut(s)	646
BsnI	GGCC	3 cut(s)	347, 411, 504
Bsp120I	GGGCCC	1 cut(s)	409
Bsp1286I	GDGCHC	2 cut(s)	413, 475
Bsp143I	GATC	6 cut(s)	17, 78, 87, 377, 451, 460
BspACI	CCGC	3 cut(s)	571, 1076, 1215
BspANI	GGCC	3 cut(s)	347, 411, 504
BspCNI	CTCAG	6 cut(s)	73, 95, 737, 805, 977, 1231
BspDI	ATCGAT	1 cut(s)	1071
BspHI	TCATGA	1 cut(s)	289
BspLI	GGNNCC	6 cut(s)	8, 89, 411, 541, 576, 834
BspPI	GGATC	3 cut(s)	82, 95, 385
BspT107I	GGYRCC	2 cut(s)	6, 832
BsrBI	CCGCTC	1 cut(s)	1217
BsrDI	GCAATG	2 cut(s)	447, 1059
BsrI	ACTGG	1 cut(s)	604
BssECI	CCNNGG	1 cut(s)	349
BssMI	GATC	6 cut(s)	17, 78, 87, 377, 451, 460
BssT1I	CCWWGG	1 cut(s)	349
Bst2UI	CCWGG	2 cut(s)	854, 1032
Bst4CI	ACNGT	6 cut(s)	11, 252, 284, 913, 952, 1163
Bst6I	CTCTTC	1 cut(s)	49
BstC8I	GCNNGC	4 cut(s)	679, 776, 859, 1254
BstDEI	CTNAG	7 cut(s)	60, 82, 581, 724, 792, 964, 1218
BstF5I	GGATG	1 cut(s)	721
BstH2I	RGCGCY	1 cut(s)	775
BstHHI	GCGC	1 cut(s)	774
BstKTI	GATC	6 cut(s)	20, 81, 90, 380, 454, 463
BstMAI	GTCTC	2 cut(s)	258, 1028
BstMBI	GATC	6 cut(s)	17, 78, 87, 377, 451, 460
BstNI	CCWGG	2 cut(s)	854, 1032
BstSCI	CCNGG	2 cut(s)	852, 1030
BstSFI	CTRYAG	1 cut(s)	944
BstSLI	GKGCMC	1 cut(s)	413
BstV1I	GCAGC	3 cut(s)	597, 686, 1027
BstX2I	RGATCY	2 cut(s)	87, 377
BstYI	RGATCY	2 cut(s)	87, 377
Bsu15I	ATCGAT	1 cut(s)	1071
BsuRI	GGCC	3 cut(s)	347, 411, 504
BsuTUI	ATCGAT	1 cut(s)	1071
BtsCI	GGATG	1 cut(s)	721
BtsI	GCAGTG	1 cut(s)	452
BtsIMutI	CAGTG	2 cut(s)	452, 918
Cac8I	GCNNGC	4 cut(s)	679, 776, 859, 1254
CciI	TCATGA	1 cut(s)	289
CfoI	GCGC	1 cut(s)	774
Cfr13I	GGNCC	7 cut(s)	284, 346, 409, 410, 503, 539, 601
ClaI	ATCGAT	1 cut(s)	1071
CseI	GACGC	1 cut(s)	80
Csp6I	GTAC	4 cut(s)	7, 240, 248, 821
CviAII	CATG	4 cut(s)	92, 290, 563, 703
CviQI	GTAC	4 cut(s)	7, 240, 248, 821
DdeI	CTNAG	7 cut(s)	60, 82, 581, 724, 792, 964, 1218
DpnI	GATC	6 cut(s)	19, 80, 89, 379, 453, 462
DpnII	GATC	6 cut(s)	17, 78, 87, 377, 451, 460
Eam1104I	CTCTTC	1 cut(s)	49
EarI	CTCTTC	1 cut(s)	49
Eco130I	CCWWGG	1 cut(s)	349
Eco24I	GRGCYC	1 cut(s)	413
Eco47I	GGWCC	3 cut(s)	284, 539, 601
Eco47III	AGCGCT	1 cut(s)	773
Eco57I	CTGAAG	1 cut(s)	1250
EcoO109I	RGGNCCY	2 cut(s)	410, 503
EcoRII	CCWGG	2 cut(s)	852, 1030
EcoT14I	CCWWGG	1 cut(s)	349
EcoT38I	GRGCYC	1 cut(s)	413
ErhI	CCWWGG	1 cut(s)	349
FaeI	CATG	4 cut(s)	95, 293, 566, 706
FaqI	GGGAC	1 cut(s)	646
FatI	CATG	4 cut(s)	91, 289, 562, 702
FauI	CCCGC	1 cut(s)	564
Fnu4HI	GCNGC	4 cut(s)	586, 675, 1041, 1077
FokI	GGATG	1 cut(s)	728
FriOI	GRGCYC	1 cut(s)	413
Fsp4HI	GCNGC	4 cut(s)	586, 675, 1041, 1077
FspBI	CTAG	2 cut(s)	113, 818
GlaI	GCGC	1 cut(s)	773
GluI	GCNGC	4 cut(s)	586, 675, 1041, 1077
HaeII	RGCGCY	1 cut(s)	775
HaeIII	GGCC	3 cut(s)	347, 411, 504
HgaI	GACGC	1 cut(s)	80
HhaI	GCGC	1 cut(s)	774
Hin1II	CATG	4 cut(s)	95, 293, 566, 706
Hin6I	GCGC	1 cut(s)	772
HinP1I	GCGC	1 cut(s)	772
HinfI	GANTC	2 cut(s)	741, 838
HphI	GGTGA	1 cut(s)	1135
Hpy166II	GTNNAC	3 cut(s)	14, 552, 872
Hpy188I	TCNGA	5 cut(s)	532, 727, 1053, 1221, 1230
Hpy188III	TCNNGA	5 cut(s)	104, 290, 302, 669, 1198
Hpy8I	GTNNAC	3 cut(s)	14, 552, 872
HpyAV	CCTTC	4 cut(s)	516, 725, 1058, 1116
HpyCH4III	ACNGT	6 cut(s)	11, 252, 284, 913, 952, 1163
HpyCH4IV	ACGT	2 cut(s)	392, 1130
HpyCH4V	TGCA	7 cut(s)	359, 388, 445, 638, 908, 972, 1211
HpyF3I	CTNAG	7 cut(s)	60, 82, 581, 724, 792, 964, 1218
HpySE526I	ACGT	2 cut(s)	392, 1130
Hsp92II	CATG	4 cut(s)	95, 293, 566, 706
HspAI	GCGC	1 cut(s)	772
KpnI	GGTACC	1 cut(s)	10
Kzo9I	GATC	6 cut(s)	17, 78, 87, 377, 451, 460
LmnI	GCTCC	3 cut(s)	646, 724, 1249
Lsp1109I	GCAGC	3 cut(s)	597, 686, 1027
LweI	GCATC	5 cut(s)	109, 307, 368, 706, 1063
MaeI	CTAG	2 cut(s)	113, 818
MaeII	ACGT	2 cut(s)	392, 1130
MaeIII	GTNAC	3 cut(s)	689, 783, 1204
MalI	GATC	6 cut(s)	19, 80, 89, 379, 453, 462
MbiI	CCGCTC	1 cut(s)	1217
MboI	GATC	6 cut(s)	17, 78, 87, 377, 451, 460
MfeI	CAATTG	2 cut(s)	366, 639
MflI	RGATCY	2 cut(s)	87, 377
MhlI	GDGCHC	2 cut(s)	413, 475
MroXI	GAANNNNTTC	2 cut(s)	158, 899
MseI	TTAA	3 cut(s)	186, 434, 933
MspR9I	CCNGG	2 cut(s)	854, 1032
MunI	CAATTG	2 cut(s)	366, 639
MvaI	CCWGG	2 cut(s)	854, 1032
NdeII	GATC	6 cut(s)	17, 78, 87, 377, 451, 460
NlaIII	CATG	4 cut(s)	95, 293, 566, 706
NlaIV	GGNNCC	6 cut(s)	8, 89, 411, 541, 576, 834
NmuCI	GTSAC	1 cut(s)	783
PagI	TCATGA	1 cut(s)	289
PcsI	WCGNNNNNNNCGW	1 cut(s)	74
PdmI	GAANNNNTTC	2 cut(s)	158, 899
PfeI	GAWTC	2 cut(s)	741, 838
PkrI	GCNGC	4 cut(s)	587, 676, 1042, 1078
Psp6I	CCWGG	2 cut(s)	852, 1030
PspGI	CCWGG	2 cut(s)	852, 1030
PspN4I	GGNNCC	6 cut(s)	8, 89, 411, 541, 576, 834
PspOMI	GGGCCC	1 cut(s)	409
PspPI	GGNCC	7 cut(s)	284, 346, 409, 410, 503, 539, 601
PsuI	RGATCY	2 cut(s)	87, 377
RsaI	GTAC	4 cut(s)	8, 241, 249, 822
RsaNI	GTAC	4 cut(s)	7, 240, 248, 821
SaqAI	TTAA	3 cut(s)	186, 434, 933
SatI	GCNGC	4 cut(s)	586, 675, 1041, 1077
Sau3AI	GATC	6 cut(s)	17, 78, 87, 377, 451, 460
Sau96I	GGNCC	7 cut(s)	284, 346, 409, 410, 503, 539, 601
ScaI	AGTACT	2 cut(s)	241, 822
ScrFI	CCNGG	2 cut(s)	854, 1032
SduI	GDGCHC	2 cut(s)	413, 475
SfaNI	GCATC	5 cut(s)	109, 307, 368, 706, 1063
SfcI	CTRYAG	1 cut(s)	944
SinI	GGWCC	3 cut(s)	284, 539, 601
SmlI	CTYRAG	3 cut(s)	142, 302, 667
SmoI	CTYRAG	3 cut(s)	142, 302, 667
SsiI	CCGC	3 cut(s)	571, 1076, 1215
SspI	AATATT	1 cut(s)	320
SspMI	CTAG	2 cut(s)	113, 818
StyD4I	CCNGG	2 cut(s)	852, 1030
StyI	CCWWGG	1 cut(s)	349
TaaI	ACNGT	6 cut(s)	11, 252, 284, 913, 952, 1163
TaiI	ACGT	2 cut(s)	395, 1133
TaqI	TCGA	2 cut(s)	77, 1071
TatI	WGTACW	2 cut(s)	239, 820
TauI	GCSGC	1 cut(s)	1079
TfiI	GAWTC	2 cut(s)	741, 838
Tru1I	TTAA	3 cut(s)	186, 434, 933
Tru9I	TTAA	3 cut(s)	186, 434, 933
TscAI	CASTG	2 cut(s)	452, 918
TseFI	GTSAC	1 cut(s)	783
TseI	GCWGC	3 cut(s)	585, 674, 1040
Tsp45I	GTSAC	1 cut(s)	783
TspDTI	ATGAA	6 cut(s)	151, 306, 733, 744, 946, 1017
TspGWI	ACGGA	2 cut(s)	83, 1262
TspRI	CASTG	2 cut(s)	452, 918
VpaK11BI	GGWCC	3 cut(s)	284, 539, 601
XapI	RAATTY	1 cut(s)	896
XmnI	GAANNNNTTC	2 cut(s)	158, 899
XspI	CTAG	2 cut(s)	113, 818
ZrmI	AGTACT	2 cut(s)	241, 822

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.