Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0002508

Physical Location & Seq

Genomic Coordinates Forward (+)

23274106 .. 23275551

Gene Structure 1446 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGATGCGGCATGGTCCATTGCCCGGGTCAGGGCCTACAACTGGCCACCAATCATTTGAGTCACTACCCCATCCTGAACTATTGGAAAATAAAATTGCATATCAAGCAGCAGAGATAAAACAACTGGCAGGAGACAATAATAGATTGGCAGCTTCTCATGTGGATTTAAGGCGGGATCTTGTAGCTGCAGAGGAGGATGTAGAAAGACTCAAGGCACACATGAGAAGCATCCAGACTGAGAGTGACATTCAGATCCGGGTTTTGCTTGATAAGATTGCAAAACGGGAAGCAGACATAAAGGCTGGTGAGGGTTTGAAGAAGGAATTGCAAAAGGCTCACATGGAAGCACAGAGCTTGTTTATAGCACGACAAGAGCTGACCATTAAAATTCAACAGGCCAAAGAGGAATTACAGAAAGCTCGACTGGATGTTCAGAAACTACCAGATTTGAATGCTGAACTTGACAGCTTGAGGCAAGAACACCAGAGGCTGCGTTCTACTTTTGAATATGAGAAGGGTTTAAACACAGAGCAAGTTGTGCAAATGAAAGCAATGGAGAAGAAGCTAATTGGGATGGCTAGAGAAGTAGAAAGGTTGCGTGACGAGGTCCTGAATTCCGAGAAGAGAGAACATGTTCTAGCGCCAAACACACATACTGGTGGTTACACAAATCCAGATTCGCATTTCCCACGTAATATCCAAGGTGGTAGTGCGAATTTTGATGGTTATGGGAGGCCTTATGTTTCTTTCGGTATTCGGCCACCAAGAGATGGAATAGTTCCATACGGCAGCGGCAGCAACGTAGCTGCTGGTGTAGGTATCCCAACTGCTGCTGGTGGTGCTATTTGGGGAGCAGCTTATGATTCCTCGCTTGATGCAGCTGCCCCTAGCTCTGGGGTTGGTGCTGTTTGGAGAGGTGCTTATGATTCTGCGCTTTCTCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

315

Amino Acids

34.49

Weight (kDa)

6.39

Isoelectric Point (pI)

38.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002508)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61920 AT5G61920 AT5G61920 AT5G61920 AT5G61920 AT5G61920
fragaria_vesca	FvH4_4g10270 FvH4_4g10270 FvH4_4g10270
malus_domestica	MD16G1260800.v1.1
prunus_persica	Prupe.1G098700_v2.0.a1 Prupe.1G098700_v2.0.a1 Prupe.1G098700_v2.0.a1 Prupe.1G098700_v2.0.a1 Prupe.1G098700_v2.0.a1 Prupe.8G181400_v2.0.a1 Prupe.8G181400_v2.0.a1 Prupe.8G181400_v2.0.a1
pyrus_communis	pycom13g28830 pycom16g22880
rosa_chinensis	RchiOBHm_Chr4g0405071
rosa_laevigata	RLG00000008879
rosa_multiflora	Rmu_co8518171.1_g000001 Rmu_sc0001744.1_g000025
rosa_roxburghii	Rroxscaffold_5G00349240
rosa_rugosa	Rorug04G0052600 Rorug04G0052700 Rorug04G0052800 Rorug04G0052900 Rorug04G0052900 Rorug04G0053000 Rorug04G0053000 Rorug04G0053100 Rorug04G0053200 Rorug04G0053300 Rorug04G0053400
rosa_samantha	Rh4AG127800 Rh4BG121500 Rh4CG135500 Rh4DG121900
rosa_wichuraiana	Rw4G010350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	770
AciI	CCGC	3 cut(s)	7, 172, 792
AclWI	GGATC	2 cut(s)	183, 247
AcoI	YGGCCR	2 cut(s)	43, 758
AcsI	RAATTY	3 cut(s)	387, 613, 715
AfiI	CCNNNNNNNGG	6 cut(s)	23, 29, 30, 41, 770, 893
AflIII	ACRYGT	1 cut(s)	631
AgsI	TTSAA	4 cut(s)	316, 392, 451, 506
Alw26I	GTCTC	1 cut(s)	126
AlwI	GGATC	2 cut(s)	183, 247
AlwNI	CAGNNNCTG	1 cut(s)	490
Ama87I	CYCGRG	1 cut(s)	23
AoxI	GGCC	5 cut(s)	32, 43, 396, 734, 758
ApoI	RAATTY	3 cut(s)	387, 613, 715
Asp700I	GAANNNNTTC	1 cut(s)	633
AspLEI	GCGC	2 cut(s)	643, 934
AspS9I	GGNCC	3 cut(s)	14, 32, 607
AsuC2I	CCSGG	3 cut(s)	24, 25, 257
AsuHPI	GGTGA	1 cut(s)	317
AvaI	CYCGRG	1 cut(s)	23
AvaII	GGWCC	2 cut(s)	14, 607
BalI	TGGCCA	1 cut(s)	45
BccI	CCATC	4 cut(s)	78, 568, 716, 764
BceAI	ACGGC	1 cut(s)	802
BciVI	GTATCC	1 cut(s)	830
BcnI	CCSGG	3 cut(s)	24, 25, 257
BcoDI	GTCTC	1 cut(s)	126
BfaI	CTAG	3 cut(s)	579, 638, 888
BfmI	CTRYAG	1 cut(s)	186
BfoI	RGCGCY	1 cut(s)	644
BfuI	GTATCC	1 cut(s)	830
Bme1390I	CCNGG	3 cut(s)	24, 25, 257
Bme18I	GGWCC	2 cut(s)	14, 607
BmeT110I	CYCGRG	1 cut(s)	23
BmgT120I	GGNCC	3 cut(s)	14, 32, 607
BmrFI	CCNGG	3 cut(s)	24, 25, 257
BmsI	GCATC	2 cut(s)	237, 865
BpuEI	CTTGAG	2 cut(s)	194, 490
BpuMI	CCSGG	3 cut(s)	24, 25, 257
BsaAI	YACGTR	1 cut(s)	692
BsaJI	CCNNGG	2 cut(s)	23, 700
Bsc4I	CCNNNNNNNGG	6 cut(s)	23, 29, 30, 41, 770, 893
Bse1I	ACTGG	4 cut(s)	46, 129, 429, 661
Bse3DI	GCAATG	2 cut(s)	17, 558
BseDI	CCNNGG	2 cut(s)	23, 700
BseGI	GGATG	5 cut(s)	70, 202, 228, 433, 579
BseLI	CCNNNNNNNGG	6 cut(s)	23, 29, 30, 41, 770, 893
BseMI	GCAATG	2 cut(s)	17, 558
BseMII	CTCAG	1 cut(s)	228
BseNI	ACTGG	4 cut(s)	46, 129, 429, 661
BseRI	GAGGAG	1 cut(s)	206
BshFI	GGCC	5 cut(s)	34, 45, 398, 736, 760
BsiHKCI	CYCGRG	1 cut(s)	23
BsiSI	CCGG	2 cut(s)	24, 256
BslI	CCNNNNNNNGG	6 cut(s)	23, 29, 30, 41, 770, 893
BsmAI	GTCTC	1 cut(s)	126
BsmI	GAATGC	1 cut(s)	457
BsnI	GGCC	5 cut(s)	34, 45, 398, 736, 760
BsoBI	CYCGRG	1 cut(s)	23
Bsp143I	GATC	2 cut(s)	175, 252
BspACI	CCGC	3 cut(s)	7, 172, 792
BspANI	GGCC	5 cut(s)	34, 45, 398, 736, 760
BspCNI	CTCAG	1 cut(s)	229
BspMAI	CTGCAG	1 cut(s)	190
BspPI	GGATC	2 cut(s)	183, 247
BsrDI	GCAATG	2 cut(s)	17, 558
BsrI	ACTGG	4 cut(s)	46, 129, 429, 661
BssECI	CCNNGG	2 cut(s)	23, 700
BssMI	GATC	2 cut(s)	175, 252
BssT1I	CCWWGG	1 cut(s)	700
Bst6I	CTCTTC	1 cut(s)	617
BstAPI	GCANNNNNTGC	1 cut(s)	538
BstBAI	YACGTR	1 cut(s)	692
BstDEI	CTNAG	1 cut(s)	237
BstF5I	GGATG	5 cut(s)	70, 202, 228, 433, 579
BstH2I	RGCGCY	1 cut(s)	644
BstHHI	GCGC	2 cut(s)	643, 934
BstKTI	GATC	2 cut(s)	178, 255
BstMAI	GTCTC	1 cut(s)	126
BstMBI	GATC	2 cut(s)	175, 252
BstMWI	GCNNNNNNNGC	4 cut(s)	104, 538, 795, 839
BstNSI	RCATGY	1 cut(s)	635
BstSCI	CCNGG	3 cut(s)	22, 23, 255
BstSFI	CTRYAG	1 cut(s)	186
BstX2I	RGATCY	2 cut(s)	175, 252
BstYI	RGATCY	2 cut(s)	175, 252
BsuI	GTATCC	1 cut(s)	830
BsuRI	GGCC	5 cut(s)	34, 45, 398, 736, 760
BtsCI	GGATG	5 cut(s)	70, 202, 228, 433, 579
CaiI	CAGNNNCTG	1 cut(s)	490
CfoI	GCGC	2 cut(s)	643, 934
Cfr13I	GGNCC	3 cut(s)	14, 32, 607
Cfr9I	CCCGGG	1 cut(s)	23
CviAII	CATG	5 cut(s)	11, 158, 220, 340, 632
DdeI	CTNAG	1 cut(s)	237
DpnI	GATC	2 cut(s)	177, 254
DpnII	GATC	2 cut(s)	175, 252
DraI	TTTAAA	1 cut(s)	522
EaeI	YGGCCR	2 cut(s)	43, 758
Eam1104I	CTCTTC	1 cut(s)	617
EarI	CTCTTC	1 cut(s)	617
Eco130I	CCWWGG	1 cut(s)	700
Eco147I	AGGCCT	1 cut(s)	736
Eco47I	GGWCC	2 cut(s)	14, 607
Eco88I	CYCGRG	1 cut(s)	23
EcoO109I	RGGNCCY	2 cut(s)	32, 607
EcoRI	GAATTC	1 cut(s)	613
EcoT14I	CCWWGG	1 cut(s)	700
ErhI	CCWWGG	1 cut(s)	700
FaeI	CATG	5 cut(s)	14, 161, 223, 343, 635
FatI	CATG	5 cut(s)	10, 157, 219, 339, 631
FauI	CCCGC	1 cut(s)	165
FokI	GGATG	5 cut(s)	57, 209, 215, 440, 586
FspBI	CTAG	3 cut(s)	579, 638, 888
GlaI	GCGC	2 cut(s)	642, 933
HaeII	RGCGCY	1 cut(s)	644
HaeIII	GGCC	5 cut(s)	34, 45, 398, 736, 760
HapII	CCGG	2 cut(s)	24, 256
HhaI	GCGC	2 cut(s)	643, 934
Hin1II	CATG	5 cut(s)	14, 161, 223, 343, 635
Hin6I	GCGC	2 cut(s)	641, 932
HinP1I	GCGC	2 cut(s)	641, 932
HinfI	GANTC	5 cut(s)	59, 207, 677, 863, 926
HpaII	CCGG	2 cut(s)	24, 256
HphI	GGTGA	1 cut(s)	317
Hpy188I	TCNGA	3 cut(s)	252, 435, 619
Hpy188III	TCNNGA	4 cut(s)	74, 232, 610, 674
HpyAV	CCTTC	2 cut(s)	313, 508
HpyCH4IV	ACGT	2 cut(s)	691, 801
HpyCH4V	TGCA	6 cut(s)	98, 188, 278, 328, 541, 878
HpyF10VI	GCNNNNNNNGC	4 cut(s)	104, 538, 795, 839
HpyF3I	CTNAG	1 cut(s)	237
HpySE526I	ACGT	2 cut(s)	691, 801
Hsp92II	CATG	5 cut(s)	14, 161, 223, 343, 635
HspAI	GCGC	2 cut(s)	641, 932
Kzo9I	GATC	2 cut(s)	175, 252
LmnI	GCTCC	1 cut(s)	851
LweI	GCATC	2 cut(s)	237, 865
MaeI	CTAG	3 cut(s)	579, 638, 888
MaeII	ACGT	2 cut(s)	691, 801
MaeIII	GTNAC	4 cut(s)	60, 242, 599, 662
MalI	GATC	2 cut(s)	177, 254
MboI	GATC	2 cut(s)	175, 252
MboII	GAAGA	3 cut(s)	328, 571, 634
MflI	RGATCY	2 cut(s)	175, 252
MlsI	TGGCCA	1 cut(s)	45
MluCI	AATT	7 cut(s)	93, 323, 387, 407, 567, 613, 715
MluNI	TGGCCA	1 cut(s)	45
MlyI	GAGTC	2 cut(s)	68, 201
Mox20I	TGGCCA	1 cut(s)	45
MroXI	GAANNNNTTC	1 cut(s)	633
MscI	TGGCCA	1 cut(s)	45
MseI	TTAA	3 cut(s)	167, 384, 521
MslI	CAYNNNNRTG	1 cut(s)	657
Msp20I	TGGCCA	1 cut(s)	45
MspA1I	CMGCKG	2 cut(s)	792, 881
MspI	CCGG	2 cut(s)	24, 256
MspR9I	CCNGG	3 cut(s)	24, 25, 257
MssI	GTTTAAAC	1 cut(s)	522
Mva1269I	GAATGC	1 cut(s)	457
MwoI	GCNNNNNNNGC	4 cut(s)	104, 538, 795, 839
NciI	CCSGG	3 cut(s)	24, 25, 257
NdeII	GATC	2 cut(s)	175, 252
NlaIII	CATG	5 cut(s)	14, 161, 223, 343, 635
NmuCI	GTSAC	3 cut(s)	60, 242, 599
NspI	RCATGY	1 cut(s)	635
PceI	AGGCCT	1 cut(s)	736
PciI	ACATGT	1 cut(s)	631
PctI	GAATGC	1 cut(s)	457
PdmI	GAANNNNTTC	1 cut(s)	633
PfeI	GAWTC	3 cut(s)	677, 863, 926
PflFI	GACNNNGTC	1 cut(s)	605
PflMI	CCANNNNNTGG	1 cut(s)	770
PleI	GAGTC	2 cut(s)	67, 201
PmeI	GTTTAAAC	1 cut(s)	522
PpsI	GAGTC	2 cut(s)	67, 201
Ppu21I	YACGTR	1 cut(s)	692
PpuMI	RGGWCCY	1 cut(s)	607
PscI	ACATGT	1 cut(s)	631
Psp5II	RGGWCCY	1 cut(s)	607
PspPI	GGNCC	3 cut(s)	14, 32, 607
PspPPI	RGGWCCY	1 cut(s)	607
PstI	CTGCAG	1 cut(s)	190
PstNI	CAGNNNCTG	1 cut(s)	490
PsuI	RGATCY	2 cut(s)	175, 252
PsyI	GACNNNGTC	1 cut(s)	605
PvuII	CAGCTG	1 cut(s)	881
RseI	CAYNNNNRTG	1 cut(s)	657
SaqAI	TTAA	3 cut(s)	167, 384, 521
Sau3AI	GATC	2 cut(s)	175, 252
Sau96I	GGNCC	3 cut(s)	14, 32, 607
SchI	GAGTC	2 cut(s)	68, 201
ScrFI	CCNGG	3 cut(s)	24, 25, 257
SfaNI	GCATC	2 cut(s)	237, 865
SfcI	CTRYAG	1 cut(s)	186
SinI	GGWCC	2 cut(s)	14, 607
SmaI	CCCGGG	1 cut(s)	25
SmiMI	CAYNNNNRTG	1 cut(s)	657
SmlI	CTYRAG	2 cut(s)	209, 469
SmoI	CTYRAG	2 cut(s)	209, 469
Sse9I	AATT	7 cut(s)	93, 323, 387, 407, 567, 613, 715
SseBI	AGGCCT	1 cut(s)	736
SsiI	CCGC	3 cut(s)	7, 172, 792
SspMI	CTAG	3 cut(s)	579, 638, 888
StuI	AGGCCT	1 cut(s)	736
StyD4I	CCNGG	3 cut(s)	22, 23, 255
StyI	CCWWGG	1 cut(s)	700
TaiI	ACGT	2 cut(s)	694, 804
TaqI	TCGA	1 cut(s)	421
TasI	AATT	7 cut(s)	93, 323, 387, 407, 567, 613, 715
TauI	GCSGC	2 cut(s)	10, 795
TfiI	GAWTC	3 cut(s)	677, 863, 926
Tru1I	TTAA	3 cut(s)	167, 384, 521
Tru9I	TTAA	3 cut(s)	167, 384, 521
TseFI	GTSAC	3 cut(s)	60, 242, 599
Tsp45I	GTSAC	3 cut(s)	60, 242, 599
TspDTI	ATGAA	1 cut(s)	560
TspMI	CCCGGG	1 cut(s)	23
Tth111I	GACNNNGTC	1 cut(s)	605
Van91I	CCANNNNNTGG	1 cut(s)	770
VpaK11BI	GGWCC	2 cut(s)	14, 607
XapI	RAATTY	3 cut(s)	387, 613, 715
XceI	RCATGY	1 cut(s)	635
XmaI	CCCGGG	1 cut(s)	23
XmnI	GAANNNNTTC	1 cut(s)	633
XspI	CTAG	3 cut(s)	579, 638, 888

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.