Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0005677

Physical Location & Seq

Genomic Coordinates Reverse (-)

28004033 .. 28005400

Gene Structure 1368 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGACTCTTGGGGTGACTCATTGTGTCGCCGCTGTTCCAACATACCCAATCTCTAAGCATCGACATAAACCTCCTCAGTCTTTCTCTCTGCGGATCTTATCAAAATTGAATCAAGTTTCAGATCTTAAAACTCAGCAGTCGACCTTTTATTCTCTCGAGCCAACAAGAGAGTGTGAGTGCTTCAATATGTACAAGCAGCAGGTTCCTTATAGTCAGGCATGGGATTGGCAGAAGAGCATAGTTGAGGATAAAAAAACTCTGATAGAGAGGAATGAGCATTGCCCAGACTCACTGTTTGTCCTTCAGCATCGTCCTGTGTTTACCTTGGGAACTGCTAGTTCAGAACAGTTCCTTAATTTCGATATCAAGGATGCTCCGTTCGACATTTATCGAACTGAACGTGGCGGCGAGGTTACATATCATGGTCCGGGTCAGATAGTTATGTACCCTATTATGAATCTACGAAATCACAAGATGGATCTTCATTGGTACCTCAGGTCACTTGAGGAGGTGATTATCCGTGCTCTTTCAAAGACATTCTGTATCAAGGCATCTCGGCTTGAGGGCCTCACTGGTGTTTGGTATGGAAACCAGAAACTGGCAGCCATTGGAATACGAGTCAAACAGTGGATAACATATCATGGCTTAGCAGTGAATGTGAATACAGACTTGACCCCTTTTCGTTGGATTGTACCTTGTGGGTTACAAGGCTATCAGGTTGGAAGCATTAAAGGCTTGCTTGAGGAATTTCAGACATCTGCAGAGTGTGGAATAGCAGATCTACATGATCCCGATGATGGCCAGCTACTTGATATTACTTGTAGATCTTTGATCCATGAGTTTTCAGAAGTTTTCCAGGTTAGAATCAATTATGAAACCGTGTCAAGTTTGGATTTACAAGCCATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009249 GO:0009987 GO:0010467 GO:0018065 GO:0018193 GO:0018205 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0051604 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00785 ko01100 map00785 map01100

Pfam Domains

Protein Families

BPL_LplA_LipB

Protein Analysis

303

Amino Acids

34.64

Weight (kDa)

6.41

Isoelectric Point (pI)

46.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LplA-B_cat	PF21948	70 - 249	6.8e-39	Lipoyl protein ligase A/B catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005677)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47578 AT4G31050
fragaria_vesca	FvH4_2g26090 FvH4_2g26090
malus_domestica	MD06G1010800.v1.1
prunus_persica	Prupe.5G012900_v2.0.a1 Prupe.5G012900_v2.0.a1
pyrus_communis	pycom16g25840
rosa_chinensis	RchiOBHm_Chr5g0074221 RchiOBHm_Chr6g0294461
rosa_laevigata	RLG00000011867 RLG00000036458
rosa_multiflora	Rmu_co8046078.1_g000001 Rmu_sc0000573.1_g000055 Rmu_sc0004706.1_g000002 Rmu_ssc0000248.1_g000010
rosa_roxburghii	Rroxscaffold_1G00007250 Rroxscaffold_7G00173310
rosa_rugosa	Rorug05G0429500 Rorug06G0244800
rosa_samantha	Rh5DG520100 Rh5DG520400 Rh6AG357400 Rh6BG364300 Rh6CG371400 Rh6DG358200
rosa_wichuraiana	Rw5G045220 Rw6G031150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	190
Acc65I	GGTACC	1 cut(s)	489
AccB1I	GGYRCC	1 cut(s)	489
AccB7I	CCANNNNNTGG	1 cut(s)	598
AccI	GTMKAC	1 cut(s)	140
AciI	CCGC	3 cut(s)	30, 91, 405
AclWI	GGATC	4 cut(s)	101, 486, 782, 826
AcoI	YGGCCR	1 cut(s)	799
AcsI	RAATTY	1 cut(s)	746
AcuI	CTGAAG	1 cut(s)	287
AfaI	GTAC	4 cut(s)	191, 446, 491, 693
AfiI	CCNNNNNNNGG	2 cut(s)	598, 797
AgsI	TTSAA	3 cut(s)	109, 184, 531
AjnI	CCWGG	1 cut(s)	855
AloI	GAACNNNNNNTCC	2 cut(s)	362, 394
AluBI	AGCT	1 cut(s)	805
AluI	AGCT	1 cut(s)	805
Alw21I	GWGCWC	1 cut(s)	526
AlwI	GGATC	4 cut(s)	101, 486, 782, 826
AlwNI	CAGNNNCTG	1 cut(s)	598
Ama87I	CYCGRG	1 cut(s)	155
AoxI	GGCC	2 cut(s)	565, 799
ApeKI	GCWGC	2 cut(s)	196, 602
ApoI	RAATTY	1 cut(s)	746
ArsI	GACNNNNNNTTYG	2 cut(s)	278, 310
Asp718I	GGTACC	1 cut(s)	489
AspS9I	GGNCC	2 cut(s)	425, 565
AsuC2I	CCSGG	1 cut(s)	429
AsuHPI	GGTGA	2 cut(s)	25, 523
AvaI	CYCGRG	1 cut(s)	155
AvaII	GGWCC	1 cut(s)	425
AxyI	CCTNAGG	1 cut(s)	494
BalI	TGGCCA	1 cut(s)	801
BanI	GGYRCC	1 cut(s)	489
Bbv12I	GWGCWC	1 cut(s)	526
BbvI	GCAGC	2 cut(s)	208, 614
BccI	CCATC	2 cut(s)	469, 791
BciT130I	CCWGG	1 cut(s)	857
BcnI	CCSGG	1 cut(s)	429
BfaI	CTAG	1 cut(s)	336
BfmI	CTRYAG	1 cut(s)	759
BfuAI	ACCTGC	1 cut(s)	190
BglII	AGATCT	3 cut(s)	121, 778, 824
BisI	GCNGC	4 cut(s)	30, 197, 406, 603
BlpI	GCTNAGC	1 cut(s)	646
BlsI	GCNGC	4 cut(s)	31, 198, 407, 604
Bme1390I	CCNGG	2 cut(s)	429, 857
Bme18I	GGWCC	1 cut(s)	425
BmeT110I	CYCGRG	1 cut(s)	155
BmgT120I	GGNCC	2 cut(s)	425, 565
BmiI	GGNNCC	2 cut(s)	204, 491
BmrFI	CCNGG	2 cut(s)	429, 857
BmsI	GCATC	4 cut(s)	67, 316, 361, 560
Bpu1102I	GCTNAGC	1 cut(s)	646
BpuEI	CTTGAG	3 cut(s)	524, 581, 761
BpuMI	CCSGG	1 cut(s)	429
BsaJI	CCNNGG	1 cut(s)	324
Bsc4I	CCNNNNNNNGG	2 cut(s)	598, 797
Bse1I	ACTGG	2 cut(s)	577, 603
Bse21I	CCTNAGG	1 cut(s)	494
Bse3DI	GCAATG	1 cut(s)	277
BseBI	CCWGG	1 cut(s)	857
BseDI	CCNNGG	1 cut(s)	324
BseGI	GGATG	1 cut(s)	376
BseLI	CCNNNNNNNGG	2 cut(s)	598, 797
BseMI	GCAATG	1 cut(s)	277
BseMII	CTCAG	3 cut(s)	89, 146, 508
BseNI	ACTGG	2 cut(s)	577, 603
BseRI	GAGGAG	2 cut(s)	63, 521
BseXI	GCAGC	2 cut(s)	208, 614
BshFI	GGCC	2 cut(s)	567, 801
BshNI	GGYRCC	1 cut(s)	489
BsiHKAI	GWGCWC	1 cut(s)	526
BsiHKCI	CYCGRG	1 cut(s)	155
BsiSI	CCGG	1 cut(s)	428
BslI	CCNNNNNNNGG	2 cut(s)	598, 797
BsnI	GGCC	2 cut(s)	567, 801
BsoBI	CYCGRG	1 cut(s)	155
Bsp1286I	GDGCHC	1 cut(s)	526
Bsp1407I	TGTACA	1 cut(s)	189
Bsp143I	GATC	7 cut(s)	93, 121, 478, 778, 787, 824, 831
Bsp1720I	GCTNAGC	1 cut(s)	646
BspACI	CCGC	3 cut(s)	30, 91, 405
BspANI	GGCC	2 cut(s)	567, 801
BspCNI	CTCAG	3 cut(s)	88, 145, 507
BspLI	GGNNCC	2 cut(s)	204, 491
BspMAI	CTGCAG	1 cut(s)	763
BspMI	ACCTGC	1 cut(s)	190
BspPI	GGATC	4 cut(s)	101, 486, 782, 826
BspQI	GCTCTTC	1 cut(s)	227
BspT107I	GGYRCC	1 cut(s)	489
BsrDI	GCAATG	1 cut(s)	277
BsrGI	TGTACA	1 cut(s)	189
BsrI	ACTGG	2 cut(s)	577, 603
BssECI	CCNNGG	1 cut(s)	324
BssMI	GATC	7 cut(s)	93, 121, 478, 778, 787, 824, 831
BssT1I	CCWWGG	1 cut(s)	324
Bst2UI	CCWGG	1 cut(s)	857
Bst4CI	ACNGT	4 cut(s)	294, 348, 627, 880
Bst6I	CTCTTC	1 cut(s)	227
BstAUI	TGTACA	1 cut(s)	189
BstC8I	GCNNGC	2 cut(s)	737, 803
BstDEI	CTNAG	5 cut(s)	54, 75, 132, 494, 646
BstF5I	GGATG	1 cut(s)	376
BstKTI	GATC	7 cut(s)	96, 124, 481, 781, 790, 827, 834
BstMBI	GATC	7 cut(s)	93, 121, 478, 778, 787, 824, 831
BstMWI	GCNNNNNNNGC	1 cut(s)	732
BstNI	CCWGG	1 cut(s)	857
BstSCI	CCNGG	2 cut(s)	427, 855
BstSFI	CTRYAG	1 cut(s)	759
BstV1I	GCAGC	2 cut(s)	208, 614
BstX2I	RGATCY	5 cut(s)	93, 121, 478, 778, 824
BstYI	RGATCY	5 cut(s)	93, 121, 478, 778, 824
Bsu36I	CCTNAGG	1 cut(s)	494
BsuRI	GGCC	2 cut(s)	567, 801
BtsCI	GGATG	1 cut(s)	376
BtsI	GCAGTG	1 cut(s)	657
BtsIMutI	CAGTG	4 cut(s)	290, 570, 632, 657
BveI	ACCTGC	1 cut(s)	190
Cac8I	GCNNGC	2 cut(s)	737, 803
CaiI	CAGNNNCTG	1 cut(s)	598
Cfr13I	GGNCC	2 cut(s)	425, 565
Csp6I	GTAC	4 cut(s)	190, 445, 490, 692
CviAII	CATG	5 cut(s)	219, 422, 641, 785, 836
CviQI	GTAC	4 cut(s)	190, 445, 490, 692
DdeI	CTNAG	5 cut(s)	54, 75, 132, 494, 646
DpnI	GATC	7 cut(s)	95, 123, 480, 780, 789, 826, 833
DpnII	GATC	7 cut(s)	93, 121, 478, 778, 787, 824, 831
EaeI	YGGCCR	1 cut(s)	799
Eam1104I	CTCTTC	1 cut(s)	227
EarI	CTCTTC	1 cut(s)	227
Eco130I	CCWWGG	1 cut(s)	324
Eco32I	GATATC	1 cut(s)	364
Eco47I	GGWCC	1 cut(s)	425
Eco57I	CTGAAG	1 cut(s)	287
Eco81I	CCTNAGG	1 cut(s)	494
Eco88I	CYCGRG	1 cut(s)	155
EcoO109I	RGGNCCY	1 cut(s)	565
EcoRII	CCWGG	1 cut(s)	855
EcoRV	GATATC	1 cut(s)	364
EcoT14I	CCWWGG	1 cut(s)	324
ErhI	CCWWGG	1 cut(s)	324
FaeI	CATG	5 cut(s)	222, 425, 644, 788, 839
FalI	AAGNNNNNCTT	2 cut(s)	723, 755
FatI	CATG	5 cut(s)	218, 421, 640, 784, 835
FblI	GTMKAC	1 cut(s)	140
Fnu4HI	GCNGC	4 cut(s)	30, 197, 406, 603
FokI	GGATG	1 cut(s)	383
Fsp4HI	GCNGC	4 cut(s)	30, 197, 406, 603
FspBI	CTAG	1 cut(s)	336
GluI	GCNGC	4 cut(s)	30, 197, 406, 603
HaeIII	GGCC	2 cut(s)	567, 801
HapII	CCGG	1 cut(s)	428
Hin1II	CATG	5 cut(s)	222, 425, 644, 788, 839
HincII	GTYRAC	1 cut(s)	141
HindII	GTYRAC	1 cut(s)	141
HinfI	GANTC	7 cut(s)	4, 16, 109, 287, 457, 618, 864
HpaII	CCGG	1 cut(s)	428
HphI	GGTGA	2 cut(s)	25, 523
Hpy166II	GTNNAC	2 cut(s)	141, 321
Hpy188I	TCNGA	7 cut(s)	121, 261, 343, 435, 753, 847, 908
Hpy188III	TCNNGA	2 cut(s)	155, 791
Hpy8I	GTNNAC	2 cut(s)	141, 321
HpyAV	CCTTC	1 cut(s)	311
HpyCH4III	ACNGT	4 cut(s)	294, 348, 627, 880
HpyCH4IV	ACGT	1 cut(s)	400
HpyCH4V	TGCA	1 cut(s)	761
HpyF10VI	GCNNNNNNNGC	1 cut(s)	732
HpyF3I	CTNAG	5 cut(s)	54, 75, 132, 494, 646
HpySE526I	ACGT	1 cut(s)	400
Hsp92II	CATG	5 cut(s)	222, 425, 644, 788, 839
KpnI	GGTACC	1 cut(s)	493
Kzo9I	GATC	7 cut(s)	93, 121, 478, 778, 787, 824, 831
LguI	GCTCTTC	1 cut(s)	227
LmnI	GCTCC	1 cut(s)	379
Lsp1109I	GCAGC	2 cut(s)	208, 614
LweI	GCATC	4 cut(s)	67, 316, 361, 560
MaeI	CTAG	1 cut(s)	336
MaeII	ACGT	1 cut(s)	400
MaeIII	GTNAC	4 cut(s)	13, 412, 498, 702
MalI	GATC	7 cut(s)	95, 123, 480, 780, 789, 826, 833
MboI	GATC	7 cut(s)	93, 121, 478, 778, 787, 824, 831
MboII	GAAGA	2 cut(s)	244, 473
MflI	RGATCY	5 cut(s)	93, 121, 478, 778, 824
MhlI	GDGCHC	1 cut(s)	526
MlsI	TGGCCA	1 cut(s)	801
MluCI	AATT	4 cut(s)	104, 355, 746, 868
MluNI	TGGCCA	1 cut(s)	801
MlyI	GAGTC	3 cut(s)	10, 281, 627
MmeI	TCCRAC	3 cut(s)	62, 665, 700
Mox20I	TGGCCA	1 cut(s)	801
MscI	TGGCCA	1 cut(s)	801
MseI	TTAA	3 cut(s)	126, 354, 729
Msp20I	TGGCCA	1 cut(s)	801
MspA1I	CMGCKG	1 cut(s)	32
MspI	CCGG	1 cut(s)	428
MspR9I	CCNGG	2 cut(s)	429, 857
MvaI	CCWGG	1 cut(s)	857
MwoI	GCNNNNNNNGC	1 cut(s)	732
NciI	CCSGG	1 cut(s)	429
NdeII	GATC	7 cut(s)	93, 121, 478, 778, 787, 824, 831
NlaIII	CATG	5 cut(s)	222, 425, 644, 788, 839
NlaIV	GGNNCC	2 cut(s)	204, 491
NmeAIII	GCCGAG	1 cut(s)	535
NmuCI	GTSAC	2 cut(s)	13, 498
PaeR7I	CTCGAG	1 cut(s)	155
PciSI	GCTCTTC	1 cut(s)	227
PcsI	WCGNNNNNNNCGW	1 cut(s)	397
PfeI	GAWTC	3 cut(s)	109, 457, 864
PflMI	CCANNNNNTGG	1 cut(s)	598
PkrI	GCNGC	4 cut(s)	31, 198, 407, 604
PleI	GAGTC	3 cut(s)	10, 281, 626
PpsI	GAGTC	3 cut(s)	10, 281, 626
Psp6I	CCWGG	1 cut(s)	855
PspGI	CCWGG	1 cut(s)	855
PspN4I	GGNNCC	2 cut(s)	204, 491
PspPI	GGNCC	2 cut(s)	425, 565
PstI	CTGCAG	1 cut(s)	763
PstNI	CAGNNNCTG	1 cut(s)	598
PsuI	RGATCY	5 cut(s)	93, 121, 478, 778, 824
RsaI	GTAC	4 cut(s)	191, 446, 491, 693
RsaNI	GTAC	4 cut(s)	190, 445, 490, 692
SalI	GTCGAC	1 cut(s)	139
SapI	GCTCTTC	1 cut(s)	227
SaqAI	TTAA	3 cut(s)	126, 354, 729
SatI	GCNGC	4 cut(s)	30, 197, 406, 603
Sau3AI	GATC	7 cut(s)	93, 121, 478, 778, 787, 824, 831
Sau96I	GGNCC	2 cut(s)	425, 565
SchI	GAGTC	3 cut(s)	10, 281, 627
ScrFI	CCNGG	2 cut(s)	429, 857
SduI	GDGCHC	1 cut(s)	526
SfaNI	GCATC	4 cut(s)	67, 316, 361, 560
SfcI	CTRYAG	1 cut(s)	759
Sfr274I	CTCGAG	1 cut(s)	155
SinI	GGWCC	1 cut(s)	425
SlaI	CTCGAG	1 cut(s)	155
SmlI	CTYRAG	4 cut(s)	155, 503, 560, 740
SmoI	CTYRAG	4 cut(s)	155, 503, 560, 740
Sse9I	AATT	4 cut(s)	104, 355, 746, 868
SsiI	CCGC	3 cut(s)	30, 91, 405
SspMI	CTAG	1 cut(s)	336
StyD4I	CCNGG	2 cut(s)	427, 855
StyI	CCWWGG	1 cut(s)	324
TaaI	ACNGT	4 cut(s)	294, 348, 627, 880
TaiI	ACGT	1 cut(s)	403
TaqI	TCGA	6 cut(s)	61, 140, 156, 360, 381, 391
TasI	AATT	4 cut(s)	104, 355, 746, 868
TatI	WGTACW	1 cut(s)	189
TauI	GCSGC	2 cut(s)	32, 408
TfiI	GAWTC	3 cut(s)	109, 457, 864
Tru1I	TTAA	3 cut(s)	126, 354, 729
Tru9I	TTAA	3 cut(s)	126, 354, 729
TscAI	CASTG	4 cut(s)	297, 577, 632, 657
TseFI	GTSAC	2 cut(s)	13, 498
TseI	GCWGC	2 cut(s)	196, 602
Tsp45I	GTSAC	2 cut(s)	13, 498
TspDTI	ATGAA	3 cut(s)	470, 473, 888
TspGWI	ACGGA	2 cut(s)	366, 509
TspRI	CASTG	4 cut(s)	297, 577, 632, 657
Van91I	CCANNNNNTGG	1 cut(s)	598
VpaK11BI	GGWCC	1 cut(s)	425
XapI	RAATTY	1 cut(s)	746
XhoI	CTCGAG	1 cut(s)	155
XmiI	GTMKAC	1 cut(s)	140
XspI	CTAG	1 cut(s)	336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.