pycom17g01470

HAUS augmin-like complex subunit 6 N-terminus

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Forward (+)
998351 .. 999663
1313 bp
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UTR
Exon/CDS
Intron
pycom17g01470.2

Sequence Viewer

Length: 624 bp
ATGCATAAGCGCCCTACTTCAGTTGCTCAATCAAACCAAATAGAGAACTTTCCTGAAAGGAAGTCTGTGGAGCAGCCTCTTTCAAGTAATCACATAGATAATCTACAACAAGATGGTGACAATTATTATGTTCAGAATCTAAAGAGATCTGTTAGAGAAGCTGCTTTGTCACGGAATTCCTTAAGTTCCAAATCATCACAAGGCAGCCATTCTGATGAAAGCTCTGAGCATTTCTTTTTACCTCTTTCACCATCTGGGGTTTCTCGTCTAGGCCAAGAATCTAAAGGGGCTTCATTAAGGAGTAAAAGGTTTCCATCTCAGACGGAGGCTTCCTTTCATGAAAATCGCGCTCCTGATGGTAATGTGGGGAGCAAGTACGCCGAATTATCTGAAGTATTGAATGGTTTAGATTCACTTGATGATTATGACCAAGTAAATGGGTTTCTTTCGGCTGCTGGTTCAAACTGTGCTGTTTCAGACACACAGAGATCATTTTATGACTTTGAAGAAGCTCAGGAGCAGGTTTTCTCACCTCCTTTGCTAATGGACTCATCACTATTAGCAGATTATGAGGACTTACTTGCACCACTTTCAGAAACTGAAACAGCCTTAATGGAGCACTGA

Protein Analysis

208

Amino Acids

22.87

Weight (kDa)

4.69

Isoelectric Point (pI)

69.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 511
AccII CGCG 1 cut(s) 348
AcsI RAATTY 1 cut(s) 175
AcuI CTGAAG 1 cut(s) 411
AfaI GTAC 1 cut(s) 377
AflII CTTAAG 1 cut(s) 181
AgsI TTSAA 4 cut(s) 84, 400, 462, 506
AluBI AGCT 3 cut(s) 161, 222, 512
AluI AGCT 3 cut(s) 161, 222, 512
Alw21I GWGCWC 1 cut(s) 621
AlwNI CAGNNNCTG 1 cut(s) 599
AoxI GGCC 1 cut(s) 271
ApeKI GCWGC 4 cut(s) 73, 161, 204, 452
ApoI RAATTY 1 cut(s) 175
AspLEI GCGC 2 cut(s) 12, 350
AsuHPI GGTGA 3 cut(s) 128, 240, 522
Bbv12I GWGCWC 1 cut(s) 621
BbvI GCAGC 4 cut(s) 85, 148, 216, 439
BccI CCATC 4 cut(s) 107, 259, 322, 350
BfaI CTAG 1 cut(s) 269
BfoI RGCGCY 1 cut(s) 13
BfrI CTTAAG 1 cut(s) 181
BfuAI ACCTGC 1 cut(s) 511
BglII AGATCT 1 cut(s) 146
BisI GCNGC 4 cut(s) 74, 162, 205, 453
BlsI GCNGC 4 cut(s) 75, 163, 206, 454
Bpu10I CCTNAGC 1 cut(s) 513
BseMII CTCAG 3 cut(s) 216, 332, 527
BseXI GCAGC 4 cut(s) 85, 148, 216, 439
Bsh1236I CGCG 1 cut(s) 348
BshFI GGCC 1 cut(s) 273
BsiHKAI GWGCWC 1 cut(s) 621
BsnI GGCC 1 cut(s) 273
Bsp1286I GDGCHC 1 cut(s) 621
Bsp143I GATC 2 cut(s) 146, 488
BspANI GGCC 1 cut(s) 273
BspCNI CTCAG 3 cut(s) 217, 331, 526
BspFNI CGCG 1 cut(s) 348
BspHI TCATGA 1 cut(s) 337
BspMI ACCTGC 1 cut(s) 511
BspTI CTTAAG 1 cut(s) 181
BssMI GATC 2 cut(s) 146, 488
Bst4CI ACNGT 1 cut(s) 467
BstAFI CTTAAG 1 cut(s) 181
BstDEI CTNAG 3 cut(s) 225, 318, 513
BstFNI CGCG 1 cut(s) 348
BstH2I RGCGCY 1 cut(s) 13
BstHHI GCGC 2 cut(s) 12, 350
BstKTI GATC 2 cut(s) 149, 491
BstMBI GATC 2 cut(s) 146, 488
BstUI CGCG 1 cut(s) 348
BstV1I GCAGC 4 cut(s) 85, 148, 216, 439
BstX2I RGATCY 1 cut(s) 146
BstXI CCANNNNNNTGG 1 cut(s) 437
BstYI RGATCY 1 cut(s) 146
BsuRI GGCC 1 cut(s) 273
BtsIMutI CAGTG 1 cut(s) 619
BveI ACCTGC 1 cut(s) 511
CaiI CAGNNNCTG 1 cut(s) 599
CciI TCATGA 1 cut(s) 337
CfoI GCGC 2 cut(s) 12, 350
Csp6I GTAC 1 cut(s) 376
CviAII CATG 1 cut(s) 338
CviQI GTAC 1 cut(s) 376
DdeI CTNAG 3 cut(s) 225, 318, 513
DpnI GATC 2 cut(s) 148, 490
DpnII GATC 2 cut(s) 146, 488
Eco57I CTGAAG 1 cut(s) 411
EcoRI GAATTC 1 cut(s) 175
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 1 cut(s) 341
FaiI YATR 7 cut(s) 6, 95, 129, 339, 426, 498, 570
FatI CATG 1 cut(s) 337
Fnu4HI GCNGC 4 cut(s) 74, 162, 205, 453
Fsp4HI GCNGC 4 cut(s) 74, 162, 205, 453
FspBI CTAG 1 cut(s) 269
GlaI GCGC 2 cut(s) 11, 349
GluI GCNGC 4 cut(s) 74, 162, 205, 453
HaeII RGCGCY 1 cut(s) 13
HaeIII GGCC 1 cut(s) 273
HhaI GCGC 2 cut(s) 12, 350
Hin1II CATG 1 cut(s) 341
Hin6I GCGC 2 cut(s) 10, 348
HinP1I GCGC 2 cut(s) 10, 348
HinfI GANTC 4 cut(s) 136, 278, 410, 548
HphI GGTGA 3 cut(s) 128, 240, 522
Hpy188I TCNGA 7 cut(s) 135, 214, 226, 321, 391, 478, 595
Hpy188III TCNNGA 4 cut(s) 53, 338, 353, 515
HpyCH4III ACNGT 1 cut(s) 467
HpyCH4V TGCA 2 cut(s) 4, 584
HpyF3I CTNAG 3 cut(s) 225, 318, 513
Hsp92II CATG 1 cut(s) 341
HspAI GCGC 2 cut(s) 10, 348
Kzo9I GATC 2 cut(s) 146, 488
LmnI GCTCC 5 cut(s) 70, 355, 369, 517, 616
LpnPI CCDG 6 cut(s) 66, 240, 366, 441, 500, 506
Lsp1109I GCAGC 4 cut(s) 85, 148, 216, 439
MaeI CTAG 1 cut(s) 269
MaeIII GTNAC 2 cut(s) 116, 168
MalI GATC 2 cut(s) 148, 490
MboI GATC 2 cut(s) 146, 488
MboII GAAGA 1 cut(s) 518
MflI RGATCY 1 cut(s) 146
MhlI GDGCHC 1 cut(s) 621
MluCI AATT 3 cut(s) 121, 175, 383
MlyI GAGTC 1 cut(s) 542
MnlI CCTC 5 cut(s) 87, 252, 319, 543, 565
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 3 cut(s) 182, 296, 611
MslI CAYNNNNRTG 1 cut(s) 213
MspCI CTTAAG 1 cut(s) 181
MvnI CGCG 1 cut(s) 348
NdeII GATC 2 cut(s) 146, 488
NlaIII CATG 1 cut(s) 341
NmuCI GTSAC 2 cut(s) 116, 168
NsiI ATGCAT 1 cut(s) 6
PagI TCATGA 1 cut(s) 337
PfeI GAWTC 3 cut(s) 136, 278, 410
PkrI GCNGC 4 cut(s) 75, 163, 206, 454
PleI GAGTC 1 cut(s) 542
PpsI GAGTC 1 cut(s) 542
PstNI CAGNNNCTG 1 cut(s) 599
PsuI RGATCY 1 cut(s) 146
RsaI GTAC 1 cut(s) 377
RsaNI GTAC 1 cut(s) 376
RseI CAYNNNNRTG 1 cut(s) 213
SaqAI TTAA 3 cut(s) 182, 296, 611
SatI GCNGC 4 cut(s) 74, 162, 205, 453
Sau3AI GATC 2 cut(s) 146, 488
SchI GAGTC 1 cut(s) 542
SduI GDGCHC 1 cut(s) 621
SetI ASST 7 cut(s) 163, 224, 244, 311, 514, 525, 535
SmiMI CAYNNNNRTG 1 cut(s) 213
SmlI CTYRAG 1 cut(s) 181
SmoI CTYRAG 1 cut(s) 181
Sse9I AATT 3 cut(s) 121, 175, 383
SspMI CTAG 1 cut(s) 269
TaaI ACNGT 1 cut(s) 467
TasI AATT 3 cut(s) 121, 175, 383
TfiI GAWTC 3 cut(s) 136, 278, 410
Tru1I TTAA 3 cut(s) 182, 296, 611
Tru9I TTAA 3 cut(s) 182, 296, 611
TseFI GTSAC 2 cut(s) 116, 168
TseI GCWGC 4 cut(s) 73, 161, 204, 452
Tsp45I GTSAC 2 cut(s) 116, 168
TspDTI ATGAA 4 cut(s) 231, 282, 326, 354
TspGWI ACGGA 2 cut(s) 187, 338
Vha464I CTTAAG 1 cut(s) 181
XapI RAATTY 1 cut(s) 175
XspI CTAG 1 cut(s) 269
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.