Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002442

Physical Location & Seq

Genomic Coordinates Reverse (-)

70055386 .. 70060645

Gene Structure 5260 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0575600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3297 bp

ATGGTCAAGACAGTTTACTTGTTTGGATTTCCCACTGTGGAGTCTCCAGAAGCAGTGACAAAATTTCTGGAGGAGTATACTGGAGAAGGAACTGTTATCTCTGTGAATGTTCTTCCTCCAAAAGATGGCGCATCAAGATCATCTGCCATAGTTGAATTCACAACTGCAGAATGTGCTGAAATAATAATTCCATTAGCCGATAATCGATGCCTGTGGTATGGAGAGTCTTATCTGAAAGCTCGAGAATGGAAGCATGACTTGGCACCGAAATCAAAAGTCTTGGAGGAACTTGTGACACTTCACTTTGGATGCAAGATATCTGAGGAGATGTTTTCGGTGCTTTGGACAAAATCAGATGTTTCTGTGACATTTGGGATGGAACTGAAAAATGTGCACTTGTCTTTCTCCTATGATTGTGCTAAATACAAGCTTGAGCTCCCATCTGATACTATTTGCCGGATTGAGCTGCGTTGTCCACTTGGTCAGTTTACCCGTCTTATCATCCAGTTACGTGGTGCCCCTCGGATTTATAAGAAAAATGTAACTTCGGCTTCTGACAACTCCTGGGTTCGAGAAGTTGATTTCACTCCATCATGTTGCATCGGGCAATCCTCTTCTTTATGTTTGGAGCTTCCATTAAGTTGTGCACTTCCAGACCTAGGCGAGAGTTTCATTCACTATATAGAGAATAAAGGACAGTTTGTGCTGAAGACGGGTAACACTTTCTCCGGAAATTCAGCTTTTGTTCCTATTCTGGCTCCACCCCTAGGGATTGACTTGCCATTTAAAATCCTGTTCAAGATAAATTCACTGGTTCAGCATGGTTGTATTCCCGGGCAAGCTCTTGATGTCAGTTTCTATAATCTAGTGGATCCTACTGGAATAAGAATTGAATATATAGAGTGTGCCCTGGACAAACTGTTTAACTCCAAGGAGTGCTGCTATGAACCTGTGAGGTGGCTTCTTAAGCAGTACGAAATGTACCAGGCATGCAAGCAGATTCCTCAGTCACCAGCTATATTTTTAGATGAAGACTTTGTGTATGTACACAGGGTTCAGATTACACCATGTAAAGTATACTTCTGTGGTCCAGAGGTAAATCTCTCCAATCGGGTTTTACGAAATTATCCTGAAGATATTGACAATTTTCTTCGGGTTTCTTTTGTTGATGAGGACTTGGGGAAGATGCATTCTGTAGATTTGTGTCCGCGGACAGGTTGTGCAGAAGAGGAGAGGAGAACTAGAGTTTATGAAAGGATATTTTCTACACTAAGAGATGGGATAGTGATTGGTGAAAAGAAATTTGAGTTTCTTGCATCTTCATCTAGTCAATTGCGAGAACACTCTGCTTGGATGTTTGCTTCCAGAAGCGGCCTTACTGCACAAGGAATTAGAGACTGGATGGGTGATTTTAGTCAAATTAAAAATGCCGCTAAATATGCAGCCAGGCTTGGACAGTCTTTCAGCTCTTCCAGGGAGACTTTCAGTGTTGGATTGGATGAAATTGAAGTCATTCCTGATGTAGAAATTGAAAGAGGCAGAACCAAATATTGCTTCTCTGATGGAATTGGGAAGATATCTGCTGATTTTGCTGAAAAAGTGGCAAGAAAGTGTGGGAAAAGTTCTACTCCATCCGCCTTTCAAATCCGCTATGCTGGCTACAAAGGCATTGTGGCAGTTGATCCAAAATTGTCAAAGAAGCTGGCATTGAGAAAGAGCATGTGCAAGTTCAAATCACTCAACACAAAGTTAGATGTCCTGGCATGGAGCAGGTACCAACCTTGTTTCCTCAATCGTCAATTGATTACCCTTTTGTCCACCCTTGGAGTTCGGGATCTTGTTTTTGAGAAGAAGCAAAAGCTGGCAATGAATCAGTTGGAAGGGATTCTAACTGATCCATTGAAAGCACAGGAGGCACTGGAATTGATGTTCCATGGAGAGGCGACGAATGTTTTAAAGGAAATGTTGATGTTTTATAAGCCAAATGCAGAGCCATTTCTCTCATTGATGCTACAATCATTATGTGCATCAAAACTTGCGGAACTACGGAGCAGAACACGAATTTTTGTTCCAAATGGAAGATCTATGAAGGGATGTCTAGATGAAACCAGGACATTGGAATATGGTCAGGTATTTGTGCAATGTTCTCACCATGCTATCTTCGATGGCAGCACTACAACTGCAAGCCAAGAGAATTTTACTGTTGAGGGCAAAGTAGTTGTTGCTAAACACCCGTGTTTACACCCGGGAGATGTGCGTGTTCTTATGGCTGTGGATGTGCCGGCGTTACACCACATGGTGGATTGTGTCGTGTTCCCCCAAAAAGGAAAGAGGCCTCATCCTAATGAATGCTCAGGCAGCGATTTAGATGGAGATGATTACTTTGTCAGTTGGGATCGTGACCTGATTCCACCGCGGCAAACTGAACCCATGAACTATAACCCAGCACCAACTGTGGAATTGGATCATAATGTTACAATGGAGGAAGTTGCGGAGTCCTTTACCAATTACATAGTGAATGACAACTTGGGCATCATTTCACATGCACATCTTGCCTTTGCAGACAGAAAACCACGGAAGGCTATGAGTGATGAATGTATTGAACTCGCAACGCTCCACTCCCATGCTGTTGATTCTCCTAAAACTGGTGTACTAGTGAAACTGCCGCGTAGACTGCGTGTCCAAGAATACCCAGATTTCATGGAAAAGATTGACAGGAAAACCTATGAGTCCAAGTGTGTGATTGGGAAGCTTTTCCGACAGGTGAAAGATATCGAGCTAGGATCGGATTCACACTCTTTTAAATTCAAGTCCTTCACTAGGGAAGTGGCTAGGAGGTTTTATGATACTGACATGGAGGTAGATGGATTCGAAGATTACATAAATGATGCCATGAGTTACAAAAGTAAGTATGACTACAAGCTGGGAAACCTGATGGACTATTATGGTATCAAAACTGAAGCTGAAATACTGAGTGGAAATGTTTCCAATGTATCAAAGTTCTTCAAGAGAAAGGACTTGGAGTCAATTAACTACGCTGTGAGGTCATTGAAGAAGGAAGCAAGGACATGGTTTATGGAGAAGCCAAATGGCGAAGATCCATCAGATTTCGGAACTGATATTGATAATGTGTATGCAGCCAAAGCATCAGCATGGTACCATGTTACATATCATCATCGTTACTGGGGTTGCAACAACAAGGCTATGGCAAGAGACCATTTCCTGAGTTTTCCATGGTGTGTTTTCGACATGCTCATCCAGATCAAGAGGGAGAAAACAAGTAGAAGAAATCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005856 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0008017 GO:0008092 GO:0008150 GO:0009524 GO:0009553 GO:0009555 GO:0009561 GO:0009987 GO:0015630 GO:0015631 GO:0016043 GO:0032501 GO:0032502 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0048229 GO:0048856 GO:0051011 GO:0055046 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAUS6_N

Protein Analysis

1098

Amino Acids

124.98

Weight (kDa)

6.84

Isoelectric Point (pI)

38.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_RdRP1_2	PF26250	4 - 84	3.7e-12	RdRP1/2, RRM domain
PH_RDR2	PF24823	100 - 234	2.7e-29	RDR2 PH-like domain
RdRP_helical	PF26252	252 - 327	1e-11	RNA dependent RNA polymerase, helical domain
RdRP	PF05183	354 - 922	2.1e-192	RNA dependent RNA polymerase
RdRP_head	PF26253	948 - 1096	5.3e-41	RdRP, head domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0002442)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40740
fragaria_vesca	FvH4_6g52640 FvH4_6g52640 FvH4_6g52640 FvH4_6g52640 FvH4_6g52640 FvH4_6g52640
malus_domestica	MD09G1017400.v1.1 MD17G1018200.v1.1
prunus_persica	Prupe.3G299500_v2.0.a1 Prupe.3G299500_v2.0.a1
pyrus_communis	pycom111g01430 pycom17g01460 pycom17g01470
rosa_chinensis	RchiOBHm_Chr2g0096321 RchiOBHm_Chr2g0166591 RchiOBHm_Chr2g0174171 RchiOBHm_Chr5g0045391 RchiOBHm_Chr6g0248711
rosa_laevigata	RLG00000022253
rosa_multiflora	Rmu_sc0002045.1_g000024 Rmu_ssc0000100.1_g000024 Rmu_ssc0000198.1_g000004
rosa_roxburghii	Rroxscaffold_2G00078390 Rroxscaffold_3G00231180
rosa_rugosa	Rorug02G0575600 Rorug02G0575600
rosa_samantha	Rh2AG655000 Rh2BG666200 Rh2CG630400 Rh2DG680800 Rh4CG097900 Rh5BG312100 Rh5BG536100 Rh5BG536300 Rh5CG559500 Rh5DG322800 Rh6CG160100
rosa_wichuraiana	Rw2G053760 Rw6G003620 Rw7G025810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	531, 1977
Acc36I	ACCTGC	1 cut(s)	1761
Acc65I	GGTACC	2 cut(s)	1773, 3156
AccB1I	GGYRCC	4 cut(s)	262, 515, 1773, 3156
AccB7I	CCANNNNNTGG	2 cut(s)	125, 2299
AccI	GTMKAC	3 cut(s)	77, 1077, 2671
AccII	CGCG	3 cut(s)	1210, 2416, 2668
AccIII	TCCGGA	1 cut(s)	728
AclWI	GGATC	9 cut(s)	866, 879, 1676, 1842, 1889, 2403, 2472, 2791, 3092
AcsI	RAATTY	8 cut(s)	62, 155, 733, 805, 1301, 2061, 2194, 2804
AcuI	CTGAAG	3 cut(s)	728, 1152, 2979
AdeI	CACNNNGTG	1 cut(s)	2299
AfaI	GTAC	6 cut(s)	974, 983, 1047, 1775, 2652, 3158
AfiI	CCNNNNNNNGG	9 cut(s)	125, 659, 767, 1214, 1939, 2299, 2324, 2645, 2820
AflII	CTTAAG	1 cut(s)	965
AhdI	GACNNNNNGTC	2 cut(s)	2678, 3022
AhlI	ACTAGT	1 cut(s)	2653
AjnI	CCWGG	7 cut(s)	563, 909, 984, 1445, 1472, 1758, 2108
AjuI	GAANNNNNNNTTGG	6 cut(s)	242, 274, 1538, 1570, 2510, 2542
AloI	GAACNNNNNNTCC	2 cut(s)	1913, 1945
Alw21I	GWGCWC	3 cut(s)	396, 438, 649
Alw26I	GTCTC	4 cut(s)	48, 1389, 1472, 3207
Alw44I	GTGCAC	2 cut(s)	392, 645
AlwI	GGATC	9 cut(s)	866, 879, 1676, 1842, 1889, 2403, 2472, 2791, 3092
Ama87I	CYCGRG	3 cut(s)	240, 833, 2245
Aor13HI	TCCGGA	1 cut(s)	728
AoxI	GGCC	2 cut(s)	1372, 2333
ApaLI	GTGCAC	2 cut(s)	392, 645
ApeKI	GCWGC	6 cut(s)	466, 939, 1442, 2169, 2358, 3137
ApoI	RAATTY	8 cut(s)	62, 155, 733, 805, 1301, 2061, 2194, 2804
Asp700I	GAANNNNTTC	4 cut(s)	1512, 1884, 2753, 2983
Asp718I	GGTACC	2 cut(s)	1773, 3156
AspA2I	CCTAGG	2 cut(s)	658, 766
AspLEI	GCGC	1 cut(s)	131
AspS9I	GGNCC	1 cut(s)	1088
AsuC2I	CCSGG	4 cut(s)	834, 835, 2246, 2247
AsuHPI	GGTGA	5 cut(s)	1002, 1304, 1418, 2141, 2776
AsuII	TTCGAA	1 cut(s)	2871
AvaI	CYCGRG	3 cut(s)	240, 833, 2245
AvaII	GGWCC	1 cut(s)	1088
AvrII	CCTAGG	2 cut(s)	658, 766
BaeGI	GKGCMC	4 cut(s)	396, 520, 649, 910
BamHI	GGATCC	1 cut(s)	871
BanI	GGYRCC	4 cut(s)	262, 515, 1773, 3156
BanII	GRGCYC	1 cut(s)	438
BarI	GAAGNNNNNNTAC	4 cut(s)	1360, 1392, 2952, 2984
BbsI	GAAGAC	2 cut(s)	716, 1038
Bbv12I	GWGCWC	3 cut(s)	396, 438, 649
BbvI	GCAGC	6 cut(s)	453, 926, 1454, 2181, 2370, 3149
BciT130I	CCWGG	7 cut(s)	565, 911, 986, 1447, 1474, 1760, 2110
BcnI	CCSGG	4 cut(s)	834, 835, 2246, 2247
BcoDI	GTCTC	4 cut(s)	48, 1389, 1472, 3207
BcuI	ACTAGT	1 cut(s)	2653
BfmI	CTRYAG	2 cut(s)	165, 1194
BfrI	CTTAAG	1 cut(s)	965
BfuAI	ACCTGC	1 cut(s)	1761
BglII	AGATCT	1 cut(s)	2081
BlnI	CCTAGG	2 cut(s)	658, 766
Bme18I	GGWCC	1 cut(s)	1088
BmeRI	GACNNNNNGTC	2 cut(s)	2678, 3022
BmeT110I	CYCGRG	3 cut(s)	240, 833, 2245
BmgT120I	GGNCC	1 cut(s)	1088
BmiI	GGNNCC	6 cut(s)	264, 517, 759, 873, 1775, 3158
BmrI	ACTGGG	1 cut(s)	3193
BmuI	ACTGGG	1 cut(s)	3193
BpiI	GAAGAC	2 cut(s)	716, 1038
BpmI	CTGGAG	3 cut(s)	30, 89, 102
Bpu10I	CCTNAGC	1 cut(s)	2353
Bpu14I	TTCGAA	1 cut(s)	2871
BpuEI	CTTGAG	1 cut(s)	452
BpuMI	CCSGG	4 cut(s)	834, 835, 2246, 2247
Bsa29I	ATCGAT	1 cut(s)	205
BsaAI	YACGTR	1 cut(s)	512
BsaI	GGTCTC	1 cut(s)	3207
BsaWI	WCCGGW	1 cut(s)	728
BsaXI	ACNNNNNCTCC	2 cut(s)	710, 740
Bsc4I	CCNNNNNNNGG	9 cut(s)	125, 659, 767, 1214, 1939, 2299, 2324, 2645, 2820
Bse118I	RCCGGY	1 cut(s)	2281
Bse1I	ACTGG	8 cut(s)	85, 505, 816, 883, 1403, 1923, 2650, 3188
Bse3DI	GCAATG	2 cut(s)	1872, 2147
BseAI	TCCGGA	1 cut(s)	728
BseBI	CCWGG	7 cut(s)	565, 911, 986, 1447, 1474, 1760, 2110
BseCI	ATCGAT	1 cut(s)	205
BseLI	CCNNNNNNNGG	9 cut(s)	125, 659, 767, 1214, 1939, 2299, 2324, 2645, 2820
BseMI	GCAATG	2 cut(s)	1872, 2147
BseMII	CTCAG	5 cut(s)	312, 1019, 2367, 2963, 3215
BseNI	ACTGG	8 cut(s)	85, 505, 816, 883, 1403, 1923, 2650, 3188
BseRI	GAGGAG	4 cut(s)	86, 338, 1244, 1249
BseSI	GKGCMC	4 cut(s)	396, 520, 649, 910
BseXI	GCAGC	6 cut(s)	453, 926, 1454, 2181, 2370, 3149
BseYI	CCCAGC	2 cut(s)	2443, 2923
BsgI	GTGCAG	2 cut(s)	1242, 1365
Bsh1236I	CGCG	3 cut(s)	1210, 2416, 2668
BshFI	GGCC	2 cut(s)	1374, 2335
BshNI	GGYRCC	4 cut(s)	262, 515, 1773, 3156
BshVI	ATCGAT	1 cut(s)	205
BsiHKAI	GWGCWC	3 cut(s)	396, 438, 649
BsiHKCI	CYCGRG	3 cut(s)	240, 833, 2245
BsiSI	CCGG	5 cut(s)	457, 729, 834, 2246, 2282
BslI	CCNNNNNNNGG	9 cut(s)	125, 659, 767, 1214, 1939, 2299, 2324, 2645, 2820
BsmAI	GTCTC	4 cut(s)	48, 1389, 1472, 3207
BsmI	GAATGC	2 cut(s)	1189, 2354
BsnI	GGCC	2 cut(s)	1374, 2335
Bso31I	GGTCTC	1 cut(s)	3207
BsoBI	CYCGRG	3 cut(s)	240, 833, 2245
Bsp119I	TTCGAA	1 cut(s)	2871
Bsp1286I	GDGCHC	5 cut(s)	396, 438, 520, 649, 910
Bsp13I	TCCGGA	1 cut(s)	728
Bsp1407I	TGTACA	1 cut(s)	1045
Bsp19I	CCATGG	2 cut(s)	1933, 3233
BspANI	GGCC	2 cut(s)	1374, 2335
BspCNI	CTCAG	5 cut(s)	313, 1018, 2366, 2964, 3216
BspDI	ATCGAT	1 cut(s)	205
BspEI	TCCGGA	1 cut(s)	728
BspFNI	CGCG	3 cut(s)	1210, 2416, 2668
BspLI	GGNNCC	6 cut(s)	264, 517, 759, 873, 1775, 3158
BspMAI	CTGCAG	1 cut(s)	169
BspMI	ACCTGC	1 cut(s)	1761
BspPI	GGATC	9 cut(s)	866, 879, 1676, 1842, 1889, 2403, 2472, 2791, 3092
BspQI	GCTCTTC	1 cut(s)	1474
BspT104I	TTCGAA	1 cut(s)	2871
BspT107I	GGYRCC	4 cut(s)	262, 515, 1773, 3156
BspTI	CTTAAG	1 cut(s)	965
BspTNI	GGTCTC	1 cut(s)	3207
BsrDI	GCAATG	2 cut(s)	1872, 2147
BsrFI	RCCGGY	1 cut(s)	2281
BsrGI	TGTACA	1 cut(s)	1045
BsrI	ACTGG	8 cut(s)	85, 505, 816, 883, 1403, 1923, 2650, 3188
BssAI	RCCGGY	1 cut(s)	2281
BssNAI	GTATAC	2 cut(s)	78, 1078
BssT1I	CCWWGG	6 cut(s)	658, 766, 930, 1822, 1933, 3233
Bst1107I	GTATAC	2 cut(s)	78, 1078
Bst2UI	CCWGG	7 cut(s)	565, 911, 986, 1447, 1474, 1760, 2110
Bst4CI	ACNGT	8 cut(s)	13, 37, 94, 699, 921, 1458, 2203, 2455
Bst6I	CTCTTC	3 cut(s)	619, 1221, 1474
BstAFI	CTTAAG	1 cut(s)	965
BstAPI	GCANNNNNTGC	2 cut(s)	173, 2552
BstAUI	TGTACA	1 cut(s)	1045
BstBAI	YACGTR	1 cut(s)	512
BstBI	TTCGAA	1 cut(s)	2871
BstC8I	GCNNGC	8 cut(s)	840, 991, 995, 1657, 1704, 1863, 2185, 2283
BstDEI	CTNAG	6 cut(s)	321, 1005, 1271, 2353, 2972, 3224
BstDSI	CCRYGG	5 cut(s)	1208, 1933, 2414, 2573, 3233
BstENI	CCTNNNNNAGG	1 cut(s)	2818
BstFNI	CGCG	3 cut(s)	1210, 2416, 2668
BstHHI	GCGC	1 cut(s)	131
BstMAI	GTCTC	4 cut(s)	48, 1389, 1472, 3207
BstNI	CCWGG	7 cut(s)	565, 911, 986, 1447, 1474, 1760, 2110
BstNSI	RCATGY	4 cut(s)	993, 1723, 2546, 3253
BstSFI	CTRYAG	2 cut(s)	165, 1194
BstSLI	GKGCMC	4 cut(s)	396, 520, 649, 910
BstUI	CGCG	3 cut(s)	1210, 2416, 2668
BstV1I	GCAGC	6 cut(s)	453, 926, 1454, 2181, 2370, 3149
BstV2I	GAAGAC	2 cut(s)	716, 1038
BstX2I	RGATCY	4 cut(s)	871, 1834, 2081, 3097
BstXI	CCANNNNNNTGG	2 cut(s)	512, 2116
BstYI	RGATCY	4 cut(s)	871, 1834, 2081, 3097
BstZ17I	GTATAC	2 cut(s)	78, 1078
Bsu15I	ATCGAT	1 cut(s)	205
BsuRI	GGCC	2 cut(s)	1374, 2335
BsuTUI	ATCGAT	1 cut(s)	205
BtgI	CCRYGG	5 cut(s)	1208, 1933, 2414, 2573, 3233
BtsI	GCAGTG	1 cut(s)	60
BtsIMutI	CAGTG	5 cut(s)	33, 60, 809, 1492, 1916
BveI	ACCTGC	1 cut(s)	1761
Cac8I	GCNNGC	8 cut(s)	840, 991, 995, 1657, 1704, 1863, 2185, 2283
CfoI	GCGC	1 cut(s)	131
Cfr10I	RCCGGY	1 cut(s)	2281
Cfr13I	GGNCC	1 cut(s)	1088
Cfr42I	CCGCGG	2 cut(s)	1211, 2417
Cfr9I	CCCGGG	2 cut(s)	833, 2245
ClaI	ATCGAT	1 cut(s)	205
Csp6I	GTAC	6 cut(s)	973, 982, 1046, 1774, 2651, 3157
CviQI	GTAC	6 cut(s)	973, 982, 1046, 1774, 2651, 3157
DdeI	CTNAG	6 cut(s)	321, 1005, 1271, 2353, 2972, 3224
DraI	TTTAAA	3 cut(s)	787, 1956, 2803
DraIII	CACNNNGTG	1 cut(s)	2299
DriI	GACNNNNNGTC	2 cut(s)	2678, 3022
Eam1104I	CTCTTC	3 cut(s)	619, 1221, 1474
Eam1105I	GACNNNNNGTC	2 cut(s)	2678, 3022
EarI	CTCTTC	3 cut(s)	619, 1221, 1474
EciI	GGCGGA	1 cut(s)	1624
Ecl136II	GAGCTC	1 cut(s)	436
Eco130I	CCWWGG	6 cut(s)	658, 766, 930, 1822, 1933, 3233
Eco147I	AGGCCT	1 cut(s)	2335
Eco24I	GRGCYC	1 cut(s)	438
Eco31I	GGTCTC	1 cut(s)	3207
Eco32I	GATATC	3 cut(s)	318, 1578, 2773
Eco47I	GGWCC	1 cut(s)	1088
Eco53kI	GAGCTC	1 cut(s)	436
Eco57I	CTGAAG	3 cut(s)	728, 1152, 2979
Eco88I	CYCGRG	3 cut(s)	240, 833, 2245
EcoICRI	GAGCTC	1 cut(s)	436
EcoNI	CCTNNNNNAGG	1 cut(s)	2818
EcoRI	GAATTC	1 cut(s)	155
EcoRII	CCWGG	7 cut(s)	563, 909, 984, 1445, 1472, 1758, 2108
EcoRV	GATATC	3 cut(s)	318, 1578, 2773
EcoT14I	CCWWGG	6 cut(s)	658, 766, 930, 1822, 1933, 3233
EcoT22I	ATGCAT	1 cut(s)	1191
EcoT38I	GRGCYC	1 cut(s)	438
ErhI	CCWWGG	6 cut(s)	658, 766, 930, 1822, 1933, 3233
FalI	AAGNNNNNCTT	2 cut(s)	242, 274
FblI	GTMKAC	3 cut(s)	77, 1077, 2671
FriOI	GRGCYC	1 cut(s)	438
GlaI	GCGC	1 cut(s)	130
GsaI	CCCAGC	2 cut(s)	2447, 2927
GsuI	CTGGAG	3 cut(s)	30, 89, 102
HaeIII	GGCC	2 cut(s)	1374, 2335
HapII	CCGG	5 cut(s)	457, 729, 834, 2246, 2282
HhaI	GCGC	1 cut(s)	131
Hin6I	GCGC	1 cut(s)	129
HinP1I	GCGC	1 cut(s)	129
HindIII	AAGCTT	2 cut(s)	428, 2750
HpaII	CCGG	5 cut(s)	457, 729, 834, 2246, 2282
HphI	GGTGA	5 cut(s)	1002, 1304, 1418, 2141, 2776
Hpy99I	CGWCG	1 cut(s)	1948
HpyAV	CCTTC	6 cut(s)	80, 1874, 2083, 2572, 2824, 3049
HpyCH4III	ACNGT	8 cut(s)	13, 37, 94, 699, 921, 1458, 2203, 2455
HpyCH4IV	ACGT	1 cut(s)	511
HpyF3I	CTNAG	6 cut(s)	321, 1005, 1271, 2353, 2972, 3224
HpySE526I	ACGT	1 cut(s)	511
HspAI	GCGC	1 cut(s)	129
Kpn2I	TCCGGA	1 cut(s)	728
KpnI	GGTACC	2 cut(s)	1777, 3160
KroI	GCCGGC	1 cut(s)	2281
KroNI	GCCGGC	1 cut(s)	2283
KspI	CCGCGG	2 cut(s)	1211, 2417
LguI	GCTCTTC	1 cut(s)	1474
LmnI	GCTCC	6 cut(s)	441, 628, 763, 1767, 2049, 2619
Lsp1109I	GCAGC	6 cut(s)	453, 926, 1454, 2181, 2370, 3149
MaeII	ACGT	1 cut(s)	511
MfeI	CAATTG	2 cut(s)	1331, 1799
MflI	RGATCY	4 cut(s)	871, 1834, 2081, 3097
MhlI	GDGCHC	5 cut(s)	396, 438, 520, 649, 910
MlyI	GAGTC	5 cut(s)	50, 233, 2504, 2738, 3032
MmeI	TCCRAC	3 cut(s)	1471, 1857, 2782
Mph1103I	ATGCAT	1 cut(s)	1191
MroI	TCCGGA	1 cut(s)	728
MroNI	GCCGGC	1 cut(s)	2281
MroXI	GAANNNNTTC	4 cut(s)	1512, 1884, 2753, 2983
MseI	TTAA	8 cut(s)	638, 786, 924, 966, 1422, 1955, 2802, 3030
MslI	CAYNNNNRTG	3 cut(s)	2343, 2622, 3151
MspA1I	CMGCKG	2 cut(s)	1210, 2416
MspCI	CTTAAG	1 cut(s)	965
MspI	CCGG	5 cut(s)	457, 729, 834, 2246, 2282
MunI	CAATTG	2 cut(s)	1331, 1799
Mva1269I	GAATGC	2 cut(s)	1189, 2354
MvaI	CCWGG	7 cut(s)	565, 911, 986, 1447, 1474, 1760, 2110
MvnI	CGCG	3 cut(s)	1210, 2416, 2668
NaeI	GCCGGC	1 cut(s)	2283
NciI	CCSGG	4 cut(s)	834, 835, 2246, 2247
NcoI	CCATGG	2 cut(s)	1933, 3233
NgoMIV	GCCGGC	1 cut(s)	2281
NlaIV	GGNNCC	6 cut(s)	264, 517, 759, 873, 1775, 3158
NmuCI	GTSAC	5 cut(s)	55, 292, 364, 1008, 2399
NsiI	ATGCAT	1 cut(s)	1191
NspI	RCATGY	4 cut(s)	993, 1723, 2546, 3253
NspV	TTCGAA	1 cut(s)	2871
PaeI	GCATGC	1 cut(s)	993
PaeR7I	CTCGAG	1 cut(s)	240
PceI	AGGCCT	1 cut(s)	2335
PciSI	GCTCTTC	1 cut(s)	1474
PcsI	WCGNNNNNNNCGW	1 cut(s)	1117
PctI	GAATGC	2 cut(s)	1189, 2354
PdiI	GCCGGC	1 cut(s)	2283
PdmI	GAANNNNTTC	4 cut(s)	1512, 1884, 2753, 2983
PfeI	GAWTC	7 cut(s)	1000, 1870, 1885, 2407, 2633, 2789, 2868
PflMI	CCANNNNNTGG	2 cut(s)	125, 2299
PleI	GAGTC	5 cut(s)	49, 232, 2503, 2737, 3031
PpsI	GAGTC	5 cut(s)	49, 232, 2503, 2737, 3031
Ppu21I	YACGTR	1 cut(s)	512
PsiI	TTATAA	2 cut(s)	531, 1977
Psp124BI	GAGCTC	1 cut(s)	438
Psp6I	CCWGG	7 cut(s)	563, 909, 984, 1445, 1472, 1758, 2108
PspFI	CCCAGC	2 cut(s)	2443, 2923
PspGI	CCWGG	7 cut(s)	563, 909, 984, 1445, 1472, 1758, 2108
PspN4I	GGNNCC	6 cut(s)	264, 517, 759, 873, 1775, 3158
PspPI	GGNCC	1 cut(s)	1088
PsrI	GAACNNNNNNTAC	2 cut(s)	1038, 1070
PstI	CTGCAG	1 cut(s)	169
PsuI	RGATCY	4 cut(s)	871, 1834, 2081, 3097
RsaI	GTAC	6 cut(s)	974, 983, 1047, 1775, 2652, 3158
RsaNI	GTAC	6 cut(s)	973, 982, 1046, 1774, 2651, 3157
RseI	CAYNNNNRTG	3 cut(s)	2343, 2622, 3151
SacI	GAGCTC	1 cut(s)	438
SacII	CCGCGG	2 cut(s)	1211, 2417
SapI	GCTCTTC	1 cut(s)	1474
SaqAI	TTAA	8 cut(s)	638, 786, 924, 966, 1422, 1955, 2802, 3030
Sau96I	GGNCC	1 cut(s)	1088
SchI	GAGTC	5 cut(s)	50, 233, 2504, 2738, 3032
SduI	GDGCHC	5 cut(s)	396, 438, 520, 649, 910
SfcI	CTRYAG	2 cut(s)	165, 1194
Sfr274I	CTCGAG	1 cut(s)	240
Sfr303I	CCGCGG	2 cut(s)	1211, 2417
SfuI	TTCGAA	1 cut(s)	2871
SgrBI	CCGCGG	2 cut(s)	1211, 2417
SinI	GGWCC	1 cut(s)	1088
SlaI	CTCGAG	1 cut(s)	240
SmaI	CCCGGG	2 cut(s)	835, 2247
SmiMI	CAYNNNNRTG	3 cut(s)	2343, 2622, 3151
SmlI	CTYRAG	3 cut(s)	240, 431, 965
SmoI	CTYRAG	3 cut(s)	240, 431, 965
SpeI	ACTAGT	1 cut(s)	2653
SphI	GCATGC	1 cut(s)	993
SseBI	AGGCCT	1 cut(s)	2335
SspI	AATATT	1 cut(s)	1550
SstI	GAGCTC	1 cut(s)	438
StuI	AGGCCT	1 cut(s)	2335
StyI	CCWWGG	6 cut(s)	658, 766, 930, 1822, 1933, 3233
TaaI	ACNGT	8 cut(s)	13, 37, 94, 699, 921, 1458, 2203, 2455
TaiI	ACGT	1 cut(s)	514
TaqI	TCGA	7 cut(s)	205, 241, 571, 2163, 2775, 2871, 3246
TatI	WGTACW	2 cut(s)	1045, 2650
TauI	GCSGC	4 cut(s)	1374, 1433, 2419, 2668
TfiI	GAWTC	7 cut(s)	1000, 1870, 1885, 2407, 2633, 2789, 2868
Tru1I	TTAA	8 cut(s)	638, 786, 924, 966, 1422, 1955, 2802, 3030
Tru9I	TTAA	8 cut(s)	638, 786, 924, 966, 1422, 1955, 2802, 3030
TscAI	CASTG	5 cut(s)	40, 60, 816, 1492, 1923
TseFI	GTSAC	5 cut(s)	55, 292, 364, 1008, 2399
TseI	GCWGC	6 cut(s)	466, 939, 1442, 2169, 2358, 3137
Tsp45I	GTSAC	5 cut(s)	55, 292, 364, 1008, 2399
TspGWI	ACGGA	2 cut(s)	2062, 2590
TspMI	CCCGGG	2 cut(s)	833, 2245
TspRI	CASTG	5 cut(s)	40, 60, 816, 1492, 1923
Van91I	CCANNNNNTGG	2 cut(s)	125, 2299
Vha464I	CTTAAG	1 cut(s)	965
VneI	GTGCAC	2 cut(s)	392, 645
VpaK11BI	GGWCC	1 cut(s)	1088
XagI	CCTNNNNNAGG	1 cut(s)	2818
XapI	RAATTY	8 cut(s)	62, 155, 733, 805, 1301, 2061, 2194, 2804
XbaI	TCTAGA	1 cut(s)	2098
XceI	RCATGY	4 cut(s)	993, 1723, 2546, 3253
XhoI	CTCGAG	1 cut(s)	240
XmaI	CCCGGG	2 cut(s)	833, 2245
XmaJI	CCTAGG	2 cut(s)	658, 766
XmiI	GTMKAC	3 cut(s)	77, 1077, 2671
XmnI	GAANNNNTTC	4 cut(s)	1512, 1884, 2753, 2983
Zsp2I	ATGCAT	1 cut(s)	1191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.