Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0002442

Physical Location & Seq

Genomic Coordinates Forward (+)

20761678 .. 20773870

Gene Structure 12193 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG160100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 201 bp

ATGGACTGCAGGTTTGTAGAACTTCTGTGGCAACTTTCTTTGCATGCTTTGCGAGAGGTTCATAGGCGGACATTTGCAGCTGATGTAGCTTCTAACCCTCTTCCCGCATCATTGACGGATGTAGCCTTTTCACATGCAGACACTTTACTTCCTGTTACAAAGGTTTTTCTCAAGAGATCATTGATAGTCTTGAGGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005856 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0008017 GO:0008092 GO:0008150 GO:0009524 GO:0009553 GO:0009555 GO:0009561 GO:0009987 GO:0015630 GO:0015631 GO:0016043 GO:0032501 GO:0032502 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0048229 GO:0048856 GO:0051011 GO:0055046 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAUS6_N

Protein Analysis

66

Amino Acids

7.5

Weight (kDa)

8.02

Isoelectric Point (pI)

42.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002442)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40740
fragaria_vesca	FvH4_6g52640 FvH4_6g52640 FvH4_6g52640 FvH4_6g52640 FvH4_6g52640 FvH4_6g52640
malus_domestica	MD09G1017400.v1.1 MD17G1018200.v1.1
prunus_persica	Prupe.3G299500_v2.0.a1 Prupe.3G299500_v2.0.a1
pyrus_communis	pycom111g01430 pycom17g01460 pycom17g01470
rosa_chinensis	RchiOBHm_Chr2g0096321 RchiOBHm_Chr2g0166591 RchiOBHm_Chr2g0174171 RchiOBHm_Chr5g0045391 RchiOBHm_Chr6g0248711
rosa_laevigata	RLG00000022253
rosa_multiflora	Rmu_sc0002045.1_g000024 Rmu_ssc0000100.1_g000024 Rmu_ssc0000198.1_g000004
rosa_roxburghii	Rroxscaffold_2G00078390 Rroxscaffold_3G00231180
rosa_rugosa	Rorug02G0575600 Rorug02G0575600
rosa_samantha	Rh2AG655000 Rh2BG666200 Rh2CG630400 Rh2DG680800 Rh4CG097900 Rh5BG312100 Rh5BG536100 Rh5BG536300 Rh5CG559500 Rh5DG322800 Rh6CG160100
rosa_wichuraiana	Rw2G053760 Rw6G003620 Rw7G025810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	67, 105
AluBI	AGCT	2 cut(s)	80, 89
AluI	AGCT	2 cut(s)	80, 89
ApeKI	GCWGC	1 cut(s)	77
ArsI	GACNNNNNNTTYG	1 cut(s)	28
BbvI	GCAGC	1 cut(s)	89
BfmI	CTRYAG	1 cut(s)	7
BisI	GCNGC	1 cut(s)	78
BlsI	GCNGC	1 cut(s)	79
BmsI	GCATC	1 cut(s)	116
BpuEI	CTTGAG	1 cut(s)	155
BseGI	GGATG	1 cut(s)	124
BseXI	GCAGC	1 cut(s)	89
Bsp143I	GATC	1 cut(s)	176
BspACI	CCGC	2 cut(s)	67, 105
BspMAI	CTGCAG	1 cut(s)	11
BssMI	GATC	1 cut(s)	176
Bst6I	CTCTTC	1 cut(s)	105
BstAPI	GCANNNNNTGC	1 cut(s)	49
BstC8I	GCNNGC	1 cut(s)	45
BstF5I	GGATG	1 cut(s)	124
BstKTI	GATC	1 cut(s)	179
BstMBI	GATC	1 cut(s)	176
BstMWI	GCNNNNNNNGC	2 cut(s)	49, 86
BstNSI	RCATGY	2 cut(s)	47, 137
BstSFI	CTRYAG	1 cut(s)	7
BstV1I	GCAGC	1 cut(s)	89
BtsCI	GGATG	1 cut(s)	124
Cac8I	GCNNGC	1 cut(s)	45
CviAII	CATG	2 cut(s)	44, 134
CviJI	RGCY	3 cut(s)	80, 89, 125
CviKI_1	RGCY	3 cut(s)	80, 89, 125
DpnI	GATC	1 cut(s)	178
DpnII	GATC	1 cut(s)	176
Eam1104I	CTCTTC	1 cut(s)	105
EarI	CTCTTC	1 cut(s)	105
EciI	GGCGGA	1 cut(s)	82
FaeI	CATG	2 cut(s)	47, 137
FaiI	YATR	3 cut(s)	45, 63, 135
FatI	CATG	2 cut(s)	43, 133
FauI	CCCGC	1 cut(s)	112
Fnu4HI	GCNGC	1 cut(s)	78
FokI	GGATG	1 cut(s)	131
Fsp4HI	GCNGC	1 cut(s)	78
GluI	GCNGC	1 cut(s)	78
Hin1II	CATG	2 cut(s)	47, 137
Hpy188III	TCNNGA	2 cut(s)	172, 190
HpyCH4V	TGCA	4 cut(s)	9, 43, 77, 137
HpyF10VI	GCNNNNNNNGC	2 cut(s)	49, 86
Hsp92II	CATG	2 cut(s)	47, 137
Kzo9I	GATC	1 cut(s)	176
LpnPI	CCDG	1 cut(s)	165
Lsp1109I	GCAGC	1 cut(s)	89
LweI	GCATC	1 cut(s)	116
MaeIII	GTNAC	1 cut(s)	154
MalI	GATC	1 cut(s)	178
MboI	GATC	1 cut(s)	176
MboII	GAAGA	1 cut(s)	92
MnlI	CCTC	3 cut(s)	49, 108, 186
MspA1I	CMGCKG	1 cut(s)	80
MwoI	GCNNNNNNNGC	2 cut(s)	49, 86
NdeII	GATC	1 cut(s)	176
NlaIII	CATG	2 cut(s)	47, 137
NspI	RCATGY	2 cut(s)	47, 137
PaeI	GCATGC	1 cut(s)	47
PkrI	GCNGC	1 cut(s)	79
PstI	CTGCAG	1 cut(s)	11
PvuII	CAGCTG	1 cut(s)	80
SatI	GCNGC	1 cut(s)	78
Sau3AI	GATC	1 cut(s)	176
SetI	ASST	5 cut(s)	14, 60, 82, 91, 165
SfaNI	GCATC	1 cut(s)	116
SfcI	CTRYAG	1 cut(s)	7
SgeI	CNNG	7 cut(s)	22, 56, 65, 116, 146, 164, 184
SmlI	CTYRAG	2 cut(s)	170, 190
SmoI	CTYRAG	2 cut(s)	170, 190
SphI	GCATGC	1 cut(s)	47
SsiI	CCGC	2 cut(s)	67, 105
TseI	GCWGC	1 cut(s)	77
TspDTI	ATGAA	1 cut(s)	50
TspGWI	ACGGA	1 cut(s)	131
XceI	RCATGY	2 cut(s)	47, 137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.