Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002442

Physical Location & Seq

Genomic Coordinates Reverse (-)

9093555 .. 9094230

Gene Structure 676 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ47127

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGAAGAATACTTTAGATCCATCCCATTCACAAGTAAATGATGAAACTCTTCATCGAGCAGATGAGAGAAGTGGAAGAGTCCACCCAACTGTTGACGTGGCAGAAATTATCAGGCGTTGGACACATGCTTTACAGCGTATTCATAAACAGTCACTTCATATGGCAAAAGCTAATGAGGGAGAGGGTCCAGAAATTCTAAGAAGTGCGCATGAAGGCAGTTCAAGTGGTCATGCCGAGTCATTAGCTGCAACACTAGCTGAACATCAGCAGCACTTGGTTAGCTTTCAGGTAAGCTTATGCTTTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005856 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0008017 GO:0008092 GO:0008150 GO:0009524 GO:0009553 GO:0009555 GO:0009561 GO:0009987 GO:0015630 GO:0015631 GO:0016043 GO:0032501 GO:0032502 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0048229 GO:0048856 GO:0051011 GO:0055046 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAUS6_N

Protein Analysis

102

Amino Acids

11.38

Weight (kDa)

6.34

Isoelectric Point (pI)

56.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0002442)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40740
fragaria_vesca	FvH4_6g52640 FvH4_6g52640 FvH4_6g52640 FvH4_6g52640 FvH4_6g52640 FvH4_6g52640
malus_domestica	MD09G1017400.v1.1 MD17G1018200.v1.1
prunus_persica	Prupe.3G299500_v2.0.a1 Prupe.3G299500_v2.0.a1
pyrus_communis	pycom111g01430 pycom17g01460 pycom17g01470
rosa_chinensis	RchiOBHm_Chr2g0096321 RchiOBHm_Chr2g0166591 RchiOBHm_Chr2g0174171 RchiOBHm_Chr5g0045391 RchiOBHm_Chr6g0248711
rosa_laevigata	RLG00000022253
rosa_multiflora	Rmu_sc0002045.1_g000024 Rmu_ssc0000100.1_g000024 Rmu_ssc0000198.1_g000004
rosa_roxburghii	Rroxscaffold_2G00078390 Rroxscaffold_3G00231180
rosa_rugosa	Rorug02G0575600 Rorug02G0575600
rosa_samantha	Rh2AG655000 Rh2BG666200 Rh2CG630400 Rh2DG680800 Rh4CG097900 Rh5BG312100 Rh5BG536100 Rh5BG536300 Rh5CG559500 Rh5DG322800 Rh6CG160100
rosa_wichuraiana	Rw2G053760 Rw6G003620 Rw7G025810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	207
AclWI	GGATC	1 cut(s)	11
AcsI	RAATTY	1 cut(s)	192
AgsI	TTSAA	1 cut(s)	222
AjiI	CACGTC	1 cut(s)	97
AluBI	AGCT	5 cut(s)	170, 245, 257, 282, 294
AluI	AGCT	5 cut(s)	170, 245, 257, 282, 294
AlwI	GGATC	1 cut(s)	11
ApeKI	GCWGC	2 cut(s)	245, 268
ApoI	RAATTY	1 cut(s)	192
Asp700I	GAANNNNTTC	1 cut(s)	48
AspLEI	GCGC	1 cut(s)	208
AspS9I	GGNCC	1 cut(s)	185
AvaII	GGWCC	1 cut(s)	185
BbvI	GCAGC	2 cut(s)	232, 280
BccI	CCATC	1 cut(s)	28
BfaI	CTAG	1 cut(s)	254
BisI	GCNGC	2 cut(s)	246, 269
BlsI	GCNGC	2 cut(s)	247, 270
Bme18I	GGWCC	1 cut(s)	185
BmgBI	CACGTC	1 cut(s)	97
BmgT120I	GGNCC	1 cut(s)	185
BmiI	GGNNCC	1 cut(s)	186
BseGI	GGATG	1 cut(s)	20
BseXI	GCAGC	2 cut(s)	232, 280
Bsp143I	GATC	1 cut(s)	16
BspLI	GGNNCC	1 cut(s)	186
BspPI	GGATC	1 cut(s)	11
BssMI	GATC	1 cut(s)	16
Bst4CI	ACNGT	2 cut(s)	91, 150
Bst6I	CTCTTC	2 cut(s)	54, 70
BstDEI	CTNAG	1 cut(s)	197
BstF5I	GGATG	1 cut(s)	20
BstHHI	GCGC	1 cut(s)	208
BstKTI	GATC	1 cut(s)	19
BstMBI	GATC	1 cut(s)	16
BstMWI	GCNNNNNNNGC	1 cut(s)	254
BstNSI	RCATGY	1 cut(s)	128
BstV1I	GCAGC	2 cut(s)	232, 280
BstX2I	RGATCY	1 cut(s)	16
BstYI	RGATCY	1 cut(s)	16
BtrI	CACGTC	1 cut(s)	97
BtsCI	GGATG	1 cut(s)	20
CfoI	GCGC	1 cut(s)	208
Cfr13I	GGNCC	1 cut(s)	185
CviAII	CATG	3 cut(s)	125, 209, 230
CviJI	RGCY	5 cut(s)	170, 245, 257, 282, 294
CviKI_1	RGCY	5 cut(s)	170, 245, 257, 282, 294
DdeI	CTNAG	1 cut(s)	197
DpnI	GATC	1 cut(s)	18
DpnII	GATC	1 cut(s)	16
Eam1104I	CTCTTC	2 cut(s)	54, 70
EarI	CTCTTC	2 cut(s)	54, 70
Eco47I	GGWCC	1 cut(s)	185
FaeI	CATG	3 cut(s)	128, 212, 233
FaiI	YATR	7 cut(s)	126, 144, 159, 161, 210, 231, 298
FatI	CATG	3 cut(s)	124, 208, 229
FauNDI	CATATG	1 cut(s)	159
Fnu4HI	GCNGC	2 cut(s)	246, 269
FokI	GGATG	1 cut(s)	7
Fsp4HI	GCNGC	2 cut(s)	246, 269
FspAI	RTGCGCAY	1 cut(s)	207
FspBI	CTAG	1 cut(s)	254
FspI	TGCGCA	1 cut(s)	207
GlaI	GCGC	1 cut(s)	207
GluI	GCNGC	2 cut(s)	246, 269
HhaI	GCGC	1 cut(s)	208
Hin1II	CATG	3 cut(s)	128, 212, 233
Hin6I	GCGC	1 cut(s)	206
HinP1I	GCGC	1 cut(s)	206
HincII	GTYRAC	1 cut(s)	94
HindII	GTYRAC	1 cut(s)	94
HindIII	AAGCTT	1 cut(s)	292
HinfI	GANTC	2 cut(s)	78, 236
Hpy166II	GTNNAC	2 cut(s)	82, 94
Hpy188III	TCNNGA	1 cut(s)	188
Hpy8I	GTNNAC	2 cut(s)	82, 94
HpyAV	CCTTC	1 cut(s)	206
HpyCH4III	ACNGT	2 cut(s)	91, 150
HpyCH4IV	ACGT	1 cut(s)	96
HpyCH4V	TGCA	1 cut(s)	248
HpyF10VI	GCNNNNNNNGC	1 cut(s)	254
HpyF3I	CTNAG	1 cut(s)	197
HpySE526I	ACGT	1 cut(s)	96
Hsp92II	CATG	3 cut(s)	128, 212, 233
HspAI	GCGC	1 cut(s)	206
Kzo9I	GATC	1 cut(s)	16
LpnPI	CCDG	3 cut(s)	97, 201, 272
Lsp1109I	GCAGC	2 cut(s)	232, 280
MaeI	CTAG	1 cut(s)	254
MaeII	ACGT	1 cut(s)	96
MaeIII	GTNAC	1 cut(s)	150
MalI	GATC	1 cut(s)	18
MboI	GATC	1 cut(s)	16
MboII	GAAGA	3 cut(s)	16, 41, 87
MflI	RGATCY	1 cut(s)	16
MluCI	AATT	2 cut(s)	105, 192
MlyI	GAGTC	2 cut(s)	87, 245
MmeI	TCCRAC	1 cut(s)	98
MnlI	CCTC	2 cut(s)	169, 175
MroXI	GAANNNNTTC	1 cut(s)	48
MseI	TTAA	1 cut(s)	303
MwoI	GCNNNNNNNGC	1 cut(s)	254
NdeI	CATATG	1 cut(s)	159
NdeII	GATC	1 cut(s)	16
NlaIII	CATG	3 cut(s)	128, 212, 233
NlaIV	GGNNCC	1 cut(s)	186
NmeAIII	GCCGAG	1 cut(s)	259
NmuCI	GTSAC	1 cut(s)	150
NsbI	TGCGCA	1 cut(s)	207
NspI	RCATGY	1 cut(s)	128
PdmI	GAANNNNTTC	1 cut(s)	48
PkrI	GCNGC	2 cut(s)	247, 270
PleI	GAGTC	2 cut(s)	86, 244
PpsI	GAGTC	2 cut(s)	86, 244
PspN4I	GGNNCC	1 cut(s)	186
PspPI	GGNCC	1 cut(s)	185
PsuI	RGATCY	1 cut(s)	16
SaqAI	TTAA	1 cut(s)	303
SatI	GCNGC	2 cut(s)	246, 269
Sau3AI	GATC	1 cut(s)	16
Sau96I	GGNCC	1 cut(s)	185
SchI	GAGTC	2 cut(s)	87, 245
SetI	ASST	7 cut(s)	99, 172, 247, 259, 284, 291, 296
SinI	GGWCC	1 cut(s)	185
Sse9I	AATT	2 cut(s)	105, 192
SspMI	CTAG	1 cut(s)	254
TaaI	ACNGT	2 cut(s)	91, 150
TaiI	ACGT	1 cut(s)	99
TaqI	TCGA	1 cut(s)	55
TasI	AATT	2 cut(s)	105, 192
Tru1I	TTAA	1 cut(s)	303
Tru9I	TTAA	1 cut(s)	303
TseFI	GTSAC	1 cut(s)	150
TseI	GCWGC	2 cut(s)	245, 268
Tsp45I	GTSAC	1 cut(s)	150
TspDTI	ATGAA	6 cut(s)	17, 41, 57, 131, 146, 225
VpaK11BI	GGWCC	1 cut(s)	185
XapI	RAATTY	1 cut(s)	192
XceI	RCATGY	1 cut(s)	128
XmnI	GAANNNNTTC	1 cut(s)	48
XspI	CTAG	1 cut(s)	254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.