Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0002442

Physical Location & Seq

Genomic Coordinates Forward (+)

16154919 .. 16160486

Gene Structure 5568 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00231180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGTTCATTTGCTTAATGGACTGCAGGTTTGTAGAACTTCGTGGCAACTTTCTTTGCATGCTTTGCGAGAGGTTCATAGGCGGACATTTGCAGCCGATGTAGCTTCTAACCCTCTTCCCGCATCATTGACGGATGTGGCCTTTTCACATGCAGCCACTTTACTTCCTGTTACAAAGGCTAGAATAGCACTTGAAAGAAGGAAGTTTCTTAAGAATGCGGAAACAAAGCAGAGACAGGCCATAAAATCTTTCTCCCACCTCTTCGATCCGAAATCGAGTAAGACCGATTTGGAAATCGGTGTTCATAAACACCACGAGCATTGGGAAACCCCAAATCTTGCAACGCCATCACGGCCGAGGCCGATCCTTCACCGACACAGAGAGCCTTATCACCGTTCAAAAGCTGCTCGCCCATTAGCTCTCGACCACACCGACGGTCAAGTTCACGACTTGCTTGCACCGCGCCAAATCGAAAGTACCCCAAATGGGATTCGAAACCAGGTCCGAAAGATGAACTTGCCATGGAACAACCATGAGAGACTTGTGGCCTCGTGTGGTGCCTCTCGAATCTTGGGGGCTCGATTCTTGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005856 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0008017 GO:0008092 GO:0008150 GO:0009524 GO:0009553 GO:0009555 GO:0009561 GO:0009987 GO:0015630 GO:0015631 GO:0016043 GO:0032501 GO:0032502 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0048229 GO:0048856 GO:0051011 GO:0055046 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAUS6_N

Protein Analysis

197

Amino Acids

22.39

Weight (kDa)

10.86

Isoelectric Point (pI)

44.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002442)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40740
fragaria_vesca	FvH4_6g52640 FvH4_6g52640 FvH4_6g52640 FvH4_6g52640 FvH4_6g52640 FvH4_6g52640
malus_domestica	MD09G1017400.v1.1 MD17G1018200.v1.1
prunus_persica	Prupe.3G299500_v2.0.a1 Prupe.3G299500_v2.0.a1
pyrus_communis	pycom111g01430 pycom17g01460 pycom17g01470
rosa_chinensis	RchiOBHm_Chr2g0096321 RchiOBHm_Chr2g0166591 RchiOBHm_Chr2g0174171 RchiOBHm_Chr5g0045391 RchiOBHm_Chr6g0248711
rosa_laevigata	RLG00000022253
rosa_multiflora	Rmu_sc0002045.1_g000024 Rmu_ssc0000100.1_g000024 Rmu_ssc0000198.1_g000004
rosa_roxburghii	Rroxscaffold_2G00078390 Rroxscaffold_3G00231180
rosa_rugosa	Rorug02G0575600 Rorug02G0575600
rosa_samantha	Rh2AG655000 Rh2BG666200 Rh2CG630400 Rh2DG680800 Rh4CG097900 Rh5BG312100 Rh5BG536100 Rh5BG536300 Rh5CG559500 Rh5DG322800 Rh6CG160100
rosa_wichuraiana	Rw2G053760 Rw6G003620 Rw7G025810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	16
AccB1I	GGYRCC	1 cut(s)	557
AccII	CGCG	1 cut(s)	463
AciI	CCGC	4 cut(s)	82, 120, 218, 461
AclWI	GGATC	2 cut(s)	260, 358
AcoI	YGGCCR	1 cut(s)	353
AfaI	GTAC	1 cut(s)	478
AfiI	CCNNNNNNNGG	1 cut(s)	486
AflII	CTTAAG	1 cut(s)	209
AgsI	TTSAA	2 cut(s)	194, 399
AjnI	CCWGG	1 cut(s)	498
AluBI	AGCT	4 cut(s)	104, 404, 419, 591
AluI	AGCT	4 cut(s)	104, 404, 419, 591
Alw26I	GTCTC	2 cut(s)	226, 532
AlwI	GGATC	2 cut(s)	260, 358
AoxI	GGCC	5 cut(s)	138, 237, 353, 359, 546
ApeKI	GCWGC	3 cut(s)	92, 152, 404
ArsI	GACNNNNNNTTYG	2 cut(s)	12, 44
AspLEI	GCGC	1 cut(s)	465
AspS9I	GGNCC	1 cut(s)	502
AsuHPI	GGTGA	2 cut(s)	362, 383
AsuII	TTCGAA	1 cut(s)	493
AvaII	GGWCC	1 cut(s)	502
BanI	GGYRCC	1 cut(s)	557
BanII	GRGCYC	1 cut(s)	580
BauI	CACGAG	2 cut(s)	314, 550
BbvI	GCAGC	3 cut(s)	104, 164, 391
BccI	CCATC	1 cut(s)	355
BceAI	ACGGC	1 cut(s)	368
BcgI	CGANNNNNNTGC	2 cut(s)	437, 471
BciT130I	CCWGG	1 cut(s)	500
BcoDI	GTCTC	2 cut(s)	226, 532
BfaI	CTAG	1 cut(s)	180
BfmI	CTRYAG	1 cut(s)	23
BfrI	CTTAAG	1 cut(s)	209
BfuAI	ACCTGC	1 cut(s)	16
BglI	GCCNNNNNGGC	1 cut(s)	352
BisI	GCNGC	3 cut(s)	93, 153, 405
BlsI	GCNGC	3 cut(s)	94, 154, 406
Bme1390I	CCNGG	1 cut(s)	500
Bme18I	GGWCC	1 cut(s)	502
BmgT120I	GGNCC	1 cut(s)	502
BmiI	GGNNCC	1 cut(s)	559
BmrFI	CCNGG	1 cut(s)	500
BmsI	GCATC	1 cut(s)	131
Bpu14I	TTCGAA	1 cut(s)	493
BsaJI	CCNNGG	2 cut(s)	356, 521
Bsc4I	CCNNNNNNNGG	1 cut(s)	486
BseBI	CCWGG	1 cut(s)	500
BseDI	CCNNGG	2 cut(s)	356, 521
BseGI	GGATG	1 cut(s)	139
BseLI	CCNNNNNNNGG	1 cut(s)	486
BseX3I	CGGCCG	1 cut(s)	353
BseXI	GCAGC	3 cut(s)	104, 164, 391
Bsh1236I	CGCG	1 cut(s)	463
Bsh1285I	CGRYCG	1 cut(s)	356
BshFI	GGCC	5 cut(s)	140, 239, 355, 361, 548
BshNI	GGYRCC	1 cut(s)	557
BsiEI	CGRYCG	1 cut(s)	356
BslI	CCNNNNNNNGG	1 cut(s)	486
BsmAI	GTCTC	2 cut(s)	226, 532
BsmI	GAATGC	1 cut(s)	220
BsnI	GGCC	5 cut(s)	140, 239, 355, 361, 548
Bsp119I	TTCGAA	1 cut(s)	493
Bsp1286I	GDGCHC	1 cut(s)	580
Bsp143I	GATC	2 cut(s)	265, 363
Bsp19I	CCATGG	1 cut(s)	521
BspACI	CCGC	4 cut(s)	82, 120, 218, 461
BspANI	GGCC	5 cut(s)	140, 239, 355, 361, 548
BspFNI	CGCG	1 cut(s)	463
BspLI	GGNNCC	1 cut(s)	559
BspMAI	CTGCAG	1 cut(s)	27
BspMI	ACCTGC	1 cut(s)	16
BspPI	GGATC	2 cut(s)	260, 358
BspT104I	TTCGAA	1 cut(s)	493
BspT107I	GGYRCC	1 cut(s)	557
BspTI	CTTAAG	1 cut(s)	209
BssECI	CCNNGG	2 cut(s)	356, 521
BssMI	GATC	2 cut(s)	265, 363
BssSI	CACGAG	2 cut(s)	314, 550
BssT1I	CCWWGG	1 cut(s)	521
Bst2BI	CACGAG	2 cut(s)	314, 550
Bst2UI	CCWGG	1 cut(s)	500
Bst4CI	ACNGT	2 cut(s)	395, 437
Bst6I	CTCTTC	2 cut(s)	120, 266
BstAFI	CTTAAG	1 cut(s)	209
BstAPI	GCANNNNNTGC	1 cut(s)	64
BstBI	TTCGAA	1 cut(s)	493
BstC8I	GCNNGC	3 cut(s)	60, 409, 456
BstDSI	CCRYGG	1 cut(s)	521
BstF5I	GGATG	1 cut(s)	139
BstFNI	CGCG	1 cut(s)	463
BstHHI	GCGC	1 cut(s)	465
BstKTI	GATC	2 cut(s)	268, 366
BstMAI	GTCTC	2 cut(s)	226, 532
BstMBI	GATC	2 cut(s)	265, 363
BstMCI	CGRYCG	1 cut(s)	356
BstMWI	GCNNNNNNNGC	5 cut(s)	64, 101, 185, 352, 460
BstNI	CCWGG	1 cut(s)	500
BstNSI	RCATGY	2 cut(s)	62, 152
BstSCI	CCNGG	1 cut(s)	498
BstSFI	CTRYAG	1 cut(s)	23
BstUI	CGCG	1 cut(s)	463
BstV1I	GCAGC	3 cut(s)	104, 164, 391
BstZI	CGGCCG	1 cut(s)	353
BsuRI	GGCC	5 cut(s)	140, 239, 355, 361, 548
BtgI	CCRYGG	1 cut(s)	521
BtsCI	GGATG	1 cut(s)	139
BveI	ACCTGC	1 cut(s)	16
Cac8I	GCNNGC	3 cut(s)	60, 409, 456
CfoI	GCGC	1 cut(s)	465
Cfr13I	GGNCC	1 cut(s)	502
CsiI	ACCWGGT	1 cut(s)	498
Csp6I	GTAC	1 cut(s)	477
CspCI	CAANNNNNGTGG	2 cut(s)	302, 337
CviAII	CATG	4 cut(s)	59, 149, 522, 533
CviQI	GTAC	1 cut(s)	477
DpnI	GATC	2 cut(s)	267, 365
DpnII	GATC	2 cut(s)	265, 363
EaeI	YGGCCR	1 cut(s)	353
EagI	CGGCCG	1 cut(s)	353
Eam1104I	CTCTTC	2 cut(s)	120, 266
EarI	CTCTTC	2 cut(s)	120, 266
EciI	GGCGGA	1 cut(s)	97
EclXI	CGGCCG	1 cut(s)	353
Eco130I	CCWWGG	1 cut(s)	521
Eco24I	GRGCYC	1 cut(s)	580
Eco47I	GGWCC	1 cut(s)	502
Eco52I	CGGCCG	1 cut(s)	353
EcoRII	CCWGG	1 cut(s)	498
EcoT14I	CCWWGG	1 cut(s)	521
EcoT38I	GRGCYC	1 cut(s)	580
ErhI	CCWWGG	1 cut(s)	521
FaeI	CATG	4 cut(s)	62, 152, 525, 536
FaiI	YATR	7 cut(s)	60, 78, 150, 242, 306, 523, 534
FalI	AAGNNNNNCTT	2 cut(s)	500, 532
FatI	CATG	4 cut(s)	58, 148, 521, 532
FauI	CCCGC	1 cut(s)	127
Fnu4HI	GCNGC	3 cut(s)	93, 153, 405
FokI	GGATG	1 cut(s)	146
FriOI	GRGCYC	1 cut(s)	580
Fsp4HI	GCNGC	3 cut(s)	93, 153, 405
FspBI	CTAG	1 cut(s)	180
GlaI	GCGC	1 cut(s)	464
GluI	GCNGC	3 cut(s)	93, 153, 405
HaeIII	GGCC	5 cut(s)	140, 239, 355, 361, 548
HhaI	GCGC	1 cut(s)	465
Hin1II	CATG	4 cut(s)	62, 152, 525, 536
Hin6I	GCGC	1 cut(s)	463
HinP1I	GCGC	1 cut(s)	463
HinfI	GANTC	3 cut(s)	490, 567, 582
HphI	GGTGA	2 cut(s)	362, 383
Hpy166II	GTNNAC	1 cut(s)	445
Hpy188I	TCNGA	2 cut(s)	270, 506
Hpy188III	TCNNGA	4 cut(s)	422, 446, 564, 586
Hpy8I	GTNNAC	1 cut(s)	445
Hpy99I	CGWCG	1 cut(s)	437
HpyAV	CCTTC	2 cut(s)	192, 377
HpyCH4III	ACNGT	2 cut(s)	395, 437
HpyCH4V	TGCA	6 cut(s)	25, 58, 92, 152, 341, 458
HpyF10VI	GCNNNNNNNGC	5 cut(s)	64, 101, 185, 352, 460
Hsp92II	CATG	4 cut(s)	62, 152, 525, 536
HspAI	GCGC	1 cut(s)	463
Kzo9I	GATC	2 cut(s)	265, 363
LpnPI	CCDG	5 cut(s)	11, 180, 221, 485, 512
Lsp1109I	GCAGC	3 cut(s)	104, 164, 391
LweI	GCATC	1 cut(s)	131
MabI	ACCWGGT	1 cut(s)	498
MaeI	CTAG	1 cut(s)	180
MaeIII	GTNAC	1 cut(s)	169
MalI	GATC	2 cut(s)	267, 365
MboI	GATC	2 cut(s)	265, 363
MboII	GAAGA	2 cut(s)	107, 253
MhlI	GDGCHC	1 cut(s)	580
MnlI	CCTC	6 cut(s)	64, 123, 269, 351, 559, 571
MseI	TTAA	2 cut(s)	15, 210
MspCI	CTTAAG	1 cut(s)	209
MspR9I	CCNGG	1 cut(s)	500
Mva1269I	GAATGC	1 cut(s)	220
MvaI	CCWGG	1 cut(s)	500
MvnI	CGCG	1 cut(s)	463
MwoI	GCNNNNNNNGC	5 cut(s)	64, 101, 185, 352, 460
NcoI	CCATGG	1 cut(s)	521
NdeII	GATC	2 cut(s)	265, 363
NlaIII	CATG	4 cut(s)	62, 152, 525, 536
NlaIV	GGNNCC	1 cut(s)	559
NmeAIII	GCCGAG	1 cut(s)	381
NspI	RCATGY	2 cut(s)	62, 152
NspV	TTCGAA	1 cut(s)	493
PaeI	GCATGC	1 cut(s)	62
PcsI	WCGNNNNNNNCGW	1 cut(s)	429
PctI	GAATGC	1 cut(s)	220
PfeI	GAWTC	3 cut(s)	490, 567, 582
PkrI	GCNGC	3 cut(s)	94, 154, 406
Psp6I	CCWGG	1 cut(s)	498
PspGI	CCWGG	1 cut(s)	498
PspN4I	GGNNCC	1 cut(s)	559
PspPI	GGNCC	1 cut(s)	502
PstI	CTGCAG	1 cut(s)	27
RsaI	GTAC	1 cut(s)	478
RsaNI	GTAC	1 cut(s)	477
SaqAI	TTAA	2 cut(s)	15, 210
SatI	GCNGC	3 cut(s)	93, 153, 405
Sau3AI	GATC	2 cut(s)	265, 363
Sau96I	GGNCC	1 cut(s)	502
ScrFI	CCNGG	1 cut(s)	500
SduI	GDGCHC	1 cut(s)	580
SetI	ASST	8 cut(s)	30, 75, 106, 261, 406, 421, 504, 593
SexAI	ACCWGGT	1 cut(s)	498
SfaNI	GCATC	1 cut(s)	131
SfcI	CTRYAG	1 cut(s)	23
SfuI	TTCGAA	1 cut(s)	493
SinI	GGWCC	1 cut(s)	502
SmlI	CTYRAG	2 cut(s)	209, 586
SmoI	CTYRAG	2 cut(s)	209, 586
SphI	GCATGC	1 cut(s)	62
SsiI	CCGC	4 cut(s)	82, 120, 218, 461
SspMI	CTAG	1 cut(s)	180
StyD4I	CCNGG	1 cut(s)	498
StyI	CCWWGG	1 cut(s)	521
TaaI	ACNGT	2 cut(s)	395, 437
TaqI	TCGA	7 cut(s)	264, 275, 423, 471, 493, 565, 580
TaqII	GACCGA	1 cut(s)	299
TfiI	GAWTC	3 cut(s)	490, 567, 582
Tru1I	TTAA	2 cut(s)	15, 210
Tru9I	TTAA	2 cut(s)	15, 210
TseI	GCWGC	3 cut(s)	92, 152, 404
TspDTI	ATGAA	3 cut(s)	65, 293, 527
TspGWI	ACGGA	1 cut(s)	146
Vha464I	CTTAAG	1 cut(s)	209
VpaK11BI	GGWCC	1 cut(s)	502
XceI	RCATGY	2 cut(s)	62, 152
XspI	CTAG	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.