Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0002442

Physical Location & Seq

Genomic Coordinates Forward (+)

84651196 .. 84653652

Gene Structure 2457 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG536300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGTGCTTTATGGCCAGCTTTCAAGATCTGCTCTTCTATCAGAACTGTTTGAGTCAGAATTCTCATTTAGTATCCAAGGCTACTCGTTTGTGGGAGTTGATATTAGCCCGTAAAAGTCAACATGAAGTTCTTGCTTTGGGCCCTATCGAGGATTTAATCGCTCATCGGGAGCATAGGTACCGCATTTCTGGATCTTCTTTGCTTGCAACTATGGATCAGAGCTCTCAGGTTCCTTATGCAGATGTCTTATCTGTCCAGTCTGGTGATTTTACTCCTACACATGTAGATGATAAAGAGCAGAGTGATGGTTCATATGTCAATATTAACAGAGAAAACATGAAGAATACTTTAGATTCATCCCATTCACAAGTAAATGATGAAACTCTTCATCGAGCAGATGAGAGAAGTGGAAGAGTCCACCCAACTGTTGACGTGGCAGAAATTATCAAGCGTTGGACACATGCTTTACAGCGTATTCATAAACAGTCACTTCATATGGCAAAAGCTAATGAGAGAGAGGGTCCAGAAATTCTAAGAAGTGCGCATGAAGGCAGTTCAAGTGGTCATGCCGAGTCATTAGCTGCAACACTAGCTGAACATCAGCAGCACTTGGTTAGATTTCAGGTTCTCATTAATCAACTGAAGGAAGTTGCTCCAGCAATACAAAAGTCAATATCAGAACAGGGAAATTGCGAAACATCTCTCTCTTCCTCCAGTCAAGCTACACTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005856 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0008017 GO:0008092 GO:0008150 GO:0009524 GO:0009553 GO:0009555 GO:0009561 GO:0009987 GO:0015630 GO:0015631 GO:0016043 GO:0032501 GO:0032502 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0048229 GO:0048856 GO:0051011 GO:0055046 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAUS6_N

Protein Analysis

243

Amino Acids

27.2

Weight (kDa)

6.09

Isoelectric Point (pI)

52.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002442)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40740
fragaria_vesca	FvH4_6g52640 FvH4_6g52640 FvH4_6g52640 FvH4_6g52640 FvH4_6g52640 FvH4_6g52640
malus_domestica	MD09G1017400.v1.1 MD17G1018200.v1.1
prunus_persica	Prupe.3G299500_v2.0.a1 Prupe.3G299500_v2.0.a1
pyrus_communis	pycom111g01430 pycom17g01460 pycom17g01470
rosa_chinensis	RchiOBHm_Chr2g0096321 RchiOBHm_Chr2g0166591 RchiOBHm_Chr2g0174171 RchiOBHm_Chr5g0045391 RchiOBHm_Chr6g0248711
rosa_laevigata	RLG00000022253
rosa_multiflora	Rmu_sc0002045.1_g000024 Rmu_ssc0000100.1_g000024 Rmu_ssc0000198.1_g000004
rosa_roxburghii	Rroxscaffold_2G00078390 Rroxscaffold_3G00231180
rosa_rugosa	Rorug02G0575600 Rorug02G0575600
rosa_samantha	Rh2AG655000 Rh2BG666200 Rh2CG630400 Rh2DG680800 Rh4CG097900 Rh5BG312100 Rh5BG536100 Rh5BG536300 Rh5CG559500 Rh5DG322800 Rh6CG160100
rosa_wichuraiana	Rw2G053760 Rw6G003620 Rw7G025810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	543
Acc65I	GGTACC	1 cut(s)	177
AccB1I	GGYRCC	1 cut(s)	177
AciI	CCGC	1 cut(s)	181
AclWI	GGATC	2 cut(s)	199, 222
AcoI	YGGCCR	1 cut(s)	12
AcsI	RAATTY	2 cut(s)	58, 528
AcuI	CTGAAG	1 cut(s)	662
AfaI	GTAC	1 cut(s)	179
AfiI	CCNNNNNNNGG	1 cut(s)	148
AflIII	ACRYGT	1 cut(s)	280
AgsI	TTSAA	2 cut(s)	23, 558
AjiI	CACGTC	1 cut(s)	433
AluBI	AGCT	6 cut(s)	18, 222, 506, 581, 593, 722
AluI	AGCT	6 cut(s)	18, 222, 506, 581, 593, 722
Alw21I	GWGCWC	1 cut(s)	224
AlwI	GGATC	2 cut(s)	199, 222
AoxI	GGCC	2 cut(s)	12, 139
ApaI	GGGCCC	1 cut(s)	143
ApeKI	GCWGC	2 cut(s)	581, 604
ApoI	RAATTY	2 cut(s)	58, 528
AseI	ATTAAT	1 cut(s)	633
Asp700I	GAANNNNTTC	1 cut(s)	384
Asp718I	GGTACC	1 cut(s)	177
AspLEI	GCGC	1 cut(s)	544
AspS9I	GGNCC	3 cut(s)	139, 140, 521
AsuHPI	GGTGA	1 cut(s)	275
AvaII	GGWCC	1 cut(s)	521
BaeGI	GKGCMC	1 cut(s)	143
BalI	TGGCCA	1 cut(s)	14
BanI	GGYRCC	1 cut(s)	177
BanII	GRGCYC	2 cut(s)	143, 224
Bbv12I	GWGCWC	1 cut(s)	224
BbvI	GCAGC	2 cut(s)	568, 616
BccI	CCATC	1 cut(s)	299
BciVI	GTATCC	1 cut(s)	82
BfaI	CTAG	1 cut(s)	590
BfmI	CTRYAG	1 cut(s)	728
BfuI	GTATCC	1 cut(s)	82
BglII	AGATCT	1 cut(s)	25
BisI	GCNGC	2 cut(s)	582, 605
BlsI	GCNGC	2 cut(s)	583, 606
Bme18I	GGWCC	1 cut(s)	521
BmgBI	CACGTC	1 cut(s)	433
BmgT120I	GGNCC	3 cut(s)	139, 140, 521
BmiI	GGNNCC	4 cut(s)	141, 179, 231, 522
BpmI	CTGGAG	2 cut(s)	639, 697
BsaJI	CCNNGG	1 cut(s)	75
BsaXI	ACNNNNNCTCC	2 cut(s)	161, 191
Bsc4I	CCNNNNNNNGG	1 cut(s)	148
Bse1I	ACTGG	2 cut(s)	256, 714
BseDI	CCNNGG	1 cut(s)	75
BseGI	GGATG	1 cut(s)	356
BseLI	CCNNNNNNNGG	1 cut(s)	148
BseMII	CTCAG	1 cut(s)	239
BseNI	ACTGG	2 cut(s)	256, 714
BseSI	GKGCMC	1 cut(s)	143
BseXI	GCAGC	2 cut(s)	568, 616
BshFI	GGCC	2 cut(s)	14, 141
BshNI	GGYRCC	1 cut(s)	177
BsiHKAI	GWGCWC	1 cut(s)	224
BslI	CCNNNNNNNGG	1 cut(s)	148
BsnI	GGCC	2 cut(s)	14, 141
Bsp120I	GGGCCC	1 cut(s)	139
Bsp1286I	GDGCHC	2 cut(s)	143, 224
Bsp143I	GATC	3 cut(s)	25, 191, 214
BspACI	CCGC	1 cut(s)	181
BspANI	GGCC	2 cut(s)	14, 141
BspCNI	CTCAG	1 cut(s)	238
BspLI	GGNNCC	4 cut(s)	141, 179, 231, 522
BspPI	GGATC	2 cut(s)	199, 222
BspQI	GCTCTTC	1 cut(s)	38
BspT107I	GGYRCC	1 cut(s)	177
BsrI	ACTGG	2 cut(s)	256, 714
BssECI	CCNNGG	1 cut(s)	75
BssMI	GATC	3 cut(s)	25, 191, 214
BssT1I	CCWWGG	1 cut(s)	75
Bst4CI	ACNGT	4 cut(s)	47, 427, 486, 729
Bst6I	CTCTTC	4 cut(s)	38, 390, 406, 712
BstC8I	GCNNGC	2 cut(s)	16, 204
BstDEI	CTNAG	2 cut(s)	225, 533
BstF5I	GGATG	1 cut(s)	356
BstHHI	GCGC	1 cut(s)	544
BstKTI	GATC	3 cut(s)	28, 194, 217
BstMBI	GATC	3 cut(s)	25, 191, 214
BstMWI	GCNNNNNNNGC	1 cut(s)	590
BstNSI	RCATGY	2 cut(s)	284, 464
BstSFI	CTRYAG	1 cut(s)	728
BstSLI	GKGCMC	1 cut(s)	143
BstV1I	GCAGC	2 cut(s)	568, 616
BstX2I	RGATCY	2 cut(s)	25, 191
BstYI	RGATCY	2 cut(s)	25, 191
BsuI	GTATCC	1 cut(s)	82
BsuRI	GGCC	2 cut(s)	14, 141
BtrI	CACGTC	1 cut(s)	433
BtsCI	GGATG	1 cut(s)	356
BtsIMutI	CAGTG	1 cut(s)	725
Cac8I	GCNNGC	2 cut(s)	16, 204
CfoI	GCGC	1 cut(s)	544
Cfr13I	GGNCC	3 cut(s)	139, 140, 521
Csp6I	GTAC	1 cut(s)	178
CviAII	CATG	6 cut(s)	122, 281, 337, 461, 545, 566
CviQI	GTAC	1 cut(s)	178
DdeI	CTNAG	2 cut(s)	225, 533
DpnI	GATC	3 cut(s)	27, 193, 216
DpnII	GATC	3 cut(s)	25, 191, 214
EaeI	YGGCCR	1 cut(s)	12
Eam1104I	CTCTTC	4 cut(s)	38, 390, 406, 712
EarI	CTCTTC	4 cut(s)	38, 390, 406, 712
Ecl136II	GAGCTC	1 cut(s)	222
Eco130I	CCWWGG	1 cut(s)	75
Eco24I	GRGCYC	2 cut(s)	143, 224
Eco47I	GGWCC	1 cut(s)	521
Eco53kI	GAGCTC	1 cut(s)	222
Eco57I	CTGAAG	1 cut(s)	662
EcoICRI	GAGCTC	1 cut(s)	222
EcoO109I	RGGNCCY	1 cut(s)	140
EcoRI	GAATTC	1 cut(s)	58
EcoT14I	CCWWGG	1 cut(s)	75
EcoT38I	GRGCYC	2 cut(s)	143, 224
ErhI	CCWWGG	1 cut(s)	75
FaeI	CATG	6 cut(s)	125, 284, 340, 464, 548, 569
FatI	CATG	6 cut(s)	121, 280, 336, 460, 544, 565
FauNDI	CATATG	2 cut(s)	313, 495
Fnu4HI	GCNGC	2 cut(s)	582, 605
FokI	GGATG	1 cut(s)	343
FriOI	GRGCYC	2 cut(s)	143, 224
Fsp4HI	GCNGC	2 cut(s)	582, 605
FspAI	RTGCGCAY	1 cut(s)	543
FspBI	CTAG	1 cut(s)	590
FspI	TGCGCA	1 cut(s)	543
GlaI	GCGC	1 cut(s)	543
GluI	GCNGC	2 cut(s)	582, 605
GsuI	CTGGAG	2 cut(s)	639, 697
HaeIII	GGCC	2 cut(s)	14, 141
HhaI	GCGC	1 cut(s)	544
Hin1II	CATG	6 cut(s)	125, 284, 340, 464, 548, 569
Hin6I	GCGC	1 cut(s)	542
HinP1I	GCGC	1 cut(s)	542
HincII	GTYRAC	2 cut(s)	119, 430
HindII	GTYRAC	2 cut(s)	119, 430
HinfI	GANTC	4 cut(s)	52, 353, 414, 572
HphI	GGTGA	1 cut(s)	275
Hpy166II	GTNNAC	3 cut(s)	119, 418, 430
Hpy188I	TCNGA	4 cut(s)	42, 57, 219, 679
Hpy188III	TCNNGA	4 cut(s)	23, 167, 189, 524
Hpy8I	GTNNAC	3 cut(s)	119, 418, 430
HpyAV	CCTTC	2 cut(s)	542, 637
HpyCH4III	ACNGT	4 cut(s)	47, 427, 486, 729
HpyCH4IV	ACGT	1 cut(s)	432
HpyCH4V	TGCA	3 cut(s)	206, 239, 584
HpyF10VI	GCNNNNNNNGC	1 cut(s)	590
HpyF3I	CTNAG	2 cut(s)	225, 533
HpySE526I	ACGT	1 cut(s)	432
Hsp92II	CATG	6 cut(s)	125, 284, 340, 464, 548, 569
HspAI	GCGC	1 cut(s)	542
KpnI	GGTACC	1 cut(s)	181
Kzo9I	GATC	3 cut(s)	25, 191, 214
LguI	GCTCTTC	1 cut(s)	38
LmnI	GCTCC	2 cut(s)	169, 658
Lsp1109I	GCAGC	2 cut(s)	568, 616
MaeI	CTAG	1 cut(s)	590
MaeII	ACGT	1 cut(s)	432
MaeIII	GTNAC	1 cut(s)	486
MalI	GATC	3 cut(s)	27, 193, 216
MboI	GATC	3 cut(s)	25, 191, 214
MboII	GAAGA	6 cut(s)	25, 186, 352, 377, 423, 699
MflI	RGATCY	2 cut(s)	25, 191
MhlI	GDGCHC	2 cut(s)	143, 224
MlsI	TGGCCA	1 cut(s)	14
MluCI	AATT	4 cut(s)	58, 441, 528, 688
MluNI	TGGCCA	1 cut(s)	14
MlyI	GAGTC	3 cut(s)	61, 423, 581
MmeI	TCCRAC	1 cut(s)	434
MnlI	CCTC	3 cut(s)	142, 511, 721
Mox20I	TGGCCA	1 cut(s)	14
MroXI	GAANNNNTTC	1 cut(s)	384
MscI	TGGCCA	1 cut(s)	14
MseI	TTAA	3 cut(s)	155, 324, 633
MslI	CAYNNNNRTG	1 cut(s)	285
Msp20I	TGGCCA	1 cut(s)	14
MwoI	GCNNNNNNNGC	1 cut(s)	590
NdeI	CATATG	2 cut(s)	313, 495
NdeII	GATC	3 cut(s)	25, 191, 214
NlaIII	CATG	6 cut(s)	125, 284, 340, 464, 548, 569
NlaIV	GGNNCC	4 cut(s)	141, 179, 231, 522
NmeAIII	GCCGAG	1 cut(s)	595
NmuCI	GTSAC	1 cut(s)	486
NsbI	TGCGCA	1 cut(s)	543
NspI	RCATGY	2 cut(s)	284, 464
PciI	ACATGT	1 cut(s)	280
PciSI	GCTCTTC	1 cut(s)	38
PdmI	GAANNNNTTC	1 cut(s)	384
PfeI	GAWTC	1 cut(s)	353
PkrI	GCNGC	2 cut(s)	583, 606
PleI	GAGTC	3 cut(s)	60, 422, 580
PpsI	GAGTC	3 cut(s)	60, 422, 580
PscI	ACATGT	1 cut(s)	280
PshBI	ATTAAT	1 cut(s)	633
Psp124BI	GAGCTC	1 cut(s)	224
PspN4I	GGNNCC	4 cut(s)	141, 179, 231, 522
PspOMI	GGGCCC	1 cut(s)	139
PspPI	GGNCC	3 cut(s)	139, 140, 521
PsuI	RGATCY	2 cut(s)	25, 191
RsaI	GTAC	1 cut(s)	179
RsaNI	GTAC	1 cut(s)	178
RseI	CAYNNNNRTG	1 cut(s)	285
SacI	GAGCTC	1 cut(s)	224
SapI	GCTCTTC	1 cut(s)	38
SaqAI	TTAA	3 cut(s)	155, 324, 633
SatI	GCNGC	2 cut(s)	582, 605
Sau3AI	GATC	3 cut(s)	25, 191, 214
Sau96I	GGNCC	3 cut(s)	139, 140, 521
SchI	GAGTC	3 cut(s)	61, 423, 581
SduI	GDGCHC	2 cut(s)	143, 224
SfcI	CTRYAG	1 cut(s)	728
SinI	GGWCC	1 cut(s)	521
SmiMI	CAYNNNNRTG	1 cut(s)	285
Sse9I	AATT	4 cut(s)	58, 441, 528, 688
SsiI	CCGC	1 cut(s)	181
SspI	AATATT	1 cut(s)	322
SspMI	CTAG	1 cut(s)	590
SstI	GAGCTC	1 cut(s)	224
StyI	CCWWGG	1 cut(s)	75
TaaI	ACNGT	4 cut(s)	47, 427, 486, 729
TaiI	ACGT	1 cut(s)	435
TaqI	TCGA	2 cut(s)	147, 391
TasI	AATT	4 cut(s)	58, 441, 528, 688
TfiI	GAWTC	1 cut(s)	353
Tru1I	TTAA	3 cut(s)	155, 324, 633
Tru9I	TTAA	3 cut(s)	155, 324, 633
TscAI	CASTG	1 cut(s)	732
TseFI	GTSAC	1 cut(s)	486
TseI	GCWGC	2 cut(s)	581, 604
Tsp45I	GTSAC	1 cut(s)	486
TspDTI	ATGAA	9 cut(s)	138, 300, 345, 353, 377, 393, 467, 482, 561
TspRI	CASTG	1 cut(s)	732
VpaK11BI	GGWCC	1 cut(s)	521
VspI	ATTAAT	1 cut(s)	633
XapI	RAATTY	2 cut(s)	58, 528
XceI	RCATGY	2 cut(s)	284, 464
XmnI	GAANNNNTTC	1 cut(s)	384
XspI	CTAG	1 cut(s)	590

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.