Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0002442

Physical Location & Seq

Genomic Coordinates Forward (+)

17772959 .. 17776619

Gene Structure 3661 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG097900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGCTTTCTTCTTCTTCAATCTCATCACCCCCTTTCAATTTCATCGGTACAAGAACCCTTGGGAGTATCAGTAAGATAGACCAAGCCTTTTCGATCCTCTTTTCTAGGTTTGTAGAACTTCTGTGGCAACTTTCTTTGCATGCTTTGCGAGAGGTTCATAGGCGGACATTTGCAGCTGATGTAGCTTCTAACCCTCTTCCCGCATCATTGACGGATGTGGCCTTTTCACATGCAGCCACTTTACTTCCTGTTACAAAGGCTAGAATAGCACTTGAAAGAAGGAAGTTTCTTAAGAATGCGGAAACAGCAGTACAGAGACAGGCCATAAAATCGGATACTGGTGGATTGCAACAAGTGACTTTCAAACTTCAGTTTGCAGAGTCCACTCTTTTTGTTGAGGTTTCACAAGGTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005856 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0008017 GO:0008092 GO:0008150 GO:0009524 GO:0009553 GO:0009555 GO:0009561 GO:0009987 GO:0015630 GO:0015631 GO:0016043 GO:0032501 GO:0032502 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0048229 GO:0048856 GO:0051011 GO:0055046 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAUS6_N

Protein Analysis

138

Amino Acids

15.15

Weight (kDa)

10.25

Isoelectric Point (pI)

43.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAUS6_N	PF14661	36 - 109	7.9e-07	HAUS augmin-like complex subunit 6 N-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002442)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40740
fragaria_vesca	FvH4_6g52640 FvH4_6g52640 FvH4_6g52640 FvH4_6g52640 FvH4_6g52640 FvH4_6g52640
malus_domestica	MD09G1017400.v1.1 MD17G1018200.v1.1
prunus_persica	Prupe.3G299500_v2.0.a1 Prupe.3G299500_v2.0.a1
pyrus_communis	pycom111g01430 pycom17g01460 pycom17g01470
rosa_chinensis	RchiOBHm_Chr2g0096321 RchiOBHm_Chr2g0166591 RchiOBHm_Chr2g0174171 RchiOBHm_Chr5g0045391 RchiOBHm_Chr6g0248711
rosa_laevigata	RLG00000022253
rosa_multiflora	Rmu_sc0002045.1_g000024 Rmu_ssc0000100.1_g000024 Rmu_ssc0000198.1_g000004
rosa_roxburghii	Rroxscaffold_2G00078390 Rroxscaffold_3G00231180
rosa_rugosa	Rorug02G0575600 Rorug02G0575600
rosa_samantha	Rh2AG655000 Rh2BG666200 Rh2CG630400 Rh2DG680800 Rh4CG097900 Rh5BG312100 Rh5BG536100 Rh5BG536300 Rh5CG559500 Rh5DG322800 Rh6CG160100
rosa_wichuraiana	Rw2G053760 Rw6G003620 Rw7G025810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	163, 201, 299
AclWI	GGATC	1 cut(s)	88
AcuI	CTGAAG	1 cut(s)	353
AdeI	CACNNNGTG	1 cut(s)	410
AfaI	GTAC	2 cut(s)	49, 312
AflII	CTTAAG	1 cut(s)	290
AgsI	TTSAA	4 cut(s)	18, 37, 275, 364
AluBI	AGCT	2 cut(s)	176, 185
AluI	AGCT	2 cut(s)	176, 185
Alw26I	GTCTC	1 cut(s)	310
AlwI	GGATC	1 cut(s)	88
AoxI	GGCC	2 cut(s)	219, 321
ApeKI	GCWGC	2 cut(s)	173, 233
AsuHPI	GGTGA	1 cut(s)	18
BbvI	GCAGC	2 cut(s)	185, 245
BciVI	GTATCC	1 cut(s)	328
BcoDI	GTCTC	1 cut(s)	310
BfaI	CTAG	2 cut(s)	105, 261
BfrI	CTTAAG	1 cut(s)	290
BfuI	GTATCC	1 cut(s)	328
BisI	GCNGC	2 cut(s)	174, 234
BlsI	GCNGC	2 cut(s)	175, 235
BmsI	GCATC	1 cut(s)	212
BsaJI	CCNNGG	1 cut(s)	58
BsaXI	ACNNNNNCTCC	2 cut(s)	55, 85
Bse1I	ACTGG	1 cut(s)	343
BseDI	CCNNGG	1 cut(s)	58
BseGI	GGATG	1 cut(s)	220
BseNI	ACTGG	1 cut(s)	343
BseXI	GCAGC	2 cut(s)	185, 245
BshFI	GGCC	2 cut(s)	221, 323
BsmAI	GTCTC	1 cut(s)	310
BsmI	GAATGC	1 cut(s)	301
BsnI	GGCC	2 cut(s)	221, 323
Bsp143I	GATC	1 cut(s)	93
BspACI	CCGC	3 cut(s)	163, 201, 299
BspANI	GGCC	2 cut(s)	221, 323
BspPI	GGATC	1 cut(s)	88
BspTI	CTTAAG	1 cut(s)	290
BsrI	ACTGG	1 cut(s)	343
BssECI	CCNNGG	1 cut(s)	58
BssMI	GATC	1 cut(s)	93
BssT1I	CCWWGG	1 cut(s)	58
Bst6I	CTCTTC	1 cut(s)	201
BstAFI	CTTAAG	1 cut(s)	290
BstAPI	GCANNNNNTGC	1 cut(s)	145
BstC8I	GCNNGC	1 cut(s)	141
BstF5I	GGATG	1 cut(s)	220
BstKTI	GATC	1 cut(s)	96
BstMAI	GTCTC	1 cut(s)	310
BstMBI	GATC	1 cut(s)	93
BstMWI	GCNNNNNNNGC	4 cut(s)	145, 182, 266, 305
BstNSI	RCATGY	2 cut(s)	143, 233
BstV1I	GCAGC	2 cut(s)	185, 245
BsuI	GTATCC	1 cut(s)	328
BsuRI	GGCC	2 cut(s)	221, 323
BtsCI	GGATG	1 cut(s)	220
Cac8I	GCNNGC	1 cut(s)	141
Csp6I	GTAC	2 cut(s)	48, 311
CspCI	CAANNNNNGTGG	2 cut(s)	373, 408
CviAII	CATG	2 cut(s)	140, 230
CviJI	RGCY	7 cut(s)	86, 176, 185, 221, 236, 260, 323
CviKI_1	RGCY	7 cut(s)	86, 176, 185, 221, 236, 260, 323
CviQI	GTAC	2 cut(s)	48, 311
DpnI	GATC	1 cut(s)	95
DpnII	GATC	1 cut(s)	93
DraIII	CACNNNGTG	1 cut(s)	410
Eam1104I	CTCTTC	1 cut(s)	201
EarI	CTCTTC	1 cut(s)	201
EciI	GGCGGA	1 cut(s)	178
Eco130I	CCWWGG	1 cut(s)	58
Eco57I	CTGAAG	1 cut(s)	353
EcoT14I	CCWWGG	1 cut(s)	58
ErhI	CCWWGG	1 cut(s)	58
FaeI	CATG	2 cut(s)	143, 233
FaiI	YATR	5 cut(s)	141, 159, 231, 326, 415
FatI	CATG	2 cut(s)	139, 229
FauI	CCCGC	1 cut(s)	208
Fnu4HI	GCNGC	2 cut(s)	174, 234
FokI	GGATG	1 cut(s)	227
Fsp4HI	GCNGC	2 cut(s)	174, 234
FspBI	CTAG	2 cut(s)	105, 261
GluI	GCNGC	2 cut(s)	174, 234
HaeIII	GGCC	2 cut(s)	221, 323
Hin1II	CATG	2 cut(s)	143, 233
HinfI	GANTC	1 cut(s)	380
HphI	GGTGA	1 cut(s)	18
Hpy166II	GTNNAC	1 cut(s)	384
Hpy188I	TCNGA	1 cut(s)	334
Hpy8I	GTNNAC	1 cut(s)	384
HpyAV	CCTTC	1 cut(s)	273
HpyCH4V	TGCA	6 cut(s)	139, 173, 233, 349, 377, 413
HpyF10VI	GCNNNNNNNGC	4 cut(s)	145, 182, 266, 305
Hsp92II	CATG	2 cut(s)	143, 233
Kzo9I	GATC	1 cut(s)	93
LpnPI	CCDG	3 cut(s)	261, 305, 324
Lsp1109I	GCAGC	2 cut(s)	185, 245
LweI	GCATC	1 cut(s)	212
MaeI	CTAG	2 cut(s)	105, 261
MaeIII	GTNAC	2 cut(s)	250, 355
MalI	GATC	1 cut(s)	95
MboI	GATC	1 cut(s)	93
MboII	GAAGA	3 cut(s)	3, 6, 188
MluCI	AATT	1 cut(s)	37
MlyI	GAGTC	1 cut(s)	389
MnlI	CCTC	4 cut(s)	107, 145, 204, 391
MseI	TTAA	1 cut(s)	291
MspA1I	CMGCKG	1 cut(s)	176
MspCI	CTTAAG	1 cut(s)	290
Mva1269I	GAATGC	1 cut(s)	301
MwoI	GCNNNNNNNGC	4 cut(s)	145, 182, 266, 305
NdeII	GATC	1 cut(s)	93
NlaIII	CATG	2 cut(s)	143, 233
NmuCI	GTSAC	1 cut(s)	355
NspI	RCATGY	2 cut(s)	143, 233
PaeI	GCATGC	1 cut(s)	143
PctI	GAATGC	1 cut(s)	301
PkrI	GCNGC	2 cut(s)	175, 235
PleI	GAGTC	1 cut(s)	388
PpsI	GAGTC	1 cut(s)	388
PvuII	CAGCTG	1 cut(s)	176
RsaI	GTAC	2 cut(s)	49, 312
RsaNI	GTAC	2 cut(s)	48, 311
SaqAI	TTAA	1 cut(s)	291
SatI	GCNGC	2 cut(s)	174, 234
Sau3AI	GATC	1 cut(s)	93
SchI	GAGTC	1 cut(s)	389
SetI	ASST	6 cut(s)	110, 156, 178, 187, 402, 412
SfaNI	GCATC	1 cut(s)	212
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
SphI	GCATGC	1 cut(s)	143
Sse9I	AATT	1 cut(s)	37
SsiI	CCGC	3 cut(s)	163, 201, 299
SspMI	CTAG	2 cut(s)	105, 261
StyI	CCWWGG	1 cut(s)	58
TaqI	TCGA	1 cut(s)	92
TasI	AATT	1 cut(s)	37
TatI	WGTACW	1 cut(s)	310
Tru1I	TTAA	1 cut(s)	291
Tru9I	TTAA	1 cut(s)	291
TseFI	GTSAC	1 cut(s)	355
TseI	GCWGC	2 cut(s)	173, 233
Tsp45I	GTSAC	1 cut(s)	355
TspDTI	ATGAA	2 cut(s)	31, 146
TspGWI	ACGGA	1 cut(s)	227
Vha464I	CTTAAG	1 cut(s)	290
XceI	RCATGY	2 cut(s)	143, 233
XspI	CTAG	2 cut(s)	105, 261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.