Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002045.1

Orthogroup ID

OG0002442

Physical Location & Seq

Genomic Coordinates Forward (+)

128840 .. 129325

Gene Structure 486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002045.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ctgaacggcgactcaaagaccctgcaatggcctcctcccccggccattatcgaactcggagcctcgaactccactccccgggtcgggttcttccgccactccaaccccaaactcggcgagcagctcctctacttcatcctctcttccctccgtggcccaattcaattcgccaaggatttcgataaggtctgtccaatcttcgattctacgcaatctcgcgattttcgtaaggttgtgcaagggattattagcgagctcgaatcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005856 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0008017 GO:0008092 GO:0008150 GO:0009524 GO:0009553 GO:0009555 GO:0009561 GO:0009987 GO:0015630 GO:0015631 GO:0016043 GO:0032501 GO:0032502 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0048229 GO:0048856 GO:0051011 GO:0055046 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAUS6_N

Protein Analysis

88

Amino Acids

9.85

Weight (kDa)

8.13

Isoelectric Point (pI)

44.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002442)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40740
fragaria_vesca	FvH4_6g52640 FvH4_6g52640 FvH4_6g52640 FvH4_6g52640 FvH4_6g52640 FvH4_6g52640
malus_domestica	MD09G1017400.v1.1 MD17G1018200.v1.1
prunus_persica	Prupe.3G299500_v2.0.a1 Prupe.3G299500_v2.0.a1
pyrus_communis	pycom111g01430 pycom17g01460 pycom17g01470
rosa_chinensis	RchiOBHm_Chr2g0096321 RchiOBHm_Chr2g0166591 RchiOBHm_Chr2g0174171 RchiOBHm_Chr5g0045391 RchiOBHm_Chr6g0248711
rosa_laevigata	RLG00000022253
rosa_multiflora	Rmu_sc0002045.1_g000024 Rmu_ssc0000100.1_g000024 Rmu_ssc0000198.1_g000004
rosa_roxburghii	Rroxscaffold_2G00078390 Rroxscaffold_3G00231180
rosa_rugosa	Rorug02G0575600 Rorug02G0575600
rosa_samantha	Rh2AG655000 Rh2BG666200 Rh2CG630400 Rh2DG680800 Rh4CG097900 Rh5BG312100 Rh5BG536100 Rh5BG536300 Rh5CG559500 Rh5DG322800 Rh6CG160100
rosa_wichuraiana	Rw2G053760 Rw6G003620 Rw7G025810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	219
AciI	CCGC	1 cut(s)	94
AcoI	YGGCCR	1 cut(s)	42
AfiI	CCNNNNNNNGG	5 cut(s)	27, 78, 83, 84, 113
AgsI	TTSAA	1 cut(s)	164
AjuI	GAANNNNNNNTTGG	2 cut(s)	187, 219
AluBI	AGCT	2 cut(s)	124, 256
AluI	AGCT	2 cut(s)	124, 256
Alw21I	GWGCWC	1 cut(s)	258
Ama87I	CYCGRG	1 cut(s)	78
AoxI	GGCC	3 cut(s)	29, 42, 154
ApeKI	GCWGC	1 cut(s)	121
AspS9I	GGNCC	1 cut(s)	155
AsuC2I	CCSGG	3 cut(s)	41, 79, 80
AvaI	CYCGRG	1 cut(s)	78
BanII	GRGCYC	1 cut(s)	258
Bbv12I	GWGCWC	1 cut(s)	258
BbvI	GCAGC	1 cut(s)	133
BceAI	ACGGC	1 cut(s)	22
BcnI	CCSGG	3 cut(s)	41, 79, 80
BisI	GCNGC	1 cut(s)	122
BlsI	GCNGC	1 cut(s)	123
Bme1390I	CCNGG	3 cut(s)	41, 79, 80
BmeT110I	CYCGRG	1 cut(s)	78
BmgT120I	GGNCC	1 cut(s)	155
BmiI	GGNNCC	1 cut(s)	61
BmrFI	CCNGG	3 cut(s)	41, 79, 80
BpuMI	CCSGG	3 cut(s)	41, 79, 80
BsaJI	CCNNGG	5 cut(s)	39, 77, 78, 151, 171
Bsc4I	CCNNNNNNNGG	5 cut(s)	27, 78, 83, 84, 113
Bse3DI	GCAATG	1 cut(s)	32
BseDI	CCNNGG	5 cut(s)	39, 77, 78, 151, 171
BseGI	GGATG	1 cut(s)	135
BseLI	CCNNNNNNNGG	5 cut(s)	27, 78, 83, 84, 113
BseMI	GCAATG	1 cut(s)	32
BseRI	GAGGAG	2 cut(s)	24, 116
BseXI	GCAGC	1 cut(s)	133
Bsh1236I	CGCG	1 cut(s)	219
BshFI	GGCC	3 cut(s)	31, 44, 156
BsiHKAI	GWGCWC	1 cut(s)	258
BsiHKCI	CYCGRG	1 cut(s)	78
BsiSI	CCGG	2 cut(s)	41, 79
BslI	CCNNNNNNNGG	5 cut(s)	27, 78, 83, 84, 113
BsnI	GGCC	3 cut(s)	31, 44, 156
BsoBI	CYCGRG	1 cut(s)	78
Bsp1286I	GDGCHC	1 cut(s)	258
Bsp68I	TCGCGA	1 cut(s)	219
BspACI	CCGC	1 cut(s)	94
BspANI	GGCC	3 cut(s)	31, 44, 156
BspFNI	CGCG	1 cut(s)	219
BspLI	GGNNCC	1 cut(s)	61
BsrDI	GCAATG	1 cut(s)	32
BssECI	CCNNGG	5 cut(s)	39, 77, 78, 151, 171
BssT1I	CCWWGG	1 cut(s)	171
Bst6I	CTCTTC	1 cut(s)	148
BstC8I	GCNNGC	2 cut(s)	119, 254
BstDSI	CCRYGG	1 cut(s)	151
BstF5I	GGATG	1 cut(s)	135
BstFNI	CGCG	1 cut(s)	219
BstSCI	CCNGG	3 cut(s)	39, 77, 78
BstUI	CGCG	1 cut(s)	219
BstV1I	GCAGC	1 cut(s)	133
BsuRI	GGCC	3 cut(s)	31, 44, 156
BtgI	CCRYGG	1 cut(s)	151
BtsCI	GGATG	1 cut(s)	135
BtuMI	TCGCGA	1 cut(s)	219
Cac8I	GCNNGC	2 cut(s)	119, 254
Cfr13I	GGNCC	1 cut(s)	155
Cfr9I	CCCGGG	1 cut(s)	78
CviJI	RGCY	6 cut(s)	31, 44, 62, 124, 156, 256
CviKI_1	RGCY	6 cut(s)	31, 44, 62, 124, 156, 256
EaeI	YGGCCR	1 cut(s)	42
Eam1104I	CTCTTC	1 cut(s)	148
EarI	CTCTTC	1 cut(s)	148
EciI	GGCGGA	1 cut(s)	83
Ecl136II	GAGCTC	1 cut(s)	256
Eco130I	CCWWGG	1 cut(s)	171
Eco24I	GRGCYC	1 cut(s)	258
Eco53kI	GAGCTC	1 cut(s)	256
Eco88I	CYCGRG	1 cut(s)	78
EcoICRI	GAGCTC	1 cut(s)	256
EcoT14I	CCWWGG	1 cut(s)	171
EcoT38I	GRGCYC	1 cut(s)	258
ErhI	CCWWGG	1 cut(s)	171
Fnu4HI	GCNGC	1 cut(s)	122
FokI	GGATG	1 cut(s)	122
FriOI	GRGCYC	1 cut(s)	258
Fsp4HI	GCNGC	1 cut(s)	122
GluI	GCNGC	1 cut(s)	122
HaeIII	GGCC	3 cut(s)	31, 44, 156
HapII	CCGG	2 cut(s)	41, 79
HinfI	GANTC	3 cut(s)	11, 203, 260
HpaII	CCGG	2 cut(s)	41, 79
Hpy188I	TCNGA	1 cut(s)	59
Hpy188III	TCNNGA	1 cut(s)	218
HpyCH4V	TGCA	2 cut(s)	25, 238
LmnI	GCTCC	2 cut(s)	59, 129
LpnPI	CCDG	3 cut(s)	35, 54, 92
Lsp1109I	GCAGC	1 cut(s)	133
MboII	GAAGA	3 cut(s)	82, 135, 190
MhlI	GDGCHC	1 cut(s)	258
MluCI	AATT	2 cut(s)	159, 164
MlyI	GAGTC	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	126
MnlI	CCTC	6 cut(s)	42, 45, 73, 137, 149, 158
MspI	CCGG	2 cut(s)	41, 79
MspR9I	CCNGG	3 cut(s)	41, 79, 80
MvnI	CGCG	1 cut(s)	219
NciI	CCSGG	3 cut(s)	41, 79, 80
NlaIV	GGNNCC	1 cut(s)	61
NmeAIII	GCCGAG	1 cut(s)	93
NruI	TCGCGA	1 cut(s)	219
PcsI	WCGNNNNNNNCGW	1 cut(s)	223
PfeI	GAWTC	2 cut(s)	203, 260
PkrI	GCNGC	1 cut(s)	123
PleI	GAGTC	1 cut(s)	5
PpsI	GAGTC	1 cut(s)	5
Psp124BI	GAGCTC	1 cut(s)	258
PspN4I	GGNNCC	1 cut(s)	61
PspPI	GGNCC	1 cut(s)	155
RruI	TCGCGA	1 cut(s)	219
SacI	GAGCTC	1 cut(s)	258
SatI	GCNGC	1 cut(s)	122
Sau96I	GGNCC	1 cut(s)	155
SchI	GAGTC	1 cut(s)	5
ScrFI	CCNGG	3 cut(s)	41, 79, 80
SduI	GDGCHC	1 cut(s)	258
SetI	ASST	4 cut(s)	126, 189, 234, 258
SmaI	CCCGGG	1 cut(s)	80
Sse9I	AATT	2 cut(s)	159, 164
SsiI	CCGC	1 cut(s)	94
SstI	GAGCTC	1 cut(s)	258
StyD4I	CCNGG	3 cut(s)	39, 77, 78
StyI	CCWWGG	1 cut(s)	171
TaqI	TCGA	5 cut(s)	51, 65, 180, 201, 258
TasI	AATT	2 cut(s)	159, 164
TfiI	GAWTC	2 cut(s)	203, 260
TseI	GCWGC	1 cut(s)	121
TspDTI	ATGAA	1 cut(s)	124
TspGWI	ACGGA	1 cut(s)	140
TspMI	CCCGGG	1 cut(s)	78
XmaI	CCCGGG	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.