Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002442

Physical Location & Seq

Genomic Coordinates Reverse (-)

4645783 .. 4646151

Gene Structure 369 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22293

Sequence Viewer

CDS Protein Promoter (2k)

Length: 180 bp

ATGATCTTGCAGGATTTCGATAAGGTCTGGCCAATCTTCGATTCTACGCAATCTCGCGATTTTCGTAAGGTTGTGCAAGGGATTTTTAGCGAGCTCGAATCGCAAGGGGCGCTTCCCAGGAGCAATTCGAGGGTTTCATCACTTGCTACATGTTGTGGACCGAGTTCATTCGGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005856 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0008017 GO:0008092 GO:0008150 GO:0009524 GO:0009553 GO:0009555 GO:0009561 GO:0009987 GO:0015630 GO:0015631 GO:0016043 GO:0032501 GO:0032502 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0048229 GO:0048856 GO:0051011 GO:0055046 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAUS6_N

Protein Analysis

59

Amino Acids

6.57

Weight (kDa)

6.02

Isoelectric Point (pI)

61.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAUS6_N	PF14661	4 - 53	6.7e-11	HAUS augmin-like complex subunit 6 N-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0002442)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40740
fragaria_vesca	FvH4_6g52640 FvH4_6g52640 FvH4_6g52640 FvH4_6g52640 FvH4_6g52640 FvH4_6g52640
malus_domestica	MD09G1017400.v1.1 MD17G1018200.v1.1
prunus_persica	Prupe.3G299500_v2.0.a1 Prupe.3G299500_v2.0.a1
pyrus_communis	pycom111g01430 pycom17g01460 pycom17g01470
rosa_chinensis	RchiOBHm_Chr2g0096321 RchiOBHm_Chr2g0166591 RchiOBHm_Chr2g0174171 RchiOBHm_Chr5g0045391 RchiOBHm_Chr6g0248711
rosa_laevigata	RLG00000022253
rosa_multiflora	Rmu_sc0002045.1_g000024 Rmu_ssc0000100.1_g000024 Rmu_ssc0000198.1_g000004
rosa_roxburghii	Rroxscaffold_2G00078390 Rroxscaffold_3G00231180
rosa_rugosa	Rorug02G0575600 Rorug02G0575600
rosa_samantha	Rh2AG655000 Rh2BG666200 Rh2CG630400 Rh2DG680800 Rh4CG097900 Rh5BG312100 Rh5BG536100 Rh5BG536300 Rh5CG559500 Rh5DG322800 Rh6CG160100
rosa_wichuraiana	Rw2G053760 Rw6G003620 Rw7G025810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	57
AcoI	YGGCCR	1 cut(s)	29
AflIII	ACRYGT	1 cut(s)	149
AjnI	CCWGG	1 cut(s)	116
AjuI	GAANNNNNNNTTGG	2 cut(s)	25, 57
AluBI	AGCT	1 cut(s)	94
AluI	AGCT	1 cut(s)	94
Alw21I	GWGCWC	1 cut(s)	96
AoxI	GGCC	1 cut(s)	29
AspLEI	GCGC	1 cut(s)	112
AspS9I	GGNCC	1 cut(s)	158
AvaII	GGWCC	1 cut(s)	158
BalI	TGGCCA	1 cut(s)	31
BanII	GRGCYC	1 cut(s)	96
Bbv12I	GWGCWC	1 cut(s)	96
BciT130I	CCWGG	1 cut(s)	118
BfoI	RGCGCY	1 cut(s)	113
Bme1390I	CCNGG	1 cut(s)	118
Bme18I	GGWCC	1 cut(s)	158
BmgT120I	GGNCC	1 cut(s)	158
BmrFI	CCNGG	1 cut(s)	118
BsaJI	CCNNGG	1 cut(s)	116
BseBI	CCWGG	1 cut(s)	118
BseDI	CCNNGG	1 cut(s)	116
Bsh1236I	CGCG	1 cut(s)	57
BshFI	GGCC	1 cut(s)	31
BsiHKAI	GWGCWC	1 cut(s)	96
BsnI	GGCC	1 cut(s)	31
Bsp1286I	GDGCHC	1 cut(s)	96
Bsp143I	GATC	1 cut(s)	3
Bsp68I	TCGCGA	1 cut(s)	57
BspANI	GGCC	1 cut(s)	31
BspFNI	CGCG	1 cut(s)	57
BssECI	CCNNGG	1 cut(s)	116
BssMI	GATC	1 cut(s)	3
Bst2UI	CCWGG	1 cut(s)	118
BstC8I	GCNNGC	1 cut(s)	92
BstFNI	CGCG	1 cut(s)	57
BstH2I	RGCGCY	1 cut(s)	113
BstHHI	GCGC	1 cut(s)	112
BstKTI	GATC	1 cut(s)	6
BstMBI	GATC	1 cut(s)	3
BstMWI	GCNNNNNNNGC	2 cut(s)	100, 109
BstNI	CCWGG	1 cut(s)	118
BstNSI	RCATGY	1 cut(s)	153
BstSCI	CCNGG	1 cut(s)	116
BstUI	CGCG	1 cut(s)	57
BsuRI	GGCC	1 cut(s)	31
BtuMI	TCGCGA	1 cut(s)	57
Cac8I	GCNNGC	1 cut(s)	92
CfoI	GCGC	1 cut(s)	112
Cfr13I	GGNCC	1 cut(s)	158
CviAII	CATG	1 cut(s)	150
CviJI	RGCY	2 cut(s)	31, 94
CviKI_1	RGCY	2 cut(s)	31, 94
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
EaeI	YGGCCR	1 cut(s)	29
Ecl136II	GAGCTC	1 cut(s)	94
Eco24I	GRGCYC	1 cut(s)	96
Eco47I	GGWCC	1 cut(s)	158
Eco53kI	GAGCTC	1 cut(s)	94
EcoICRI	GAGCTC	1 cut(s)	94
EcoRII	CCWGG	1 cut(s)	116
EcoT38I	GRGCYC	1 cut(s)	96
FaeI	CATG	1 cut(s)	153
FaiI	YATR	1 cut(s)	151
FalI	AAGNNNNNCTT	2 cut(s)	96, 128
FatI	CATG	1 cut(s)	149
FriOI	GRGCYC	1 cut(s)	96
GlaI	GCGC	1 cut(s)	111
HaeII	RGCGCY	1 cut(s)	113
HaeIII	GGCC	1 cut(s)	31
HhaI	GCGC	1 cut(s)	112
Hin1II	CATG	1 cut(s)	153
Hin6I	GCGC	1 cut(s)	110
HinP1I	GCGC	1 cut(s)	110
HinfI	GANTC	2 cut(s)	41, 98
Hpy166II	GTNNAC	1 cut(s)	158
Hpy188III	TCNNGA	1 cut(s)	56
Hpy8I	GTNNAC	1 cut(s)	158
HpyCH4V	TGCA	2 cut(s)	10, 76
HpyF10VI	GCNNNNNNNGC	2 cut(s)	100, 109
Hsp92II	CATG	1 cut(s)	153
HspAI	GCGC	1 cut(s)	110
Kzo9I	GATC	1 cut(s)	3
LmnI	GCTCC	1 cut(s)	120
LpnPI	CCDG	3 cut(s)	13, 103, 130
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MboII	GAAGA	1 cut(s)	28
MhlI	GDGCHC	1 cut(s)	96
MlsI	TGGCCA	1 cut(s)	31
MluCI	AATT	1 cut(s)	124
MluNI	TGGCCA	1 cut(s)	31
MnlI	CCTC	1 cut(s)	123
Mox20I	TGGCCA	1 cut(s)	31
MscI	TGGCCA	1 cut(s)	31
Msp20I	TGGCCA	1 cut(s)	31
MspR9I	CCNGG	1 cut(s)	118
MvaI	CCWGG	1 cut(s)	118
MvnI	CGCG	1 cut(s)	57
MwoI	GCNNNNNNNGC	2 cut(s)	100, 109
NdeII	GATC	1 cut(s)	3
NlaIII	CATG	1 cut(s)	153
NruI	TCGCGA	1 cut(s)	57
NspI	RCATGY	1 cut(s)	153
PciI	ACATGT	1 cut(s)	149
PcsI	WCGNNNNNNNCGW	1 cut(s)	61
PfeI	GAWTC	2 cut(s)	41, 98
PscI	ACATGT	1 cut(s)	149
Psp124BI	GAGCTC	1 cut(s)	96
Psp6I	CCWGG	1 cut(s)	116
PspGI	CCWGG	1 cut(s)	116
PspPI	GGNCC	1 cut(s)	158
RruI	TCGCGA	1 cut(s)	57
SacI	GAGCTC	1 cut(s)	96
Sau3AI	GATC	1 cut(s)	3
Sau96I	GGNCC	1 cut(s)	158
ScrFI	CCNGG	1 cut(s)	118
SduI	GDGCHC	1 cut(s)	96
SetI	ASST	3 cut(s)	27, 72, 96
SinI	GGWCC	1 cut(s)	158
Sse9I	AATT	1 cut(s)	124
SstI	GAGCTC	1 cut(s)	96
StyD4I	CCNGG	1 cut(s)	116
TaqI	TCGA	4 cut(s)	18, 39, 96, 128
TaqII	GACCGA	1 cut(s)	175
TasI	AATT	1 cut(s)	124
TfiI	GAWTC	2 cut(s)	41, 98
TspDTI	ATGAA	2 cut(s)	126, 156
VpaK11BI	GGWCC	1 cut(s)	158
XceI	RCATGY	1 cut(s)	153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.