Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0002442

Physical Location & Seq

Genomic Coordinates Forward (+)

84648009 .. 84649027

Gene Structure 1019 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG536100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGCCTCCTCCCCCGACCACAACCACACCCTGAACGGCGATTCCAACACCCAGCAATGGCCTCCTCCCCCGGCCATTATCGGACTCGGAGCCTCCAACTCCACTCCCCGGGTCGGGTTCTTCCGCCACTCCAACCCCAAACTCGGCGAGCAGCTCCTCTACTTCATCATCTCTTCCCTCCGTGGCCCAATTCAATCCGCCAAGGATTTCGATAAGGTCTGGCCAATCTTCGATTCTACGCAATCTCGCGATTTTCGTAAGGTTGTGCAAGGGATTATTAGCGAGCACGAATCGCAAGGGGTGCTTCCCAGGAGCAATTCGAGGGTTTCATCACTTGCTACATGTTGTGGACCGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005856 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0008017 GO:0008092 GO:0008150 GO:0009524 GO:0009553 GO:0009555 GO:0009561 GO:0009987 GO:0015630 GO:0015631 GO:0016043 GO:0032501 GO:0032502 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0048229 GO:0048856 GO:0051011 GO:0055046 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAUS6_N

Protein Analysis

119

Amino Acids

13.07

Weight (kDa)

9.23

Isoelectric Point (pI)

45.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAUS6_N	PF14661	37 - 118	1.6e-16	HAUS augmin-like complex subunit 6 N-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002442)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40740
fragaria_vesca	FvH4_6g52640 FvH4_6g52640 FvH4_6g52640 FvH4_6g52640 FvH4_6g52640 FvH4_6g52640
malus_domestica	MD09G1017400.v1.1 MD17G1018200.v1.1
prunus_persica	Prupe.3G299500_v2.0.a1 Prupe.3G299500_v2.0.a1
pyrus_communis	pycom111g01430 pycom17g01460 pycom17g01470
rosa_chinensis	RchiOBHm_Chr2g0096321 RchiOBHm_Chr2g0166591 RchiOBHm_Chr2g0174171 RchiOBHm_Chr5g0045391 RchiOBHm_Chr6g0248711
rosa_laevigata	RLG00000022253
rosa_multiflora	Rmu_sc0002045.1_g000024 Rmu_ssc0000100.1_g000024 Rmu_ssc0000198.1_g000004
rosa_roxburghii	Rroxscaffold_2G00078390 Rroxscaffold_3G00231180
rosa_rugosa	Rorug02G0575600 Rorug02G0575600
rosa_samantha	Rh2AG655000 Rh2BG666200 Rh2CG630400 Rh2DG680800 Rh4CG097900 Rh5BG312100 Rh5BG536100 Rh5BG536300 Rh5CG559500 Rh5DG322800 Rh6CG160100
rosa_wichuraiana	Rw2G053760 Rw6G003620 Rw7G025810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	249
AciI	CCGC	2 cut(s)	124, 198
AcoI	YGGCCR	2 cut(s)	72, 221
AfiI	CCNNNNNNNGG	5 cut(s)	57, 108, 113, 114, 143
AflIII	ACRYGT	1 cut(s)	341
AgsI	TTSAA	1 cut(s)	194
AjnI	CCWGG	1 cut(s)	308
AjuI	GAANNNNNNNTTGG	2 cut(s)	217, 249
AloI	GAACNNNNNNTCC	2 cut(s)	26, 58
AluBI	AGCT	1 cut(s)	154
AluI	AGCT	1 cut(s)	154
Alw21I	GWGCWC	1 cut(s)	288
Ama87I	CYCGRG	1 cut(s)	108
AoxI	GGCC	5 cut(s)	3, 59, 72, 184, 221
ApeKI	GCWGC	1 cut(s)	151
AspS9I	GGNCC	2 cut(s)	185, 350
AsuC2I	CCSGG	3 cut(s)	71, 109, 110
AvaI	CYCGRG	1 cut(s)	108
AvaII	GGWCC	1 cut(s)	350
BalI	TGGCCA	1 cut(s)	223
Bbv12I	GWGCWC	1 cut(s)	288
BbvI	GCAGC	1 cut(s)	163
BceAI	ACGGC	1 cut(s)	52
BciT130I	CCWGG	1 cut(s)	310
BcnI	CCSGG	3 cut(s)	71, 109, 110
BisI	GCNGC	1 cut(s)	152
BlsI	GCNGC	1 cut(s)	153
Bme1390I	CCNGG	4 cut(s)	71, 109, 110, 310
Bme18I	GGWCC	1 cut(s)	350
BmeT110I	CYCGRG	1 cut(s)	108
BmgT120I	GGNCC	2 cut(s)	185, 350
BmiI	GGNNCC	1 cut(s)	91
BmrFI	CCNGG	4 cut(s)	71, 109, 110, 310
BpuMI	CCSGG	3 cut(s)	71, 109, 110
BsaJI	CCNNGG	7 cut(s)	69, 107, 108, 181, 201, 308, 353
Bsc4I	CCNNNNNNNGG	5 cut(s)	57, 108, 113, 114, 143
Bse3DI	GCAATG	1 cut(s)	62
BseBI	CCWGG	1 cut(s)	310
BseDI	CCNNGG	7 cut(s)	69, 107, 108, 181, 201, 308, 353
BseLI	CCNNNNNNNGG	5 cut(s)	57, 108, 113, 114, 143
BseMI	GCAATG	1 cut(s)	62
BseRI	GAGGAG	2 cut(s)	54, 146
BseXI	GCAGC	1 cut(s)	163
BseYI	CCCAGC	1 cut(s)	51
Bsh1236I	CGCG	1 cut(s)	249
BshFI	GGCC	5 cut(s)	5, 61, 74, 186, 223
BsiHKAI	GWGCWC	1 cut(s)	288
BsiHKCI	CYCGRG	1 cut(s)	108
BsiSI	CCGG	2 cut(s)	71, 109
BslI	CCNNNNNNNGG	5 cut(s)	57, 108, 113, 114, 143
BsnI	GGCC	5 cut(s)	5, 61, 74, 186, 223
BsoBI	CYCGRG	1 cut(s)	108
Bsp1286I	GDGCHC	1 cut(s)	288
Bsp68I	TCGCGA	1 cut(s)	249
BspACI	CCGC	2 cut(s)	124, 198
BspANI	GGCC	5 cut(s)	5, 61, 74, 186, 223
BspFNI	CGCG	1 cut(s)	249
BspLI	GGNNCC	1 cut(s)	91
BsrDI	GCAATG	1 cut(s)	62
BssECI	CCNNGG	7 cut(s)	69, 107, 108, 181, 201, 308, 353
BssT1I	CCWWGG	1 cut(s)	201
Bst2UI	CCWGG	1 cut(s)	310
Bst6I	CTCTTC	1 cut(s)	178
BstAPI	GCANNNNNTGC	1 cut(s)	301
BstC8I	GCNNGC	2 cut(s)	149, 284
BstDSI	CCRYGG	1 cut(s)	181
BstFNI	CGCG	1 cut(s)	249
BstMWI	GCNNNNNNNGC	2 cut(s)	292, 301
BstNI	CCWGG	1 cut(s)	310
BstNSI	RCATGY	1 cut(s)	345
BstSCI	CCNGG	4 cut(s)	69, 107, 108, 308
BstUI	CGCG	1 cut(s)	249
BstV1I	GCAGC	1 cut(s)	163
BsuRI	GGCC	5 cut(s)	5, 61, 74, 186, 223
BtgI	CCRYGG	1 cut(s)	181
BtuMI	TCGCGA	1 cut(s)	249
Cac8I	GCNNGC	2 cut(s)	149, 284
Cfr13I	GGNCC	2 cut(s)	185, 350
Cfr9I	CCCGGG	1 cut(s)	108
CviAII	CATG	1 cut(s)	342
CviJI	RGCY	7 cut(s)	5, 61, 74, 92, 154, 186, 223
CviKI_1	RGCY	7 cut(s)	5, 61, 74, 92, 154, 186, 223
EaeI	YGGCCR	2 cut(s)	72, 221
Eam1104I	CTCTTC	1 cut(s)	178
EarI	CTCTTC	1 cut(s)	178
EciI	GGCGGA	2 cut(s)	113, 187
Eco130I	CCWWGG	1 cut(s)	201
Eco47I	GGWCC	1 cut(s)	350
Eco88I	CYCGRG	1 cut(s)	108
EcoRII	CCWGG	1 cut(s)	308
EcoT14I	CCWWGG	1 cut(s)	201
ErhI	CCWWGG	1 cut(s)	201
FaeI	CATG	1 cut(s)	345
FaiI	YATR	1 cut(s)	343
FalI	AAGNNNNNCTT	2 cut(s)	288, 320
FatI	CATG	1 cut(s)	341
Fnu4HI	GCNGC	1 cut(s)	152
Fsp4HI	GCNGC	1 cut(s)	152
GluI	GCNGC	1 cut(s)	152
GsaI	CCCAGC	1 cut(s)	55
HaeIII	GGCC	5 cut(s)	5, 61, 74, 186, 223
HapII	CCGG	2 cut(s)	71, 109
Hin1II	CATG	1 cut(s)	345
HinfI	GANTC	4 cut(s)	41, 84, 233, 290
HpaII	CCGG	2 cut(s)	71, 109
Hpy166II	GTNNAC	1 cut(s)	350
Hpy188I	TCNGA	2 cut(s)	83, 89
Hpy188III	TCNNGA	1 cut(s)	248
Hpy8I	GTNNAC	1 cut(s)	350
HpyCH4V	TGCA	1 cut(s)	268
HpyF10VI	GCNNNNNNNGC	2 cut(s)	292, 301
Hsp92II	CATG	1 cut(s)	345
LmnI	GCTCC	3 cut(s)	89, 159, 312
LpnPI	CCDG	7 cut(s)	44, 65, 84, 122, 205, 295, 322
Lsp1109I	GCAGC	1 cut(s)	163
MboII	GAAGA	3 cut(s)	112, 165, 220
MhlI	GDGCHC	1 cut(s)	288
MlsI	TGGCCA	1 cut(s)	223
MluCI	AATT	2 cut(s)	189, 316
MluNI	TGGCCA	1 cut(s)	223
MlyI	GAGTC	1 cut(s)	78
MmeI	TCCRAC	3 cut(s)	69, 120, 156
MnlI	CCTC	9 cut(s)	16, 19, 72, 75, 103, 167, 188, 315, 348
Mox20I	TGGCCA	1 cut(s)	223
MscI	TGGCCA	1 cut(s)	223
Msp20I	TGGCCA	1 cut(s)	223
MspI	CCGG	2 cut(s)	71, 109
MspR9I	CCNGG	4 cut(s)	71, 109, 110, 310
MvaI	CCWGG	1 cut(s)	310
MvnI	CGCG	1 cut(s)	249
MwoI	GCNNNNNNNGC	2 cut(s)	292, 301
NciI	CCSGG	3 cut(s)	71, 109, 110
NlaIII	CATG	1 cut(s)	345
NlaIV	GGNNCC	1 cut(s)	91
NmeAIII	GCCGAG	1 cut(s)	123
NruI	TCGCGA	1 cut(s)	249
NspI	RCATGY	1 cut(s)	345
PciI	ACATGT	1 cut(s)	341
PcsI	WCGNNNNNNNCGW	1 cut(s)	253
PfeI	GAWTC	3 cut(s)	41, 233, 290
PkrI	GCNGC	1 cut(s)	153
PleI	GAGTC	1 cut(s)	78
PpsI	GAGTC	1 cut(s)	78
PscI	ACATGT	1 cut(s)	341
Psp6I	CCWGG	1 cut(s)	308
PspFI	CCCAGC	1 cut(s)	51
PspGI	CCWGG	1 cut(s)	308
PspN4I	GGNNCC	1 cut(s)	91
PspPI	GGNCC	2 cut(s)	185, 350
RruI	TCGCGA	1 cut(s)	249
SatI	GCNGC	1 cut(s)	152
Sau96I	GGNCC	2 cut(s)	185, 350
SchI	GAGTC	1 cut(s)	78
ScrFI	CCNGG	4 cut(s)	71, 109, 110, 310
SduI	GDGCHC	1 cut(s)	288
SetI	ASST	4 cut(s)	156, 219, 264, 359
SinI	GGWCC	1 cut(s)	350
SmaI	CCCGGG	1 cut(s)	110
Sse9I	AATT	2 cut(s)	189, 316
SsiI	CCGC	2 cut(s)	124, 198
StyD4I	CCNGG	4 cut(s)	69, 107, 108, 308
StyI	CCWWGG	1 cut(s)	201
TaqI	TCGA	3 cut(s)	210, 231, 320
TasI	AATT	2 cut(s)	189, 316
TfiI	GAWTC	3 cut(s)	41, 233, 290
TseI	GCWGC	1 cut(s)	151
TspDTI	ATGAA	2 cut(s)	154, 318
TspGWI	ACGGA	1 cut(s)	170
TspMI	CCCGGG	1 cut(s)	108
VpaK11BI	GGWCC	1 cut(s)	350
XceI	RCATGY	1 cut(s)	345
XmaI	CCCGGG	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.