Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000100.1

Orthogroup ID

OG0002442

Physical Location & Seq

Genomic Coordinates Forward (+)

96841 .. 98014

Gene Structure 1174 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000100.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ctgaacggcgattccaacacccagcaatggcctcctcccccggccattatcggactcggagcctctaactccactccccgggtcgggttcttccgccactccaaccccaaactcggcgtgcagctcctctacttcatcctctcttccctccgtggcccaattcaatccgccaaggatttcgataaggtctggccaatcttcgattttcgtaaggttgtgcaagggattattagcgagctcgaatcgcaaggggtgcttcccaggagcaattcgagggtttcatcacttgctacatgttgtggaccgaggtttgtagaacttctgtggcaactttctttgcatgctttgcgagaggttcataggcggacatttgcagctgatgtagcttctaaccctcttcccgcatcattgacagatgtggccttttcacatgcagccactttacttcctgttacaaaggtagtgttgaccacgcacgtaaaacttaaagcatgcatgatgtttgctcccaatagcgttttgaagttgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005856 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0008017 GO:0008092 GO:0008150 GO:0009524 GO:0009553 GO:0009555 GO:0009561 GO:0009987 GO:0015630 GO:0015631 GO:0016043 GO:0032501 GO:0032502 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0048229 GO:0048856 GO:0051011 GO:0055046 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAUS6_N

Protein Analysis

176

Amino Acids

19.29

Weight (kDa)

9.95

Isoelectric Point (pI)

38.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002442)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40740
fragaria_vesca	FvH4_6g52640 FvH4_6g52640 FvH4_6g52640 FvH4_6g52640 FvH4_6g52640 FvH4_6g52640
malus_domestica	MD09G1017400.v1.1 MD17G1018200.v1.1
prunus_persica	Prupe.3G299500_v2.0.a1 Prupe.3G299500_v2.0.a1
pyrus_communis	pycom111g01430 pycom17g01460 pycom17g01470
rosa_chinensis	RchiOBHm_Chr2g0096321 RchiOBHm_Chr2g0166591 RchiOBHm_Chr2g0174171 RchiOBHm_Chr5g0045391 RchiOBHm_Chr6g0248711
rosa_laevigata	RLG00000022253
rosa_multiflora	Rmu_sc0002045.1_g000024 Rmu_ssc0000100.1_g000024 Rmu_ssc0000198.1_g000004
rosa_roxburghii	Rroxscaffold_2G00078390 Rroxscaffold_3G00231180
rosa_rugosa	Rorug02G0575600 Rorug02G0575600
rosa_samantha	Rh2AG655000 Rh2BG666200 Rh2CG630400 Rh2DG680800 Rh4CG097900 Rh5BG312100 Rh5BG536100 Rh5BG536300 Rh5CG559500 Rh5DG322800 Rh6CG160100
rosa_wichuraiana	Rw2G053760 Rw6G003620 Rw7G025810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	94, 168, 364, 402
AcoI	YGGCCR	2 cut(s)	42, 191
AfiI	CCNNNNNNNGG	5 cut(s)	27, 78, 83, 84, 113
AflIII	ACRYGT	1 cut(s)	293
AgsI	TTSAA	2 cut(s)	164, 523
AjnI	CCWGG	1 cut(s)	260
AloI	GAACNNNNNNTCC	1 cut(s)	28
AluBI	AGCT	4 cut(s)	124, 238, 377, 386
AluI	AGCT	4 cut(s)	124, 238, 377, 386
Alw21I	GWGCWC	1 cut(s)	240
Ama87I	CYCGRG	1 cut(s)	78
AoxI	GGCC	5 cut(s)	29, 42, 154, 191, 420
ApeKI	GCWGC	3 cut(s)	121, 374, 434
AspS9I	GGNCC	2 cut(s)	155, 302
AsuC2I	CCSGG	3 cut(s)	41, 79, 80
AvaI	CYCGRG	1 cut(s)	78
AvaII	GGWCC	1 cut(s)	302
BalI	TGGCCA	1 cut(s)	193
BanII	GRGCYC	1 cut(s)	240
Bbv12I	GWGCWC	1 cut(s)	240
BbvI	GCAGC	3 cut(s)	133, 386, 446
BceAI	ACGGC	1 cut(s)	22
BciT130I	CCWGG	1 cut(s)	262
BcnI	CCSGG	3 cut(s)	41, 79, 80
BisI	GCNGC	3 cut(s)	122, 375, 435
BlsI	GCNGC	3 cut(s)	123, 376, 436
Bme1390I	CCNGG	4 cut(s)	41, 79, 80, 262
Bme18I	GGWCC	1 cut(s)	302
BmeT110I	CYCGRG	1 cut(s)	78
BmgT120I	GGNCC	2 cut(s)	155, 302
BmiI	GGNNCC	1 cut(s)	61
BmrFI	CCNGG	4 cut(s)	41, 79, 80, 262
BmsI	GCATC	1 cut(s)	413
BpuMI	CCSGG	3 cut(s)	41, 79, 80
BsaAI	YACGTR	1 cut(s)	478
BsaJI	CCNNGG	7 cut(s)	39, 77, 78, 151, 171, 260, 305
Bsc4I	CCNNNNNNNGG	5 cut(s)	27, 78, 83, 84, 113
Bse3DI	GCAATG	1 cut(s)	32
BseBI	CCWGG	1 cut(s)	262
BseDI	CCNNGG	7 cut(s)	39, 77, 78, 151, 171, 260, 305
BseGI	GGATG	1 cut(s)	135
BseLI	CCNNNNNNNGG	5 cut(s)	27, 78, 83, 84, 113
BseMI	GCAATG	1 cut(s)	32
BseRI	GAGGAG	2 cut(s)	24, 116
BseXI	GCAGC	3 cut(s)	133, 386, 446
BseYI	CCCAGC	1 cut(s)	21
BsgI	GTGCAG	1 cut(s)	140
BshFI	GGCC	5 cut(s)	31, 44, 156, 193, 422
BsiHKAI	GWGCWC	1 cut(s)	240
BsiHKCI	CYCGRG	1 cut(s)	78
BsiSI	CCGG	2 cut(s)	41, 79
BslI	CCNNNNNNNGG	5 cut(s)	27, 78, 83, 84, 113
BsnI	GGCC	5 cut(s)	31, 44, 156, 193, 422
BsoBI	CYCGRG	1 cut(s)	78
Bsp1286I	GDGCHC	1 cut(s)	240
BspACI	CCGC	4 cut(s)	94, 168, 364, 402
BspANI	GGCC	5 cut(s)	31, 44, 156, 193, 422
BspLI	GGNNCC	1 cut(s)	61
BsrDI	GCAATG	1 cut(s)	32
BssECI	CCNNGG	7 cut(s)	39, 77, 78, 151, 171, 260, 305
BssT1I	CCWWGG	1 cut(s)	171
Bst2UI	CCWGG	1 cut(s)	262
Bst6I	CTCTTC	2 cut(s)	148, 402
BstAPI	GCANNNNNTGC	2 cut(s)	253, 346
BstBAI	YACGTR	1 cut(s)	478
BstC8I	GCNNGC	4 cut(s)	119, 236, 342, 493
BstDSI	CCRYGG	1 cut(s)	151
BstF5I	GGATG	1 cut(s)	135
BstMWI	GCNNNNNNNGC	4 cut(s)	244, 253, 346, 383
BstNI	CCWGG	1 cut(s)	262
BstNSI	RCATGY	4 cut(s)	297, 344, 434, 495
BstSCI	CCNGG	4 cut(s)	39, 77, 78, 260
BstV1I	GCAGC	3 cut(s)	133, 386, 446
BsuRI	GGCC	5 cut(s)	31, 44, 156, 193, 422
BtgI	CCRYGG	1 cut(s)	151
BtsCI	GGATG	1 cut(s)	135
Cac8I	GCNNGC	4 cut(s)	119, 236, 342, 493
Cfr13I	GGNCC	2 cut(s)	155, 302
Cfr9I	CCCGGG	1 cut(s)	78
CviAII	CATG	5 cut(s)	294, 341, 431, 492, 496
EaeI	YGGCCR	2 cut(s)	42, 191
Eam1104I	CTCTTC	2 cut(s)	148, 402
EarI	CTCTTC	2 cut(s)	148, 402
EciI	GGCGGA	3 cut(s)	83, 157, 379
Ecl136II	GAGCTC	1 cut(s)	238
Eco130I	CCWWGG	1 cut(s)	171
Eco24I	GRGCYC	1 cut(s)	240
Eco47I	GGWCC	1 cut(s)	302
Eco53kI	GAGCTC	1 cut(s)	238
Eco88I	CYCGRG	1 cut(s)	78
EcoICRI	GAGCTC	1 cut(s)	238
EcoRII	CCWGG	1 cut(s)	260
EcoT14I	CCWWGG	1 cut(s)	171
EcoT22I	ATGCAT	1 cut(s)	497
EcoT38I	GRGCYC	1 cut(s)	240
ErhI	CCWWGG	1 cut(s)	171
FaeI	CATG	5 cut(s)	297, 344, 434, 495, 499
FaiI	YATR	6 cut(s)	295, 342, 360, 432, 493, 497
FalI	AAGNNNNNCTT	2 cut(s)	240, 272
FatI	CATG	5 cut(s)	293, 340, 430, 491, 495
FauI	CCCGC	1 cut(s)	409
Fnu4HI	GCNGC	3 cut(s)	122, 375, 435
FokI	GGATG	1 cut(s)	122
FriOI	GRGCYC	1 cut(s)	240
Fsp4HI	GCNGC	3 cut(s)	122, 375, 435
GluI	GCNGC	3 cut(s)	122, 375, 435
GsaI	CCCAGC	1 cut(s)	25
HaeIII	GGCC	5 cut(s)	31, 44, 156, 193, 422
HapII	CCGG	2 cut(s)	41, 79
Hin1II	CATG	5 cut(s)	297, 344, 434, 495, 499
HincII	GTYRAC	1 cut(s)	468
HindII	GTYRAC	1 cut(s)	468
HinfI	GANTC	3 cut(s)	11, 54, 242
HpaII	CCGG	2 cut(s)	41, 79
Hpy166II	GTNNAC	2 cut(s)	302, 468
Hpy188I	TCNGA	2 cut(s)	53, 59
Hpy8I	GTNNAC	2 cut(s)	302, 468
HpyCH4IV	ACGT	1 cut(s)	477
HpyCH4V	TGCA	6 cut(s)	121, 220, 340, 374, 434, 495
HpyF10VI	GCNNNNNNNGC	4 cut(s)	244, 253, 346, 383
HpySE526I	ACGT	1 cut(s)	477
Hsp92II	CATG	5 cut(s)	297, 344, 434, 495, 499
LmnI	GCTCC	4 cut(s)	59, 129, 264, 511
LpnPI	CCDG	7 cut(s)	35, 54, 92, 175, 247, 274, 462
Lsp1109I	GCAGC	3 cut(s)	133, 386, 446
LweI	GCATC	1 cut(s)	413
MaeII	ACGT	1 cut(s)	477
MaeIII	GTNAC	1 cut(s)	451
MboII	GAAGA	4 cut(s)	82, 135, 190, 389
MhlI	GDGCHC	1 cut(s)	240
MlsI	TGGCCA	1 cut(s)	193
MluCI	AATT	2 cut(s)	159, 268
MluNI	TGGCCA	1 cut(s)	193
MlyI	GAGTC	1 cut(s)	48
MmeI	TCCRAC	2 cut(s)	39, 126
Mox20I	TGGCCA	1 cut(s)	193
Mph1103I	ATGCAT	1 cut(s)	497
MscI	TGGCCA	1 cut(s)	193
MseI	TTAA	1 cut(s)	486
Msp20I	TGGCCA	1 cut(s)	193
MspA1I	CMGCKG	1 cut(s)	377
MspI	CCGG	2 cut(s)	41, 79
MspR9I	CCNGG	4 cut(s)	41, 79, 80, 262
MvaI	CCWGG	1 cut(s)	262
MwoI	GCNNNNNNNGC	4 cut(s)	244, 253, 346, 383
NciI	CCSGG	3 cut(s)	41, 79, 80
NlaIII	CATG	5 cut(s)	297, 344, 434, 495, 499
NlaIV	GGNNCC	1 cut(s)	61
NmeAIII	GCCGAG	1 cut(s)	93
NsiI	ATGCAT	1 cut(s)	497
NspI	RCATGY	4 cut(s)	297, 344, 434, 495
PaeI	GCATGC	2 cut(s)	344, 495
PciI	ACATGT	1 cut(s)	293
PfeI	GAWTC	2 cut(s)	11, 242
PkrI	GCNGC	3 cut(s)	123, 376, 436
PleI	GAGTC	1 cut(s)	48
PpsI	GAGTC	1 cut(s)	48
Ppu21I	YACGTR	1 cut(s)	478
PscI	ACATGT	1 cut(s)	293
Psp124BI	GAGCTC	1 cut(s)	240
Psp6I	CCWGG	1 cut(s)	260
PspFI	CCCAGC	1 cut(s)	21
PspGI	CCWGG	1 cut(s)	260
PspN4I	GGNNCC	1 cut(s)	61
PspPI	GGNCC	2 cut(s)	155, 302
PvuII	CAGCTG	1 cut(s)	377
SacI	GAGCTC	1 cut(s)	240
SaqAI	TTAA	1 cut(s)	486
SatI	GCNGC	3 cut(s)	122, 375, 435
Sau96I	GGNCC	2 cut(s)	155, 302
SchI	GAGTC	1 cut(s)	48
ScrFI	CCNGG	4 cut(s)	41, 79, 80, 262
SduI	GDGCHC	1 cut(s)	240
SfaNI	GCATC	1 cut(s)	413
SinI	GGWCC	1 cut(s)	302
SmaI	CCCGGG	1 cut(s)	80
SphI	GCATGC	2 cut(s)	344, 495
Sse9I	AATT	2 cut(s)	159, 268
SsiI	CCGC	4 cut(s)	94, 168, 364, 402
SstI	GAGCTC	1 cut(s)	240
StyD4I	CCNGG	4 cut(s)	39, 77, 78, 260
StyI	CCWWGG	1 cut(s)	171
TaiI	ACGT	1 cut(s)	480
TaqI	TCGA	4 cut(s)	180, 201, 240, 272
TaqII	GACCGA	1 cut(s)	319
TasI	AATT	2 cut(s)	159, 268
TfiI	GAWTC	2 cut(s)	11, 242
Tru1I	TTAA	1 cut(s)	486
Tru9I	TTAA	1 cut(s)	486
TseI	GCWGC	3 cut(s)	121, 374, 434
TspDTI	ATGAA	3 cut(s)	124, 270, 347
TspGWI	ACGGA	1 cut(s)	140
TspMI	CCCGGG	1 cut(s)	78
VpaK11BI	GGWCC	1 cut(s)	302
XceI	RCATGY	4 cut(s)	297, 344, 434, 495
XmaI	CCCGGG	1 cut(s)	78
Zsp2I	ATGCAT	1 cut(s)	497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.