Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0005675

Physical Location & Seq

Genomic Coordinates Forward (+)

1057910 .. 1059373

Gene Structure 1464 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGCGAATTTGCTTATCAACAGAACCCTGAAATCAATCGTAAACTCCAAACTGATCGGAGCTTTCTCTTCTCGAGCTCGCCACCTCAGCTCCGCCGCCACCGCCGAGCAGCCCCCATCCGACGGCCCATCTTCGCTCTTCACCTTCTCCTCCGACGGAAAAGAAGACAAGAGCAACAGAAATACCCAAGATGACAGCATATTGGTCAAGTCGCCGTCGAGTTCGAGTTCCAAGCGCGAAGCGGCGTCGTCGGTGACGATGCCGATGTCGTTCATGACGGGGTCCATCGTGGGAAAGAGGTTTTACAATCAAGTGACGACGAGGCCGGCCGACGACGGGAATGGGTGGACTGTGATGCTCGATTACCGGACGCTCAAAACGCCATCGAATAGGCCCCTAAAGCTTCCTACTTTAGCTCTGGCAAAGGCCATTGCGGCGGAATGGGAATACCAGGAAACAGATGGGATTAGGCCCTTTACAATGCCTCTTATGAAGCATGCTTGTACTGCACTGGAAAGAGTTCCTCTGACTCGGCCAAAGGTTATAGATTATTTGATGAAGAAATTTAATCAAGATTTAGTCTTCTGTCGTGCCCCGAACGACAATGATATCACTAGTATTGTCCATGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0008150 GO:0009987 GO:0016043 GO:0016604 GO:0016607 GO:0022607 GO:0031974 GO:0031981 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043461 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0065003 GO:0070013 GO:0070071 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ATP12

Protein Analysis

211

Amino Acids

23.2

Weight (kDa)

9.39

Isoelectric Point (pI)

45.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP12	PF07542	99 - 204	8.9e-27	ATP12 chaperone protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005675)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40660
fragaria_vesca	FvH4_6g52290 FvH4_6g52310
malus_domestica	MD09G1019000.v1.1 MD17G1019600.v1.1
prunus_persica	Prupe.3G298100_v2.0.a1
pyrus_communis	pycom111g01580 pycom17g01620
rosa_chinensis	RchiOBHm_Chr2g0173821 RchiOBHm_Chr2g0174241
rosa_laevigata	RLG00000022226 RLG00000022231
rosa_multiflora	Rmu_sc0003188.1_g000011 Rmu_sc0037316.1_g000001
rosa_roxburghii	Rroxscaffold_2G00078300 Rroxscaffold_2G00078590 Rroxscaffold_4G00327960
rosa_rugosa	Rorug02G0573100 Rorug02G0573500
rosa_samantha	Rh2AG652100 Rh2AG652300 Rh2AG656100 Rh2BG662900 Rh2BG663100 Rh2BG667300 Rh2CG627500 Rh2DG678000
rosa_wichuraiana	Rw2G053550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	237
AciI	CCGC	6 cut(s)	93, 96, 102, 242, 434, 437
AcoI	YGGCCR	2 cut(s)	327, 533
AcsI	RAATTY	2 cut(s)	7, 563
AcyI	GRCGYC	1 cut(s)	245
AfaI	GTAC	1 cut(s)	505
AfiI	CCNNNNNNNGG	2 cut(s)	122, 336
AhlI	ACTAGT	1 cut(s)	614
AjnI	CCWGG	1 cut(s)	450
AluBI	AGCT	5 cut(s)	62, 77, 90, 403, 416
AluI	AGCT	5 cut(s)	62, 77, 90, 403, 416
Alw21I	GWGCWC	1 cut(s)	79
Ama87I	CYCGRG	1 cut(s)	72
AoxI	GGCC	7 cut(s)	124, 323, 327, 392, 426, 470, 533
ApeKI	GCWGC	1 cut(s)	109
ApoI	RAATTY	2 cut(s)	7, 563
Asp700I	GAANNNNTTC	1 cut(s)	519
AspLEI	GCGC	1 cut(s)	237
AspS9I	GGNCC	4 cut(s)	125, 282, 393, 471
AsuHPI	GGTGA	2 cut(s)	133, 265
AvaI	CYCGRG	1 cut(s)	72
AvaII	GGWCC	1 cut(s)	282
BaeGI	GKGCMC	1 cut(s)	595
BanII	GRGCYC	1 cut(s)	79
BbsI	GAAGAC	2 cut(s)	171, 574
Bbv12I	GWGCWC	1 cut(s)	79
BbvCI	CCTCAGC	1 cut(s)	86
BbvI	GCAGC	1 cut(s)	121
BccI	CCATC	5 cut(s)	124, 136, 293, 391, 455
BceAI	ACGGC	2 cut(s)	139, 199
BciT130I	CCWGG	1 cut(s)	452
BcuI	ACTAGT	1 cut(s)	614
BfaI	CTAG	1 cut(s)	615
BglI	GCCNNNNNGGC	1 cut(s)	434
BisI	GCNGC	4 cut(s)	96, 110, 243, 435
BlsI	GCNGC	4 cut(s)	97, 111, 244, 436
Bme1390I	CCNGG	1 cut(s)	452
Bme18I	GGWCC	1 cut(s)	282
BmeT110I	CYCGRG	1 cut(s)	72
BmgT120I	GGNCC	4 cut(s)	125, 282, 393, 471
BmiI	GGNNCC	2 cut(s)	283, 395
BmrFI	CCNGG	1 cut(s)	452
BmsI	GCATC	2 cut(s)	249, 345
BpiI	GAAGAC	2 cut(s)	171, 574
Bpu10I	CCTNAGC	1 cut(s)	86
BsaHI	GRCGYC	1 cut(s)	245
BsaWI	WCCGGW	1 cut(s)	366
BsaXI	ACNNNNNCTCC	2 cut(s)	74, 104
Bsc4I	CCNNNNNNNGG	2 cut(s)	122, 336
Bse118I	RCCGGY	1 cut(s)	325
Bse1I	ACTGG	1 cut(s)	516
Bse3DI	GCAATG	1 cut(s)	429
BseBI	CCWGG	1 cut(s)	452
BseGI	GGATG	1 cut(s)	116
BseLI	CCNNNNNNNGG	2 cut(s)	122, 336
BseMI	GCAATG	1 cut(s)	429
BseMII	CTCAG	1 cut(s)	100
BseNI	ACTGG	1 cut(s)	516
BseRI	GAGGAG	1 cut(s)	139
BseSI	GKGCMC	1 cut(s)	595
BseX3I	CGGCCG	1 cut(s)	327
BseXI	GCAGC	1 cut(s)	121
BsgI	GTGCAG	1 cut(s)	492
Bsh1236I	CGCG	1 cut(s)	237
Bsh1285I	CGRYCG	1 cut(s)	330
BshFI	GGCC	7 cut(s)	126, 325, 329, 394, 428, 472, 535
BsiEI	CGRYCG	1 cut(s)	330
BsiHKAI	GWGCWC	1 cut(s)	79
BsiHKCI	CYCGRG	1 cut(s)	72
BsiSI	CCGG	2 cut(s)	326, 367
BslI	CCNNNNNNNGG	2 cut(s)	122, 336
BsnI	GGCC	7 cut(s)	126, 325, 329, 394, 428, 472, 535
BsoBI	CYCGRG	1 cut(s)	72
Bsp1286I	GDGCHC	2 cut(s)	79, 595
Bsp143I	GATC	1 cut(s)	54
BspACI	CCGC	6 cut(s)	93, 96, 102, 242, 434, 437
BspANI	GGCC	7 cut(s)	126, 325, 329, 394, 428, 472, 535
BspCNI	CTCAG	1 cut(s)	99
BspFNI	CGCG	1 cut(s)	237
BspHI	TCATGA	1 cut(s)	273
BspLI	GGNNCC	2 cut(s)	283, 395
BspQI	GCTCTTC	1 cut(s)	143
BsrDI	GCAATG	1 cut(s)	429
BsrFI	RCCGGY	1 cut(s)	325
BsrI	ACTGG	1 cut(s)	516
BssAI	RCCGGY	1 cut(s)	325
BssMI	GATC	1 cut(s)	54
BssNI	GRCGYC	1 cut(s)	245
Bst2UI	CCWGG	1 cut(s)	452
Bst4CI	ACNGT	1 cut(s)	352
Bst6I	CTCTTC	2 cut(s)	73, 143
BstACI	GRCGYC	1 cut(s)	245
BstC8I	GCNNGC	3 cut(s)	79, 327, 498
BstDEI	CTNAG	1 cut(s)	86
BstF5I	GGATG	1 cut(s)	116
BstFNI	CGCG	1 cut(s)	237
BstHHI	GCGC	1 cut(s)	237
BstKTI	GATC	1 cut(s)	57
BstMBI	GATC	1 cut(s)	54
BstMCI	CGRYCG	1 cut(s)	330
BstMWI	GCNNNNNNNGC	6 cut(s)	87, 101, 379, 400, 434, 506
BstNI	CCWGG	1 cut(s)	452
BstNSI	RCATGY	1 cut(s)	500
BstSCI	CCNGG	1 cut(s)	450
BstSLI	GKGCMC	1 cut(s)	595
BstUI	CGCG	1 cut(s)	237
BstV1I	GCAGC	1 cut(s)	121
BstV2I	GAAGAC	2 cut(s)	171, 574
BstZI	CGGCCG	1 cut(s)	327
BsuRI	GGCC	7 cut(s)	126, 325, 329, 394, 428, 472, 535
BtsCI	GGATG	1 cut(s)	116
BtsIMutI	CAGTG	1 cut(s)	509
Cac8I	GCNNGC	3 cut(s)	79, 327, 498
CciI	TCATGA	1 cut(s)	273
CfoI	GCGC	1 cut(s)	237
Cfr10I	RCCGGY	1 cut(s)	325
Cfr13I	GGNCC	4 cut(s)	125, 282, 393, 471
CseI	GACGC	2 cut(s)	234, 379
Csp6I	GTAC	1 cut(s)	504
CviAII	CATG	3 cut(s)	274, 497, 626
CviQI	GTAC	1 cut(s)	504
DdeI	CTNAG	1 cut(s)	86
DpnI	GATC	1 cut(s)	56
DpnII	GATC	1 cut(s)	54
EaeI	YGGCCR	2 cut(s)	327, 533
EagI	CGGCCG	1 cut(s)	327
Eam1104I	CTCTTC	2 cut(s)	73, 143
EarI	CTCTTC	2 cut(s)	73, 143
EciI	GGCGGA	2 cut(s)	82, 452
Ecl136II	GAGCTC	1 cut(s)	77
EclXI	CGGCCG	1 cut(s)	327
Eco24I	GRGCYC	1 cut(s)	79
Eco32I	GATATC	1 cut(s)	610
Eco47I	GGWCC	1 cut(s)	282
Eco52I	CGGCCG	1 cut(s)	327
Eco53kI	GAGCTC	1 cut(s)	77
Eco88I	CYCGRG	1 cut(s)	72
EcoICRI	GAGCTC	1 cut(s)	77
EcoO109I	RGGNCCY	2 cut(s)	393, 471
EcoRII	CCWGG	1 cut(s)	450
EcoRV	GATATC	1 cut(s)	610
EcoT38I	GRGCYC	1 cut(s)	79
FaeI	CATG	3 cut(s)	277, 500, 629
FaiI	YATR	6 cut(s)	200, 275, 491, 498, 545, 627
FatI	CATG	3 cut(s)	273, 496, 625
Fnu4HI	GCNGC	4 cut(s)	96, 110, 243, 435
FokI	GGATG	1 cut(s)	103
FriOI	GRGCYC	1 cut(s)	79
FseI	GGCCGGCC	1 cut(s)	329
Fsp4HI	GCNGC	4 cut(s)	96, 110, 243, 435
FspBI	CTAG	1 cut(s)	615
GlaI	GCGC	1 cut(s)	236
GluI	GCNGC	4 cut(s)	96, 110, 243, 435
HaeIII	GGCC	7 cut(s)	126, 325, 329, 394, 428, 472, 535
HapII	CCGG	2 cut(s)	326, 367
HgaI	GACGC	2 cut(s)	234, 379
HhaI	GCGC	1 cut(s)	237
Hin1I	GRCGYC	1 cut(s)	245
Hin1II	CATG	3 cut(s)	277, 500, 629
Hin6I	GCGC	1 cut(s)	235
HinP1I	GCGC	1 cut(s)	235
HindIII	AAGCTT	1 cut(s)	401
HinfI	GANTC	1 cut(s)	529
HpaII	CCGG	2 cut(s)	326, 367
HphI	GGTGA	2 cut(s)	133, 265
Hpy166II	GTNNAC	2 cut(s)	43, 348
Hpy188I	TCNGA	4 cut(s)	59, 121, 154, 528
Hpy188III	TCNNGA	3 cut(s)	72, 274, 572
Hpy8I	GTNNAC	2 cut(s)	43, 348
Hpy99I	CGWCG	8 cut(s)	125, 158, 220, 250, 253, 322, 335, 338
HpyAV	CCTTC	1 cut(s)	154
HpyCH4III	ACNGT	1 cut(s)	352
HpyCH4V	TGCA	1 cut(s)	509
HpyF10VI	GCNNNNNNNGC	6 cut(s)	87, 101, 379, 400, 434, 506
HpyF3I	CTNAG	1 cut(s)	86
Hsp92I	GRCGYC	1 cut(s)	245
Hsp92II	CATG	3 cut(s)	277, 500, 629
HspAI	GCGC	1 cut(s)	235
KroI	GCCGGC	1 cut(s)	325
KroNI	GCCGGC	1 cut(s)	327
Kzo9I	GATC	1 cut(s)	54
LguI	GCTCTTC	1 cut(s)	143
LmnI	GCTCC	2 cut(s)	59, 95
LpnPI	CCDG	7 cut(s)	41, 339, 380, 404, 437, 464, 497
Lsp1109I	GCAGC	1 cut(s)	121
LweI	GCATC	2 cut(s)	249, 345
MaeI	CTAG	1 cut(s)	615
MaeIII	GTNAC	2 cut(s)	253, 313
MalI	GATC	1 cut(s)	56
MboI	GATC	1 cut(s)	54
MboII	GAAGA	6 cut(s)	60, 123, 130, 176, 571, 574
MhlI	GDGCHC	2 cut(s)	79, 595
MluCI	AATT	2 cut(s)	7, 563
MlyI	GAGTC	1 cut(s)	523
MmeI	TCCRAC	2 cut(s)	144, 177
MnlI	CCTC	6 cut(s)	95, 160, 291, 315, 495, 534
MroNI	GCCGGC	1 cut(s)	325
MroXI	GAANNNNTTC	1 cut(s)	519
MseI	TTAA	1 cut(s)	567
MspI	CCGG	2 cut(s)	326, 367
MspR9I	CCNGG	1 cut(s)	452
MvaI	CCWGG	1 cut(s)	452
MvnI	CGCG	1 cut(s)	237
MwoI	GCNNNNNNNGC	6 cut(s)	87, 101, 379, 400, 434, 506
NaeI	GCCGGC	1 cut(s)	327
NdeII	GATC	1 cut(s)	54
NgoMIV	GCCGGC	1 cut(s)	325
NlaIII	CATG	3 cut(s)	277, 500, 629
NlaIV	GGNNCC	2 cut(s)	283, 395
NmeAIII	GCCGAG	2 cut(s)	130, 511
NmuCI	GTSAC	2 cut(s)	253, 313
NspI	RCATGY	1 cut(s)	500
PaeI	GCATGC	1 cut(s)	500
PaeR7I	CTCGAG	1 cut(s)	72
PagI	TCATGA	1 cut(s)	273
PciSI	GCTCTTC	1 cut(s)	143
PcsI	WCGNNNNNNNCGW	1 cut(s)	254
PdiI	GCCGGC	1 cut(s)	327
PdmI	GAANNNNTTC	1 cut(s)	519
PflFI	GACNNNGTC	1 cut(s)	280
PkrI	GCNGC	4 cut(s)	97, 111, 244, 436
PleI	GAGTC	1 cut(s)	523
PpsI	GAGTC	1 cut(s)	523
Psp124BI	GAGCTC	1 cut(s)	79
Psp6I	CCWGG	1 cut(s)	450
PspGI	CCWGG	1 cut(s)	450
PspN4I	GGNNCC	2 cut(s)	283, 395
PspPI	GGNCC	4 cut(s)	125, 282, 393, 471
PsyI	GACNNNGTC	1 cut(s)	280
RigI	GGCCGGCC	1 cut(s)	329
RsaI	GTAC	1 cut(s)	505
RsaNI	GTAC	1 cut(s)	504
SacI	GAGCTC	1 cut(s)	79
SapI	GCTCTTC	1 cut(s)	143
SaqAI	TTAA	1 cut(s)	567
SatI	GCNGC	4 cut(s)	96, 110, 243, 435
Sau3AI	GATC	1 cut(s)	54
Sau96I	GGNCC	4 cut(s)	125, 282, 393, 471
SchI	GAGTC	1 cut(s)	523
ScrFI	CCNGG	1 cut(s)	452
SduI	GDGCHC	2 cut(s)	79, 595
SetI	ASST	9 cut(s)	64, 79, 87, 92, 146, 302, 405, 418, 543
SfaNI	GCATC	2 cut(s)	249, 345
Sfr274I	CTCGAG	1 cut(s)	72
SinI	GGWCC	1 cut(s)	282
SlaI	CTCGAG	1 cut(s)	72
SmlI	CTYRAG	1 cut(s)	72
SmoI	CTYRAG	1 cut(s)	72
SpeI	ACTAGT	1 cut(s)	614
SphI	GCATGC	1 cut(s)	500
Sse9I	AATT	2 cut(s)	7, 563
SsiI	CCGC	6 cut(s)	93, 96, 102, 242, 434, 437
SspMI	CTAG	1 cut(s)	615
SstI	GAGCTC	1 cut(s)	79
StyD4I	CCNGG	1 cut(s)	450
TaaI	ACNGT	1 cut(s)	352
TaqI	TCGA	5 cut(s)	73, 218, 224, 360, 386
TasI	AATT	2 cut(s)	7, 563
TatI	WGTACW	1 cut(s)	503
TauI	GCSGC	3 cut(s)	98, 245, 437
Tru1I	TTAA	1 cut(s)	567
Tru9I	TTAA	1 cut(s)	567
TscAI	CASTG	1 cut(s)	516
TseFI	GTSAC	2 cut(s)	253, 313
TseI	GCWGC	1 cut(s)	109
Tsp45I	GTSAC	2 cut(s)	253, 313
TspDTI	ATGAA	3 cut(s)	262, 506, 572
TspGWI	ACGGA	1 cut(s)	171
TspRI	CASTG	1 cut(s)	516
Tth111I	GACNNNGTC	1 cut(s)	280
VpaK11BI	GGWCC	1 cut(s)	282
XapI	RAATTY	2 cut(s)	7, 563
XceI	RCATGY	1 cut(s)	500
XcmI	CCANNNNNNNNNTGG	1 cut(s)	458
XhoI	CTCGAG	1 cut(s)	72
XmnI	GAANNNNTTC	1 cut(s)	519
XspI	CTAG	1 cut(s)	615

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.