pycom17g03890

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Reverse (-)
2655663 .. 2659084
3422 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1920 bp
ATGGACGACGAGGCGCAGAAAATGGTGGCTCTGAAGAAGGCGTACGCGGAGATAATTCTGAACACGGCGAAAGAGGCGGCGGCGAGAGTAATGGCGTCGGAGCGCAAGGCTCTTCGGTACCAGCACGATCTGCAATTTACGAAAGGTGAAGCGCTTCGCGTGCTTTGCCGCTTAAAGCAAATGCTCGATTCCAAGACTAGTGACACGGAGATAACATGTTTGAGCCAACAACGAAAGATTGAAGAGCTTGAAGCGCAGCTCCAAGAGGCGGAGGATATCATAACTGATCTGAGATCAGAATTGAAACAAGTATGGAGTGAATTGGAGAGGCTAAATAACAACCAAGTGAAGCCTTTGGACGAACAAATCACGAGGGAAGATACATCATTTTCTGACAATCCAACACCTGAGCCCATCATACTATCTCCTTCAGGTTCAGGACATGAAACTGTTCCAACTTCAGGCCCAATGAACATCGAAGTAAATAGAGGTATTGAGCATAAGTTCTTTAATGAAATGAAACGAAGTAAGCAGTTAAGTGTTCCTGAATTGGATAAATTTTATGCCCCTGACTCTGACCTTGCCTCAATAATCATGAGACATAAGGAGCCAGAGCTGCTCAGGAATGGGTGTACACAGAGAATCCGTGCATTTGAAAGAAGCTTAATTGATGAGAAAGTGCTGCCTTCTGGATATGTAGACAATCACAATTCCCCCAGGAAGAATGAGTTGGTCATCAAAGAAATTGACGAGGAAGAAAGGTGTAATTCACCCTCTTTTAGCGACAACAGCATGGAAGTAGGTAACGGCTTATCTGTGGGAAAAACCAAAAGTCATGCTAAAGTACTCACATTACGCAGAAAAAAGACTCGATTTGGGAAATCCAAAACTTCACGCCGATGTCATCCTAGTGAGCTCGTGAAATCTCACCAACCAAATTTTGTTCAATCTCATTGCAGAATATATTCTGTGAATGGAAATGATGAAGAAGCTTGCATCCTGTCCTCTATCAAAACCGAGAATGTAGCCATGGCAAGAACTTCCAGTGGGTTGGAAGAAAGTTTGCAGCATAGTAGCTGCTATTTCATGGACAGAGTTAAGAATATTCCGAAGGGAAAAAGGAAAAGGAAAATGAAAAGTAAGGATGGCATTACAACCTCACTCACGAGTACTGATCAACCGTCTTCTGTTCTTTCCCGCTGCAGGACTTTTGATTATTTACATCATGGTGGTGTGAAATCTTGGGAAGATCAACCAAACACAACTGAAAATGAGGCTAAGATGAAGCCATTGCTTCGTCTGGATCCTGGGTTGACATTAATTGGAAGTCATGTGGATCCTTTATCAGGGTCAGCTAGTGTCAATGTGAGCATGAAGGGGATCAATAGATCTGGAGCTGTCCAAGATGCAGCAGACAAGGACATGGAGTTGATAGATGTGCCTGTGTTGATGACGGAAAGTGATGCTATGGAGAATTCAGAGGCTCCGAGTTCTGAACTTGGTTCTGCTGATGTATCACTAATGAACTCTGAGTTAAAAACTGTCAAAGTATCATTGATGAATTCTGAATTAATACATGTGAATGCATCATTGATGAAATCTGAATTAAAAGATGCAAGTGCATCATTGATGAGCTCTGAATTAAAAGACGCGAGAGCATCAGAACAATCAAATGGATCTCCTAGTCTTGTGGACAACAGCAGACTTCTCAAGTACACTTTCCAGAGGAAGCGCAAGAATTCCTCAAGAAACCCTGGTGAAACTGCTGCTTTTGAAGAGAACACTGCTAAGAGGAGGACGGAAGAGAAAGAATGTGTTGCACAACAGCCACAAACGACTGATGAATTATCTAGGGACAGCCGGCGACTAGTTCAGGTTGCTCGACAGCTCATATCGTTGTCTGGGAAGAGATGGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

640

Amino Acids

71.68

Weight (kDa)

7.22

Isoelectric Point (pI)

58.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 117
AccB1I GGYRCC 1 cut(s) 117
AccI GTMKAC 1 cut(s) 699
AccII CGCG 3 cut(s) 47, 159, 1652
AciI CCGC 6 cut(s) 47, 77, 80, 169, 269, 1198
AclWI GGATC 6 cut(s) 1298, 1311, 1331, 1344, 1388, 1684
AcsI RAATTY 5 cut(s) 557, 937, 1474, 1561, 1738
AcuI CTGAAG 3 cut(s) 53, 414, 444
AcyI GRCGYC 1 cut(s) 95
AfaI GTAC 6 cut(s) 44, 119, 634, 846, 1171, 1715
AfeI AGCGCT 1 cut(s) 153
AfiI CCNNNNNNNGG 4 cut(s) 268, 461, 1203, 1346
AflIII ACRYGT 2 cut(s) 215, 1576
AgsI TTSAA 6 cut(s) 242, 251, 304, 656, 947, 1775
AhlI ACTAGT 2 cut(s) 197, 1867
AjnI CCWGG 3 cut(s) 716, 1306, 1753
AjuI GAANNNNNNNTTGG 2 cut(s) 713, 745
Alw21I GWGCWC 2 cut(s) 918, 1637
Alw26I GTCTC 1 cut(s) 592
AlwI GGATC 6 cut(s) 1298, 1311, 1331, 1344, 1388, 1684
Aor51HI AGCGCT 1 cut(s) 153
AoxI GGCC 1 cut(s) 463
ApeKI GCWGC 8 cut(s) 256, 616, 682, 1066, 1077, 1200, 1409, 1766
ApoI RAATTY 5 cut(s) 557, 937, 1474, 1561, 1738
AseI ATTAAT 2 cut(s) 1319, 1571
Asp700I GAANNNNTTC 3 cut(s) 153, 450, 964
Asp718I GGTACC 1 cut(s) 117
AspLEI GCGC 5 cut(s) 16, 105, 154, 256, 1734
AspS9I GGNCC 1 cut(s) 464
AsuHPI GGTGA 4 cut(s) 158, 762, 920, 1769
BamHI GGATCC 2 cut(s) 1303, 1336
BanI GGYRCC 1 cut(s) 117
BanII GRGCYC 3 cut(s) 414, 918, 1637
BarI GAAGNNNNNNTAC 2 cut(s) 26, 58
BauI CACGAG 3 cut(s) 370, 917, 1165
BbsI GAAGAC 1 cut(s) 1176
Bbv12I GWGCWC 2 cut(s) 918, 1637
BbvI GCAGC 8 cut(s) 268, 603, 669, 1064, 1078, 1187, 1421, 1753
BccI CCATC 3 cut(s) 422, 1139, 1905
BceAI ACGGC 2 cut(s) 81, 823
BciT130I CCWGG 3 cut(s) 718, 1308, 1755
BclI TGATCA 1 cut(s) 1174
BcoDI GTCTC 1 cut(s) 592
BcuI ACTAGT 2 cut(s) 197, 1867
BfaI CTAG 6 cut(s) 198, 909, 1356, 1683, 1851, 1868
BfmI CTRYAG 1 cut(s) 1201
BfoI RGCGCY 1 cut(s) 155
BglII AGATCT 1 cut(s) 1388
BmcAI AGTACT 2 cut(s) 846, 1171
Bme1390I CCNGG 3 cut(s) 718, 1308, 1755
BmgT120I GGNCC 1 cut(s) 464
BmiI GGNNCC 5 cut(s) 119, 609, 1305, 1338, 1485
BmrFI CCNGG 3 cut(s) 718, 1308, 1755
BmsI GCATC 7 cut(s) 1005, 1396, 1453, 1595, 1603, 1631, 1667
BpiI GAAGAC 1 cut(s) 1176
BpmI CTGGAG 1 cut(s) 1413
Bpu10I CCTNAGC 2 cut(s) 408, 620
BpuEI CTTGAG 2 cut(s) 1694, 1729
BsaHI GRCGYC 1 cut(s) 95
BsaJI CCNNGG 4 cut(s) 716, 1029, 1307, 1753
Bsc4I CCNNNNNNNGG 4 cut(s) 268, 461, 1203, 1346
Bse118I RCCGGY 1 cut(s) 1860
Bse1I ACTGG 1 cut(s) 1044
Bse3DI GCAATG 2 cut(s) 952, 1289
BseBI CCWGG 3 cut(s) 718, 1308, 1755
BseDI CCNNGG 4 cut(s) 716, 1029, 1307, 1753
BseGI GGATG 3 cut(s) 904, 996, 1150
BseLI CCNNNNNNNGG 4 cut(s) 268, 461, 1203, 1346
BseMI GCAATG 2 cut(s) 952, 1289
BseMII CTCAG 4 cut(s) 281, 399, 634, 1521
BseNI ACTGG 1 cut(s) 1044
BseRI GAGGAG 1 cut(s) 1807
BseXI GCAGC 8 cut(s) 268, 603, 669, 1064, 1078, 1187, 1421, 1753
Bsh1236I CGCG 3 cut(s) 47, 159, 1652
BshFI GGCC 1 cut(s) 465
BshNI GGYRCC 1 cut(s) 117
BsiHKAI GWGCWC 2 cut(s) 918, 1637
BsiSI CCGG 1 cut(s) 1861
BsiWI CGTACG 1 cut(s) 42
BslFI GGGAC 1 cut(s) 1868
BslI CCNNNNNNNGG 4 cut(s) 268, 461, 1203, 1346
BsmAI GTCTC 1 cut(s) 592
BsmFI GGGAC 1 cut(s) 1868
BsmI GAATGC 1 cut(s) 1588
BsnI GGCC 1 cut(s) 465
Bsp1286I GDGCHC 3 cut(s) 414, 918, 1637
Bsp1407I TGTACA 1 cut(s) 632
Bsp19I CCATGG 1 cut(s) 1029
BspACI CCGC 6 cut(s) 47, 77, 80, 169, 269, 1198
BspANI GGCC 1 cut(s) 465
BspCNI CTCAG 4 cut(s) 282, 400, 633, 1522
BspFNI CGCG 3 cut(s) 47, 159, 1652
BspHI TCATGA 1 cut(s) 594
BspLI GGNNCC 5 cut(s) 119, 609, 1305, 1338, 1485
BspMAI CTGCAG 1 cut(s) 1205
BspPI GGATC 6 cut(s) 1298, 1311, 1331, 1344, 1388, 1684
BspQI GCTCTTC 2 cut(s) 117, 237
BspT107I GGYRCC 1 cut(s) 117
BsrDI GCAATG 2 cut(s) 952, 1289
BsrFI RCCGGY 1 cut(s) 1860
BsrGI TGTACA 1 cut(s) 632
BsrI ACTGG 1 cut(s) 1044
BssAI RCCGGY 1 cut(s) 1860
BssECI CCNNGG 4 cut(s) 716, 1029, 1307, 1753
BssNI GRCGYC 1 cut(s) 95
BssSI CACGAG 3 cut(s) 370, 917, 1165
BssT1I CCWWGG 1 cut(s) 1029
Bst2BI CACGAG 3 cut(s) 370, 917, 1165
Bst2UI CCWGG 3 cut(s) 718, 1308, 1755
Bst4CI ACNGT 3 cut(s) 451, 1182, 1543
Bst6I CTCTTC 5 cut(s) 117, 237, 1770, 1797, 1901
BstACI GRCGYC 1 cut(s) 95
BstAPI GCANNNNNTGC 1 cut(s) 130
BstAUI TGTACA 1 cut(s) 632
BstC8I GCNNGC 3 cut(s) 161, 994, 1862
BstDEI CTNAG 6 cut(s) 290, 408, 620, 1278, 1530, 1788
BstDSI CCRYGG 1 cut(s) 1029
BstENI CCTNNNNNAGG 1 cut(s) 1344
BstF5I GGATG 3 cut(s) 904, 996, 1150
BstFNI CGCG 3 cut(s) 47, 159, 1652
BstH2I RGCGCY 1 cut(s) 155
BstHHI GCGC 5 cut(s) 16, 105, 154, 256, 1734
BstMAI GTCTC 1 cut(s) 592
BstMWI GCNNNNNNNGC 7 cut(s) 74, 130, 160, 165, 253, 616, 789
BstNI CCWGG 3 cut(s) 718, 1308, 1755
BstNSI RCATGY 2 cut(s) 219, 1580
BstSCI CCNGG 3 cut(s) 716, 1306, 1753
BstSFI CTRYAG 1 cut(s) 1201
BstUI CGCG 3 cut(s) 47, 159, 1652
BstV1I GCAGC 8 cut(s) 268, 603, 669, 1064, 1078, 1187, 1421, 1753
BstV2I GAAGAC 1 cut(s) 1176
BstX2I RGATCY 4 cut(s) 1303, 1336, 1388, 1676
BstXI CCANNNNNNTGG 1 cut(s) 1051
BstYI RGATCY 4 cut(s) 1303, 1336, 1388, 1676
BsuRI GGCC 1 cut(s) 465
BtgI CCRYGG 1 cut(s) 1029
BtsCI GGATG 3 cut(s) 904, 996, 1150
BtsI GCAGTG 1 cut(s) 1782
BtsIMutI CAGTG 2 cut(s) 1051, 1782
Cac8I GCNNGC 3 cut(s) 161, 994, 1862
CciI TCATGA 1 cut(s) 594
CfoI GCGC 5 cut(s) 16, 105, 154, 256, 1734
Cfr10I RCCGGY 1 cut(s) 1860
Cfr13I GGNCC 1 cut(s) 464
CseI GACGC 2 cut(s) 84, 1658
Csp6I GTAC 6 cut(s) 43, 118, 633, 845, 1170, 1714
CviQI GTAC 6 cut(s) 43, 118, 633, 845, 1170, 1714
DdeI CTNAG 6 cut(s) 290, 408, 620, 1278, 1530, 1788
Eam1104I CTCTTC 5 cut(s) 117, 237, 1770, 1797, 1901
EarI CTCTTC 5 cut(s) 117, 237, 1770, 1797, 1901
EciI GGCGGA 1 cut(s) 284
Ecl136II GAGCTC 2 cut(s) 916, 1635
Eco130I CCWWGG 1 cut(s) 1029
Eco24I GRGCYC 3 cut(s) 414, 918, 1637
Eco32I GATATC 1 cut(s) 277
Eco47III AGCGCT 1 cut(s) 153
Eco53kI GAGCTC 2 cut(s) 916, 1635
Eco57I CTGAAG 3 cut(s) 53, 414, 444
EcoICRI GAGCTC 2 cut(s) 916, 1635
EcoNI CCTNNNNNAGG 1 cut(s) 1344
EcoRI GAATTC 3 cut(s) 1474, 1561, 1738
EcoRII CCWGG 3 cut(s) 716, 1306, 1753
EcoRV GATATC 1 cut(s) 277
EcoT14I CCWWGG 1 cut(s) 1029
EcoT22I ATGCAT 1 cut(s) 1588
EcoT38I GRGCYC 3 cut(s) 414, 918, 1637
ErhI CCWWGG 1 cut(s) 1029
FaqI GGGAC 1 cut(s) 1868
FauI CCCGC 1 cut(s) 1205
FbaI TGATCA 1 cut(s) 1174
FblI GTMKAC 1 cut(s) 699
FokI GGATG 3 cut(s) 891, 983, 1157
FriOI GRGCYC 3 cut(s) 414, 918, 1637
FspBI CTAG 6 cut(s) 198, 909, 1356, 1683, 1851, 1868
GlaI GCGC 5 cut(s) 15, 104, 153, 255, 1733
GsuI CTGGAG 1 cut(s) 1413
HaeII RGCGCY 1 cut(s) 155
HaeIII GGCC 1 cut(s) 465
HapII CCGG 1 cut(s) 1861
HgaI GACGC 2 cut(s) 84, 1658
HhaI GCGC 5 cut(s) 16, 105, 154, 256, 1734
Hin1I GRCGYC 1 cut(s) 95
Hin6I GCGC 5 cut(s) 14, 103, 152, 254, 1732
HinP1I GCGC 5 cut(s) 14, 103, 152, 254, 1732
HincII GTYRAC 1 cut(s) 1314
HindII GTYRAC 1 cut(s) 1314
HindIII AAGCTT 2 cut(s) 661, 990
HinfI GANTC 4 cut(s) 188, 572, 642, 868
HpaII CCGG 1 cut(s) 1861
HphI GGTGA 4 cut(s) 158, 762, 920, 1769
Hpy166II GTNNAC 6 cut(s) 633, 635, 700, 1314, 1693, 1716
Hpy8I GTNNAC 6 cut(s) 633, 635, 700, 1314, 1693, 1716
Hpy99I CGWCG 2 cut(s) 11, 100
HpyAV CCTTC 5 cut(s) 31, 438, 696, 1105, 1369
HpyCH4III ACNGT 3 cut(s) 451, 1182, 1543
HpyF10VI GCNNNNNNNGC 7 cut(s) 74, 130, 160, 165, 253, 616, 789
HpyF3I CTNAG 6 cut(s) 290, 408, 620, 1278, 1530, 1788
Hsp92I GRCGYC 1 cut(s) 95
HspAI GCGC 5 cut(s) 14, 103, 152, 254, 1732
KpnI GGTACC 1 cut(s) 121
KroI GCCGGC 1 cut(s) 1860
KroNI GCCGGC 1 cut(s) 1862
Ksp22I TGATCA 1 cut(s) 1174
LguI GCTCTTC 2 cut(s) 117, 237
LmnI GCTCC 5 cut(s) 100, 264, 607, 1394, 1489
Lsp1109I GCAGC 8 cut(s) 268, 603, 669, 1064, 1078, 1187, 1421, 1753
LweI GCATC 7 cut(s) 1005, 1396, 1453, 1595, 1603, 1631, 1667
MaeI CTAG 6 cut(s) 198, 909, 1356, 1683, 1851, 1868
MaeIII GTNAC 2 cut(s) 200, 803
MflI RGATCY 4 cut(s) 1303, 1336, 1388, 1676
MhlI GDGCHC 3 cut(s) 414, 918, 1637
MlyI GAGTC 2 cut(s) 566, 862
MmeI TCCRAC 4 cut(s) 78, 425, 479, 1032
Mph1103I ATGCAT 1 cut(s) 1588
MroNI GCCGGC 1 cut(s) 1860
MroXI GAANNNNTTC 3 cut(s) 153, 450, 964
MslI CAYNNNNRTG 5 cut(s) 898, 909, 1227, 1230, 1581
MspA1I CMGCKG 1 cut(s) 1200
MspI CCGG 1 cut(s) 1861
MspR9I CCNGG 3 cut(s) 718, 1308, 1755
Mva1269I GAATGC 1 cut(s) 1588
MvaI CCWGG 3 cut(s) 718, 1308, 1755
MvnI CGCG 3 cut(s) 47, 159, 1652
MwoI GCNNNNNNNGC 7 cut(s) 74, 130, 160, 165, 253, 616, 789
NaeI GCCGGC 1 cut(s) 1862
NcoI CCATGG 1 cut(s) 1029
NgoMIV GCCGGC 1 cut(s) 1860
NlaIV GGNNCC 5 cut(s) 119, 609, 1305, 1338, 1485
NmuCI GTSAC 1 cut(s) 200
NsiI ATGCAT 1 cut(s) 1588
NspI RCATGY 2 cut(s) 219, 1580
PagI TCATGA 1 cut(s) 594
PciI ACATGT 2 cut(s) 215, 1576
PciSI GCTCTTC 2 cut(s) 117, 237
PctI GAATGC 1 cut(s) 1588
PdiI GCCGGC 1 cut(s) 1862
PdmI GAANNNNTTC 3 cut(s) 153, 450, 964
PfeI GAWTC 2 cut(s) 188, 642
Pfl23II CGTACG 1 cut(s) 42
PleI GAGTC 2 cut(s) 566, 862
PpsI GAGTC 2 cut(s) 566, 862
PscI ACATGT 2 cut(s) 215, 1576
PshBI ATTAAT 2 cut(s) 1319, 1571
Psp124BI GAGCTC 2 cut(s) 918, 1637
Psp6I CCWGG 3 cut(s) 716, 1306, 1753
PspGI CCWGG 3 cut(s) 716, 1306, 1753
PspLI CGTACG 1 cut(s) 42
PspN4I GGNNCC 5 cut(s) 119, 609, 1305, 1338, 1485
PspPI GGNCC 1 cut(s) 464
PstI CTGCAG 1 cut(s) 1205
PsuI RGATCY 4 cut(s) 1303, 1336, 1388, 1676
RsaI GTAC 6 cut(s) 44, 119, 634, 846, 1171, 1715
RsaNI GTAC 6 cut(s) 43, 118, 633, 845, 1170, 1714
RseI CAYNNNNRTG 5 cut(s) 898, 909, 1227, 1230, 1581
SacI GAGCTC 2 cut(s) 918, 1637
SapI GCTCTTC 2 cut(s) 117, 237
Sau96I GGNCC 1 cut(s) 464
ScaI AGTACT 2 cut(s) 846, 1171
SchI GAGTC 2 cut(s) 566, 862
ScrFI CCNGG 3 cut(s) 718, 1308, 1755
SduI GDGCHC 3 cut(s) 414, 918, 1637
SfaNI GCATC 7 cut(s) 1005, 1396, 1453, 1595, 1603, 1631, 1667
SfcI CTRYAG 1 cut(s) 1201
SmiMI CAYNNNNRTG 5 cut(s) 898, 909, 1227, 1230, 1581
SmlI CTYRAG 2 cut(s) 1709, 1744
SmoI CTYRAG 2 cut(s) 1709, 1744
SpeI ACTAGT 2 cut(s) 197, 1867
SsiI CCGC 6 cut(s) 47, 77, 80, 169, 269, 1198
SspI AATATT 1 cut(s) 1105
SspMI CTAG 6 cut(s) 198, 909, 1356, 1683, 1851, 1868
SstI GAGCTC 2 cut(s) 918, 1637
StyD4I CCNGG 3 cut(s) 716, 1306, 1753
StyI CCWWGG 1 cut(s) 1029
TaaI ACNGT 3 cut(s) 451, 1182, 1543
TaqI TCGA 4 cut(s) 186, 477, 871, 1882
TatI WGTACW 4 cut(s) 632, 844, 1169, 1713
TauI GCSGC 3 cut(s) 80, 83, 171
TfiI GAWTC 2 cut(s) 188, 642
TscAI CASTG 2 cut(s) 1051, 1789
TseFI GTSAC 1 cut(s) 200
TseI GCWGC 8 cut(s) 256, 616, 682, 1066, 1077, 1200, 1409, 1766
Tsp45I GTSAC 1 cut(s) 200
TspGWI ACGGA 4 cut(s) 221, 635, 1469, 1814
TspRI CASTG 2 cut(s) 1051, 1789
VspI ATTAAT 2 cut(s) 1319, 1571
XagI CCTNNNNNAGG 1 cut(s) 1344
XapI RAATTY 5 cut(s) 557, 937, 1474, 1561, 1738
XceI RCATGY 2 cut(s) 219, 1580
XmiI GTMKAC 1 cut(s) 699
XmnI GAANNNNTTC 3 cut(s) 153, 450, 964
XspI CTAG 6 cut(s) 198, 909, 1356, 1683, 1851, 1868
ZrmI AGTACT 2 cut(s) 846, 1171
Zsp2I ATGCAT 1 cut(s) 1588
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.