Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0005254

Physical Location & Seq

Genomic Coordinates Reverse (-)

4176695 .. 4179798

Gene Structure 3104 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGATGCCGCTAACGTGGTGTTCTGCGCCACCGTCGGAAGCGGTGGTGGGTACGTTAATGGCAAAGAAAGATGGAAGCTTGAGGAGTGTGGTGATCAATGTGACGGGTGCAGGCACAAATAATGGGTTCCCATCGTTTCTTCCAAAGGAGGTTGAGAAAATTAAGGACCCATATGCCAGAAAGTTGGCTCAGAGGATGGAGAGGCTCCCTGTGTCGATTGGGTCGTCGGAAAGTTATATCATGAGTAGTTGTGTAAGGCCTCCAAAACAAAGTGAGATCAATCCGGTGGTTCTCCTCCATTGCTTTGACAGTTCTTGTTTAGAATGGAGGTGCGCGTACCCCCTGCTTGAAGAGGCCGGATTGGAGGCTTGGGCTGTTGATGTTCTTGGGTGGGGCTTCTCTGATTTAGAAAGGTGTCCACCATGCAGCGCGGCATCCAAGCGGCATCACCTCTATCAGTTTTGGAAGTCCTACATCAGAAGACCGATGGTATTAGTTGGACCAAGCCTCGGTGGTTCTGTTGCAATTGACTTTGCATACCACTATCCAGTAGCTGTTGAAAAGCTGGTTTTAATCAATGCAAGCGTCTACGCAGAAGGCACCGGAGACATGGCAAAGTTACCTAAAGCTGTGGCCTACGCTGGGGTTTCTTTATTGAAGAGCACCCCTCTACGCTTCTACGCAAATATGCTGGCCTTCAACGGCATTTCATTAGCTACAACCTTTGATTGGACTAATGTCGGACGCTTACACTGTCTGCTACCTTGGTGGAAAGATGCAATGGTCAGTTTTATGACTAGCGGGGGCTATAATGTCGTTTCCCAAATAAAACAGGTGAAGCAGAAAGTACTAGTGATTTGCAGCGAGCAAGACAATATTATCAGCTACAAACAAATATTGAGGCTGCGTTGTGAGCTTCCGTATGCAATCATGCGGCTAATACCGGATAGCGGTCATCTCCCTCATGTTGATAATCCCGCCTCCGTTGCAAAACTAATCGCAGGGTTTGCTCGGAACGGTCGTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6 Hydrolase_4

Protein Analysis

343

Amino Acids

37.78

Weight (kDa)

8.97

Isoelectric Point (pI)

45.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	94 - 326	5.8e-12	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	96 - 331	6.7e-16	Alpha/beta hydrolase family
Hydrolase_4	PF12146	96 - 298	5.3e-08	Serine aminopeptidase, S33

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005254)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39220 AT5G39220
fragaria_vesca	FvH4_6g46920 FvH4_6g46920 FvH4_6g46920 FvH4_6g46920
malus_domestica	MD09G1066200.v1.1 MD17G1058900.v1.1 MD17G1059000.v1.1 MD17G1059300.v1.1
prunus_persica	Prupe.3G255300_v2.0.a1 Prupe.3G255300_v2.0.a1 Prupe.3G255300_v2.0.a1 Prupe.3G255300_v2.0.a1
pyrus_communis	pycom17g05920
rosa_chinensis	RchiOBHm_Chr2g0165891
rosa_laevigata	RLG00000021568
rosa_multiflora	Rmu_sc0006218.1_g000009
rosa_roxburghii	Rroxscaffold_2G00085330
rosa_rugosa	Rorug02G0518900 Rorug02G0519000 Rorug02G0519100
rosa_samantha	Rh2AG584600 Rh2BG596400 Rh2CG567300 Rh2DG606300 Rh2DG606400 Rh2DG606500
rosa_wichuraiana	Rw2G048740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	599
AccI	GTMKAC	1 cut(s)	588
AccII	CGCG	2 cut(s)	335, 431
AciI	CCGC	8 cut(s)	8, 41, 431, 442, 801, 934, 951, 978
AfaI	GTAC	3 cut(s)	52, 338, 849
AfiI	CCNNNNNNNGG	4 cut(s)	509, 642, 729, 950
AgsI	TTSAA	4 cut(s)	350, 560, 658, 700
AhlI	ACTAGT	1 cut(s)	850
AluBI	AGCT	7 cut(s)	78, 554, 565, 629, 716, 885, 916
AluI	AGCT	7 cut(s)	78, 554, 565, 629, 716, 885, 916
Alw21I	GWGCWC	1 cut(s)	665
Alw26I	GTCTC	1 cut(s)	600
AlwNI	CAGNNNCTG	1 cut(s)	554
AoxI	GGCC	4 cut(s)	257, 354, 633, 693
ApeKI	GCWGC	3 cut(s)	426, 861, 904
AspLEI	GCGC	3 cut(s)	28, 335, 431
AspS9I	GGNCC	2 cut(s)	166, 500
AsuHPI	GGTGA	3 cut(s)	103, 440, 847
AvaII	GGWCC	2 cut(s)	166, 500
BanI	GGYRCC	1 cut(s)	599
BbsI	GAAGAC	1 cut(s)	487
Bbv12I	GWGCWC	1 cut(s)	665
BbvI	GCAGC	3 cut(s)	438, 873, 891
BccI	CCATC	4 cut(s)	65, 139, 190, 481
BceAI	ACGGC	1 cut(s)	718
BclI	TGATCA	1 cut(s)	93
BcoDI	GTCTC	1 cut(s)	600
BcuI	ACTAGT	1 cut(s)	850
BfaI	CTAG	2 cut(s)	798, 851
BisI	GCNGC	7 cut(s)	8, 427, 432, 443, 862, 905, 935
BlsI	GCNGC	7 cut(s)	9, 428, 433, 444, 863, 906, 936
BmcAI	AGTACT	1 cut(s)	849
Bme18I	GGWCC	2 cut(s)	166, 500
BmgT120I	GGNCC	2 cut(s)	166, 500
BmiI	GGNNCC	4 cut(s)	128, 168, 206, 601
BmsI	GCATC	3 cut(s)	443, 454, 766
BoxI	GACNNNNGTC	1 cut(s)	737
BpiI	GAAGAC	1 cut(s)	487
BplI	GAGNNNNNCTC	2 cut(s)	652, 684
BpuEI	CTTGAG	1 cut(s)	100
BsaJI	CCNNGG	2 cut(s)	508, 764
BsaWI	WCCGGW	3 cut(s)	283, 602, 943
Bsc4I	CCNNNNNNNGG	4 cut(s)	509, 642, 729, 950
Bse1I	ACTGG	1 cut(s)	548
Bse3DI	GCAATG	2 cut(s)	298, 786
BseDI	CCNNGG	2 cut(s)	508, 764
BseGI	GGATG	2 cut(s)	201, 434
BseLI	CCNNNNNNNGG	4 cut(s)	509, 642, 729, 950
BseMI	GCAATG	2 cut(s)	298, 786
BseMII	CTCAG	1 cut(s)	203
BseNI	ACTGG	1 cut(s)	548
BseRI	GAGGAG	2 cut(s)	97, 284
BseXI	GCAGC	3 cut(s)	438, 873, 891
BseYI	CCCAGC	1 cut(s)	641
BsgI	GTGCAG	1 cut(s)	129
Bsh1236I	CGCG	2 cut(s)	335, 431
Bsh1285I	CGRYCG	1 cut(s)	1021
BshFI	GGCC	4 cut(s)	259, 356, 635, 695
BshNI	GGYRCC	1 cut(s)	599
BsiEI	CGRYCG	1 cut(s)	1021
BsiHKAI	GWGCWC	1 cut(s)	665
BsiSI	CCGG	4 cut(s)	284, 357, 603, 944
BslI	CCNNNNNNNGG	4 cut(s)	509, 642, 729, 950
BsmAI	GTCTC	1 cut(s)	600
BsnI	GGCC	4 cut(s)	259, 356, 635, 695
Bsp1286I	GDGCHC	1 cut(s)	665
Bsp143I	GATC	2 cut(s)	93, 276
BspACI	CCGC	8 cut(s)	8, 41, 431, 442, 801, 934, 951, 978
BspANI	GGCC	4 cut(s)	259, 356, 635, 695
BspCNI	CTCAG	1 cut(s)	202
BspFNI	CGCG	2 cut(s)	335, 431
BspHI	TCATGA	1 cut(s)	240
BspLI	GGNNCC	4 cut(s)	128, 168, 206, 601
BspQI	GCTCTTC	1 cut(s)	653
BspT107I	GGYRCC	1 cut(s)	599
BsrDI	GCAATG	2 cut(s)	298, 786
BsrI	ACTGG	1 cut(s)	548
BssECI	CCNNGG	2 cut(s)	508, 764
BssMI	GATC	2 cut(s)	93, 276
BssT1I	CCWWGG	1 cut(s)	764
Bst4CI	ACNGT	4 cut(s)	33, 311, 755, 1019
Bst6I	CTCTTC	2 cut(s)	345, 653
BstAPI	GCANNNNNTGC	1 cut(s)	1007
BstC8I	GCNNGC	4 cut(s)	112, 583, 693, 866
BstDEI	CTNAG	1 cut(s)	189
BstF5I	GGATG	2 cut(s)	201, 434
BstFNI	CGCG	2 cut(s)	335, 431
BstHHI	GCGC	3 cut(s)	28, 335, 431
BstKTI	GATC	2 cut(s)	96, 279
BstMAI	GTCTC	1 cut(s)	600
BstMBI	GATC	2 cut(s)	93, 276
BstMCI	CGRYCG	1 cut(s)	1021
BstMWI	GCNNNNNNNGC	3 cut(s)	913, 986, 1007
BstPAI	GACNNNNGTC	1 cut(s)	737
BstUI	CGCG	2 cut(s)	335, 431
BstV1I	GCAGC	3 cut(s)	438, 873, 891
BstV2I	GAAGAC	1 cut(s)	487
BstXI	CCANNNNNNTGG	1 cut(s)	184
BsuRI	GGCC	4 cut(s)	259, 356, 635, 695
BtsCI	GGATG	2 cut(s)	201, 434
BtsIMutI	CAGTG	1 cut(s)	751
Cac8I	GCNNGC	4 cut(s)	112, 583, 693, 866
CaiI	CAGNNNCTG	1 cut(s)	554
CciI	TCATGA	1 cut(s)	240
CfoI	GCGC	3 cut(s)	28, 335, 431
Cfr13I	GGNCC	2 cut(s)	166, 500
CseI	GACGC	2 cut(s)	574, 753
Csp6I	GTAC	3 cut(s)	51, 337, 848
CviAII	CATG	5 cut(s)	241, 423, 610, 931, 965
CviQI	GTAC	3 cut(s)	51, 337, 848
DdeI	CTNAG	1 cut(s)	189
DpnI	GATC	2 cut(s)	95, 278
DpnII	GATC	2 cut(s)	93, 276
Eam1104I	CTCTTC	2 cut(s)	345, 653
EarI	CTCTTC	2 cut(s)	345, 653
Eco130I	CCWWGG	1 cut(s)	764
Eco147I	AGGCCT	1 cut(s)	259
Eco47I	GGWCC	2 cut(s)	166, 500
EcoO109I	RGGNCCY	1 cut(s)	166
EcoT14I	CCWWGG	1 cut(s)	764
ErhI	CCWWGG	1 cut(s)	764
FaeI	CATG	5 cut(s)	244, 426, 613, 934, 968
FatI	CATG	5 cut(s)	240, 422, 609, 930, 964
FauI	CCCGC	2 cut(s)	794, 985
FauNDI	CATATG	1 cut(s)	172
FbaI	TGATCA	1 cut(s)	93
FblI	GTMKAC	1 cut(s)	588
Fnu4HI	GCNGC	7 cut(s)	8, 427, 432, 443, 862, 905, 935
FokI	GGATG	2 cut(s)	208, 421
Fsp4HI	GCNGC	7 cut(s)	8, 427, 432, 443, 862, 905, 935
FspBI	CTAG	2 cut(s)	798, 851
GlaI	GCGC	3 cut(s)	27, 334, 430
GluI	GCNGC	7 cut(s)	8, 427, 432, 443, 862, 905, 935
GsaI	CCCAGC	1 cut(s)	645
HaeIII	GGCC	4 cut(s)	259, 356, 635, 695
HapII	CCGG	4 cut(s)	284, 357, 603, 944
HgaI	GACGC	2 cut(s)	574, 753
HhaI	GCGC	3 cut(s)	28, 335, 431
Hin1II	CATG	5 cut(s)	244, 426, 613, 934, 968
Hin6I	GCGC	3 cut(s)	26, 333, 429
HinP1I	GCGC	3 cut(s)	26, 333, 429
HindIII	AAGCTT	1 cut(s)	76
HpaII	CCGG	4 cut(s)	284, 357, 603, 944
HphI	GGTGA	3 cut(s)	103, 440, 847
Hpy166II	GTNNAC	2 cut(s)	419, 589
Hpy188I	TCNGA	7 cut(s)	37, 192, 229, 403, 479, 743, 1014
Hpy188III	TCNNGA	1 cut(s)	241
Hpy8I	GTNNAC	2 cut(s)	419, 589
Hpy99I	CGWCG	2 cut(s)	37, 229
HpyAV	CCTTC	2 cut(s)	590, 706
HpyCH4III	ACNGT	4 cut(s)	33, 311, 755, 1019
HpyCH4IV	ACGT	2 cut(s)	14, 53
HpyCH4V	TGCA	9 cut(s)	110, 426, 524, 536, 581, 779, 861, 926, 989
HpyF10VI	GCNNNNNNNGC	3 cut(s)	913, 986, 1007
HpyF3I	CTNAG	1 cut(s)	189
HpySE526I	ACGT	2 cut(s)	14, 53
Hsp92II	CATG	5 cut(s)	244, 426, 613, 934, 968
HspAI	GCGC	3 cut(s)	26, 333, 429
Ksp22I	TGATCA	1 cut(s)	93
Kzo9I	GATC	2 cut(s)	93, 276
LguI	GCTCTTC	1 cut(s)	653
LmnI	GCTCC	1 cut(s)	210
Lsp1109I	GCAGC	3 cut(s)	438, 873, 891
LweI	GCATC	3 cut(s)	443, 454, 766
MaeI	CTAG	2 cut(s)	798, 851
MaeII	ACGT	2 cut(s)	14, 53
MaeIII	GTNAC	2 cut(s)	100, 618
MalI	GATC	2 cut(s)	95, 278
MboI	GATC	2 cut(s)	93, 276
MboII	GAAGA	4 cut(s)	131, 362, 492, 670
MfeI	CAATTG	1 cut(s)	525
MhlI	GDGCHC	1 cut(s)	665
MluCI	AATT	2 cut(s)	159, 525
MmeI	TCCRAC	4 cut(s)	15, 207, 478, 721
MseI	TTAA	3 cut(s)	56, 162, 572
MspI	CCGG	4 cut(s)	284, 357, 603, 944
MunI	CAATTG	1 cut(s)	525
MvnI	CGCG	2 cut(s)	335, 431
MwoI	GCNNNNNNNGC	3 cut(s)	913, 986, 1007
NdeI	CATATG	1 cut(s)	172
NdeII	GATC	2 cut(s)	93, 276
NlaIII	CATG	5 cut(s)	244, 426, 613, 934, 968
NlaIV	GGNNCC	4 cut(s)	128, 168, 206, 601
NmuCI	GTSAC	1 cut(s)	100
PagI	TCATGA	1 cut(s)	240
PceI	AGGCCT	1 cut(s)	259
PciSI	GCTCTTC	1 cut(s)	653
PcsI	WCGNNNNNNNCGW	2 cut(s)	221, 1018
PkrI	GCNGC	7 cut(s)	9, 428, 433, 444, 863, 906, 936
PpuMI	RGGWCCY	1 cut(s)	166
PshAI	GACNNNNGTC	1 cut(s)	737
Psp5II	RGGWCCY	1 cut(s)	166
PspFI	CCCAGC	1 cut(s)	641
PspN4I	GGNNCC	4 cut(s)	128, 168, 206, 601
PspPI	GGNCC	2 cut(s)	166, 500
PspPPI	RGGWCCY	1 cut(s)	166
PstNI	CAGNNNCTG	1 cut(s)	554
RsaI	GTAC	3 cut(s)	52, 338, 849
RsaNI	GTAC	3 cut(s)	51, 337, 848
SapI	GCTCTTC	1 cut(s)	653
SaqAI	TTAA	3 cut(s)	56, 162, 572
SatI	GCNGC	7 cut(s)	8, 427, 432, 443, 862, 905, 935
Sau3AI	GATC	2 cut(s)	93, 276
Sau96I	GGNCC	2 cut(s)	166, 500
ScaI	AGTACT	1 cut(s)	849
SduI	GDGCHC	1 cut(s)	665
SfaNI	GCATC	3 cut(s)	443, 454, 766
SinI	GGWCC	2 cut(s)	166, 500
SmlI	CTYRAG	1 cut(s)	79
SmoI	CTYRAG	1 cut(s)	79
SpeI	ACTAGT	1 cut(s)	850
Sse9I	AATT	2 cut(s)	159, 525
SseBI	AGGCCT	1 cut(s)	259
SsiI	CCGC	8 cut(s)	8, 41, 431, 442, 801, 934, 951, 978
SspI	AATATT	2 cut(s)	877, 897
SspMI	CTAG	2 cut(s)	798, 851
StuI	AGGCCT	1 cut(s)	259
StyI	CCWWGG	1 cut(s)	764
TaaI	ACNGT	4 cut(s)	33, 311, 755, 1019
TaiI	ACGT	2 cut(s)	17, 56
TaqI	TCGA	1 cut(s)	215
TaqII	GACCGA	1 cut(s)	499
TasI	AATT	2 cut(s)	159, 525
TatI	WGTACW	1 cut(s)	847
TauI	GCSGC	4 cut(s)	10, 434, 445, 937
Tru1I	TTAA	3 cut(s)	56, 162, 572
Tru9I	TTAA	3 cut(s)	56, 162, 572
TscAI	CASTG	1 cut(s)	758
TseFI	GTSAC	1 cut(s)	100
TseI	GCWGC	3 cut(s)	426, 861, 904
Tsp45I	GTSAC	1 cut(s)	100
TspDTI	ATGAA	1 cut(s)	699
TspGWI	ACGGA	2 cut(s)	909, 973
TspRI	CASTG	1 cut(s)	758
VpaK11BI	GGWCC	2 cut(s)	166, 500
XmiI	GTMKAC	1 cut(s)	588
XspI	CTAG	2 cut(s)	798, 851
ZrmI	AGTACT	1 cut(s)	849

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.