pycom17g09700

homeobox protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0002529
Physical Location & Seq
Reverse (-)
7398788 .. 7400963
2176 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1011 bp
ATGAAAGGAGGAATCAGTCGTAACAGTGACAGTTTAGGGTTTCTGGATTCTTCTTTAGCCGCTGCCCTAATGAATTCAGAAACCAGAACTACTAGTAGCAGCAGTTATAGTAAGCAGTTTCTTTCTCTACCTTTGATCAGCAATATTCCCAACTTACAAAGCCATCCGCATGAGACTATTGATCAGGAGATGAGCGTGAAAGCTAAGATTATGGCTCATCCTCTCTTCCCTCAACTCTTGTCTGCCTATGTCAATTGCTTAAAGGTTGGGGCACCTGCTGAAGTGGTGGCTAGGTTACAGCAGGTCTGCAGTGCTTATAATTCTGAGGCAGCAAAGAGGGGTAGCATAAGAGGAGGAGGAGGAGATGATCATCCAGACCCTGCGCTGGACCAGTTCATGGAGGCGTATTGCGAGATGCTGACCAAGTACGAGGAAGAGCTCACAAAACCCTTCAAAGAAGCCATGATTTTCCTCTCCAACATTGACGCCCAACTCAAAGCTCTTACTCTTTACTCTAATTCCTCTTCAGATTCTGCTAGTATTAGTAGTGGTGATTTTGTTGGGCAAAGTGGTTCTCCAGAAGAGGCTGATGCCATCAAGGAATGTTCCATGGATCCTCAAGCTGAAGATAGAGAACTCAAAGTTCAACTTTTGGGCAAATACAGTGGATATATGGGCACCCTCAAGCAGGAATTTATGAAGAAGAAAAAGATTGGAAAGTTGCCAAAGGAAGCCCGGCATCAGTTGCTGGATTGGTGGTCCAGACATTATAAGTGGCCCTATCCATCGGAGGCCCAGAAGCTAGCATTGGCAGAATCTACGGGTTTGGATCTTAAACAGATAAATAACTGGTTCATCAATCAAAGGAAACGCCATTGGAAGCCTTCGGAGGACATGCAGTTTGTTTTGATGGATCCAACTCTTCATCACCATCATCATGATCACCACTTCTATATGGACAATGCAATATGCAATCCCTTCTCCATGGATTGTTCATCTACTCGGCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04550 ko05202 map04550 map05202
Pfam Domains
Protein Families
ELK Homeobox_KN KNOX1 KNOX2

Protein Analysis

337

Amino Acids

37.78

Weight (kDa)

6.27

Isoelectric Point (pI)

47.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KNOX1 PF03790 66 - 104 1.5e-19 KNOX1 domain
KNOX2 PF03791 124 - 169 5.7e-21 KNOX2 domain
ELK PF03789 212 - 233 3.9e-07 ELK domain
Homeobox_KN PF05920 252 - 291 1.2e-18 Homeobox KN domain
Homeodomain PF00046 258 - 292 3.8e-06 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 318, 771
AarI CACCTGC 1 cut(s) 283
Acc36I ACCTGC 2 cut(s) 283, 292
AccB1I GGYRCC 2 cut(s) 271, 677
AccB7I CCANNNNNTGG 1 cut(s) 397
AciI CCGC 2 cut(s) 60, 167
AclWI GGATC 5 cut(s) 608, 621, 837, 908, 921
AcsI RAATTY 2 cut(s) 73, 692
AcuI CTGAAG 3 cut(s) 300, 510, 645
AcyI GRCGYC 1 cut(s) 486
AfaI GTAC 1 cut(s) 428
AfiI CCNNNNNNNGG 3 cut(s) 385, 397, 688
AgsI TTSAA 2 cut(s) 454, 647
AhlI ACTAGT 1 cut(s) 92
AjuI GAANNNNNNNTTGG 2 cut(s) 791, 823
AluBI AGCT 5 cut(s) 203, 439, 500, 623, 802
AluI AGCT 5 cut(s) 203, 439, 500, 623, 802
Alw21I GWGCWC 1 cut(s) 441
Alw26I GTCTC 1 cut(s) 167
AlwI GGATC 5 cut(s) 608, 621, 837, 908, 921
AlwNI CAGNNNCTG 3 cut(s) 380, 533, 748
AoxI GGCC 2 cut(s) 776, 792
ApeKI GCWGC 3 cut(s) 62, 99, 329
ApoI RAATTY 2 cut(s) 73, 692
ArsI GACNNNNNNTTYG 2 cut(s) 884, 916
AspLEI GCGC 1 cut(s) 385
AspS9I GGNCC 4 cut(s) 388, 759, 777, 793
AsuC2I CCSGG 1 cut(s) 736
AsuHPI GGTGA 3 cut(s) 563, 920, 935
AsuNHI GCTAGC 1 cut(s) 802
AvaII GGWCC 2 cut(s) 388, 759
BaeGI GKGCMC 2 cut(s) 274, 680
BamHI GGATCC 2 cut(s) 613, 913
BanI GGYRCC 2 cut(s) 271, 677
BanII GRGCYC 1 cut(s) 441
Bbv12I GWGCWC 1 cut(s) 441
BbvI GCAGC 3 cut(s) 49, 111, 341
BccI CCATC 5 cut(s) 171, 602, 793, 904, 939
BclI TGATCA 4 cut(s) 135, 181, 367, 940
BcnI CCSGG 1 cut(s) 736
BcoDI GTCTC 1 cut(s) 167
BcuI ACTAGT 1 cut(s) 92
BfaI CTAG 4 cut(s) 93, 291, 537, 803
BfmI CTRYAG 1 cut(s) 307
BfuAI ACCTGC 2 cut(s) 283, 292
BisI GCNGC 4 cut(s) 60, 63, 100, 330
BlsI GCNGC 4 cut(s) 61, 64, 101, 331
Bme1390I CCNGG 1 cut(s) 736
Bme18I GGWCC 2 cut(s) 388, 759
BmgT120I GGNCC 4 cut(s) 388, 759, 777, 793
BmiI GGNNCC 4 cut(s) 273, 615, 679, 915
BmrFI CCNGG 1 cut(s) 736
BmsI GCATC 3 cut(s) 405, 580, 748
BmtI GCTAGC 1 cut(s) 806
BpmI CTGGAG 1 cut(s) 561
BpuEI CTTGAG 2 cut(s) 603, 668
BpuMI CCSGG 1 cut(s) 736
BsaBI GATNNNNATC 1 cut(s) 369
BsaHI GRCGYC 1 cut(s) 486
BsaJI CCNNGG 2 cut(s) 609, 984
Bsc4I CCNNNNNNNGG 3 cut(s) 385, 397, 688
Bse1I ACTGG 2 cut(s) 391, 854
Bse8I GATNNNNATC 1 cut(s) 369
BseDI CCNNGG 2 cut(s) 609, 984
BseGI GGATG 3 cut(s) 163, 217, 370
BseJI GATNNNNATC 1 cut(s) 369
BseLI CCNNNNNNNGG 3 cut(s) 385, 397, 688
BseMII CTCAG 1 cut(s) 315
BseNI ACTGG 2 cut(s) 391, 854
BseRI GAGGAG 4 cut(s) 366, 369, 372, 375
BseSI GKGCMC 2 cut(s) 274, 680
BseXI GCAGC 3 cut(s) 49, 111, 341
BshFI GGCC 2 cut(s) 778, 794
BshNI GGYRCC 2 cut(s) 271, 677
BsiHKAI GWGCWC 1 cut(s) 441
BsiSI CCGG 1 cut(s) 736
BslI CCNNNNNNNGG 3 cut(s) 385, 397, 688
BsmAI GTCTC 1 cut(s) 167
BsnI GGCC 2 cut(s) 778, 794
Bsp1286I GDGCHC 3 cut(s) 274, 441, 680
Bsp143I GATC 7 cut(s) 135, 181, 367, 613, 829, 913, 940
Bsp19I CCATGG 2 cut(s) 609, 984
BspACI CCGC 2 cut(s) 60, 167
BspANI GGCC 2 cut(s) 778, 794
BspCNI CTCAG 1 cut(s) 316
BspHI TCATGA 1 cut(s) 937
BspLI GGNNCC 4 cut(s) 273, 615, 679, 915
BspMAI CTGCAG 1 cut(s) 311
BspMI ACCTGC 2 cut(s) 283, 292
BspOI GCTAGC 1 cut(s) 806
BspPI GGATC 5 cut(s) 608, 621, 837, 908, 921
BspQI GCTCTTC 1 cut(s) 429
BspT107I GGYRCC 2 cut(s) 271, 677
BsrI ACTGG 2 cut(s) 391, 854
BssECI CCNNGG 2 cut(s) 609, 984
BssMI GATC 7 cut(s) 135, 181, 367, 613, 829, 913, 940
BssNI GRCGYC 1 cut(s) 486
BssT1I CCWWGG 2 cut(s) 609, 984
Bst4CI ACNGT 3 cut(s) 26, 32, 665
Bst6I CTCTTC 5 cut(s) 230, 429, 529, 576, 927
BstACI GRCGYC 1 cut(s) 486
BstAPI GCANNNNNTGC 1 cut(s) 745
BstC8I GCNNGC 1 cut(s) 804
BstDEI CTNAG 2 cut(s) 204, 324
BstDSI CCRYGG 2 cut(s) 609, 984
BstENI CCTNNNNNAGG 1 cut(s) 686
BstF5I GGATG 3 cut(s) 163, 217, 370
BstHHI GCGC 1 cut(s) 385
BstKTI GATC 7 cut(s) 138, 184, 370, 616, 832, 916, 943
BstMAI GTCTC 1 cut(s) 167
BstMBI GATC 7 cut(s) 135, 181, 367, 613, 829, 913, 940
BstMWI GCNNNNNNNGC 1 cut(s) 745
BstNSI RCATGY 1 cut(s) 898
BstSCI CCNGG 1 cut(s) 734
BstSFI CTRYAG 1 cut(s) 307
BstSLI GKGCMC 2 cut(s) 274, 680
BstV1I GCAGC 3 cut(s) 49, 111, 341
BstX2I RGATCY 3 cut(s) 613, 829, 913
BstYI RGATCY 3 cut(s) 613, 829, 913
BsuRI GGCC 2 cut(s) 778, 794
BtgI CCRYGG 2 cut(s) 609, 984
BtsCI GGATG 3 cut(s) 163, 217, 370
BtsI GCAGTG 1 cut(s) 316
BtsIMutI CAGTG 3 cut(s) 31, 316, 670
BveI ACCTGC 2 cut(s) 283, 292
Cac8I GCNNGC 1 cut(s) 804
CaiI CAGNNNCTG 3 cut(s) 380, 533, 748
CciI TCATGA 1 cut(s) 937
CfoI GCGC 1 cut(s) 385
Cfr13I GGNCC 4 cut(s) 388, 759, 777, 793
CseI GACGC 1 cut(s) 494
Csp6I GTAC 1 cut(s) 427
CspCI CAANNNNNGTGG 2 cut(s) 646, 681
CviAII CATG 7 cut(s) 170, 397, 463, 610, 895, 938, 985
CviQI GTAC 1 cut(s) 427
DdeI CTNAG 2 cut(s) 204, 324
DpnI GATC 7 cut(s) 137, 183, 369, 615, 831, 915, 942
DpnII GATC 7 cut(s) 135, 181, 367, 613, 829, 913, 940
Eam1104I CTCTTC 5 cut(s) 230, 429, 529, 576, 927
EarI CTCTTC 5 cut(s) 230, 429, 529, 576, 927
Ecl136II GAGCTC 1 cut(s) 439
Eco130I CCWWGG 2 cut(s) 609, 984
Eco24I GRGCYC 1 cut(s) 441
Eco47I GGWCC 2 cut(s) 388, 759
Eco53kI GAGCTC 1 cut(s) 439
Eco57I CTGAAG 3 cut(s) 300, 510, 645
EcoICRI GAGCTC 1 cut(s) 439
EcoNI CCTNNNNNAGG 1 cut(s) 686
EcoRI GAATTC 1 cut(s) 73
EcoT14I CCWWGG 2 cut(s) 609, 984
EcoT38I GRGCYC 1 cut(s) 441
ErhI CCWWGG 2 cut(s) 609, 984
FaeI CATG 7 cut(s) 173, 400, 466, 613, 898, 941, 988
FalI AAGNNNNNCTT 2 cut(s) 633, 665
FatI CATG 7 cut(s) 169, 396, 462, 609, 894, 937, 984
FbaI TGATCA 4 cut(s) 135, 181, 367, 940
Fnu4HI GCNGC 4 cut(s) 60, 63, 100, 330
FokI GGATG 3 cut(s) 150, 204, 357
FriOI GRGCYC 1 cut(s) 441
Fsp4HI GCNGC 4 cut(s) 60, 63, 100, 330
FspBI CTAG 4 cut(s) 93, 291, 537, 803
GlaI GCGC 1 cut(s) 384
GluI GCNGC 4 cut(s) 60, 63, 100, 330
GsuI CTGGAG 1 cut(s) 561
HaeIII GGCC 2 cut(s) 778, 794
HapII CCGG 1 cut(s) 736
HgaI GACGC 1 cut(s) 494
HhaI GCGC 1 cut(s) 385
Hin1I GRCGYC 1 cut(s) 486
Hin1II CATG 7 cut(s) 173, 400, 466, 613, 898, 941, 988
Hin6I GCGC 1 cut(s) 383
HinP1I GCGC 1 cut(s) 383
HinfI GANTC 4 cut(s) 12, 47, 530, 815
HpaII CCGG 1 cut(s) 736
HphI GGTGA 3 cut(s) 563, 920, 935
Hpy188I TCNGA 5 cut(s) 79, 325, 529, 790, 889
Hpy188III TCNNGA 6 cut(s) 44, 185, 374, 578, 762, 938
HpyAV CCTTC 3 cut(s) 460, 894, 988
HpyCH4III ACNGT 3 cut(s) 26, 32, 665
HpyCH4V TGCA 4 cut(s) 309, 898, 965, 972
HpyF10VI GCNNNNNNNGC 1 cut(s) 745
HpyF3I CTNAG 2 cut(s) 204, 324
Hsp92I GRCGYC 1 cut(s) 486
Hsp92II CATG 7 cut(s) 173, 400, 466, 613, 898, 941, 988
HspAI GCGC 1 cut(s) 383
Ksp22I TGATCA 4 cut(s) 135, 181, 367, 940
Kzo9I GATC 7 cut(s) 135, 181, 367, 613, 829, 913, 940
LguI GCTCTTC 1 cut(s) 429
Lsp1109I GCAGC 3 cut(s) 49, 111, 341
LweI GCATC 3 cut(s) 405, 580, 748
MaeI CTAG 4 cut(s) 93, 291, 537, 803
MaeIII GTNAC 3 cut(s) 20, 26, 294
MalI GATC 7 cut(s) 137, 183, 369, 615, 831, 915, 942
MboI GATC 7 cut(s) 135, 181, 367, 613, 829, 913, 940
MboII GAAGA 9 cut(s) 42, 217, 446, 516, 593, 638, 712, 715, 914
MfeI CAATTG 1 cut(s) 253
MflI RGATCY 3 cut(s) 613, 829, 913
MhlI GDGCHC 3 cut(s) 274, 441, 680
MluCI AATT 5 cut(s) 73, 253, 319, 517, 692
MmeI TCCRAC 2 cut(s) 501, 941
MseI TTAA 2 cut(s) 260, 834
MslI CAYNNNNRTG 2 cut(s) 168, 936
MspA1I CMGCKG 1 cut(s) 62
MspI CCGG 1 cut(s) 736
MspR9I CCNGG 1 cut(s) 736
MunI CAATTG 1 cut(s) 253
MwoI GCNNNNNNNGC 1 cut(s) 745
NciI CCSGG 1 cut(s) 736
NcoI CCATGG 2 cut(s) 609, 984
NdeII GATC 7 cut(s) 135, 181, 367, 613, 829, 913, 940
NheI GCTAGC 1 cut(s) 802
NlaIII CATG 7 cut(s) 173, 400, 466, 613, 898, 941, 988
NlaIV GGNNCC 4 cut(s) 273, 615, 679, 915
NmeAIII GCCGAG 1 cut(s) 982
NmuCI GTSAC 1 cut(s) 26
NspI RCATGY 1 cut(s) 898
PagI TCATGA 1 cut(s) 937
PaqCI CACCTGC 1 cut(s) 283
PciSI GCTCTTC 1 cut(s) 429
PfeI GAWTC 4 cut(s) 12, 47, 530, 815
PflMI CCANNNNNTGG 1 cut(s) 397
PkrI GCNGC 4 cut(s) 61, 64, 101, 331
PsiI TTATAA 2 cut(s) 318, 771
Psp124BI GAGCTC 1 cut(s) 441
PspN4I GGNNCC 4 cut(s) 273, 615, 679, 915
PspPI GGNCC 4 cut(s) 388, 759, 777, 793
PstI CTGCAG 1 cut(s) 311
PstNI CAGNNNCTG 3 cut(s) 380, 533, 748
PsuI RGATCY 3 cut(s) 613, 829, 913
RsaI GTAC 1 cut(s) 428
RsaNI GTAC 1 cut(s) 427
RseI CAYNNNNRTG 2 cut(s) 168, 936
SacI GAGCTC 1 cut(s) 441
SapI GCTCTTC 1 cut(s) 429
SaqAI TTAA 2 cut(s) 260, 834
SatI GCNGC 4 cut(s) 60, 63, 100, 330
Sau3AI GATC 7 cut(s) 135, 181, 367, 613, 829, 913, 940
Sau96I GGNCC 4 cut(s) 388, 759, 777, 793
ScrFI CCNGG 1 cut(s) 736
SduI GDGCHC 3 cut(s) 274, 441, 680
SfaNI GCATC 3 cut(s) 405, 580, 748
SfcI CTRYAG 1 cut(s) 307
SinI GGWCC 2 cut(s) 388, 759
SmiMI CAYNNNNRTG 2 cut(s) 168, 936
SmlI CTYRAG 2 cut(s) 618, 683
SmoI CTYRAG 2 cut(s) 618, 683
SpeI ACTAGT 1 cut(s) 92
Sse9I AATT 5 cut(s) 73, 253, 319, 517, 692
SsiI CCGC 2 cut(s) 60, 167
SspI AATATT 1 cut(s) 145
SspMI CTAG 4 cut(s) 93, 291, 537, 803
SstI GAGCTC 1 cut(s) 441
StyD4I CCNGG 1 cut(s) 734
StyI CCWWGG 2 cut(s) 609, 984
TaaI ACNGT 3 cut(s) 26, 32, 665
TasI AATT 5 cut(s) 73, 253, 319, 517, 692
TauI GCSGC 1 cut(s) 62
TfiI GAWTC 4 cut(s) 12, 47, 530, 815
Tru1I TTAA 2 cut(s) 260, 834
Tru9I TTAA 2 cut(s) 260, 834
TscAI CASTG 3 cut(s) 31, 316, 670
TseFI GTSAC 1 cut(s) 26
TseI GCWGC 3 cut(s) 62, 99, 329
Tsp45I GTSAC 1 cut(s) 26
TspDTI ATGAA 7 cut(s) 17, 86, 385, 713, 844, 914, 984
TspRI CASTG 3 cut(s) 31, 316, 670
Van91I CCANNNNNTGG 1 cut(s) 397
VpaK11BI GGWCC 2 cut(s) 388, 759
XagI CCTNNNNNAGG 1 cut(s) 686
XapI RAATTY 2 cut(s) 73, 692
XceI RCATGY 1 cut(s) 898
XspI CTAG 4 cut(s) 93, 291, 537, 803
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.