pycom17g10380

Heterogeneous nuclear ribonucleoprotein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Reverse (-)
7994470 .. 7996105
1636 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1281 bp
ATGAAAGATCGGACCACAGGCCGTGCTCGTGGTTTCGGTTTTGTTGTTTTTTCTGACCCAGCAGTTGCGGACAGCGTCATAATGGAGAAGCACAACATTGATGGAAGGATGGTTGAGGCCAAAAAGGCTGTTCCAAGGGATGACCAAAACATATTGGGAAGAAGCAGTGGCAGCATCCATGGTTCTCCAGGTCCAGGCCGCACAAGAAAAATTTTCGTTGGAGGTTTAGCATCCACTGTCACAGAGAGTGACTTCAAGAAGTACTTTGAGCAGTTTGGGACAATCACAGATGTTGTGGTGATGTATGATCACCACACCCACAGACCGAGAGGCTTTGGATTCATCACATATGATTCAGAAGAGGCAGTGGACAAGGTTTTACTTAAGACATTTCATGAACTGAACGGGAAGATGGTTGAGGTCAAGCGTGCAGTTCCCAAAGAGTTGTCGCCTGGCCCCAGTCGCAGCCCTATTGGTGGATACAACTACGGTCTGAGTAGGGTCAGTAGCTTCCTTAATGGCTACACTCAGGGGTATACTCCAAATACAGGTGGAGGCTATGGACTTGGTAGATTCAGTCCAGTTGCTGGTGGTCGTAGTGGATTTCCTCCATTTGGTTCTGGTTATGGAATGGGTATGAATTATGAGCCAGGGTTGAGCCTAGGTTTTGGAGGGAATGCAAATTATAATAATAATAATAATAATAATAATAATAGTAATAATTTGAACTATGGACGGGGTGGATTGAGTCCTTATTATATCAATAATTCAAGTAGGTTTAGCAATCCCATTGGGTATGATGGCGGTAATGGAGGAAACACATCTTCATTTTTCAGCTCAGAGACTCGAAACTTATGGGGGGATGGGGGTGGTGGTCTTAACTCCACAAATTCTAATGCTTACATCAGATCAGGAAGTGGGACCATTGGAGGAAGTACATTTGGAAATACTGGAGCTAATTGGGCTTCTTCAGCAATGCCGGCTCAAGGTGGTGGAAATAATGATTCTAACAACAGCAGGAACCTTGGTTATGCAGTTGGGGATAACAGTTACGGTCTGGGGACTGGAGGGTATGGAAGAAACAGTGGTGCAAGTGTGGCCCCTACATCTTCACTTGCTGCATCAAATGGTGGTGGTTTCGATGGGTCCTTGGCTGACTTTTACAGTAGTAATTCAGTTTATGGAGACCCTACTTTGATCGATCATCAAATTCTGAGCGAGATGGGTCTGTTCCTTTTGGTTATGGGCTTGGCGGCGCAGCTTCTGATGTTTCAGCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

427

Amino Acids

44.77

Weight (kDa)

8.51

Isoelectric Point (pI)

37.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_7 PF16367 69 - 139 3e-06 RNA recognition motif
RRM_1 PF00076 71 - 128 9.9e-16 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 687
AccB7I CCANNNNNTGG 1 cut(s) 587
AccI GTMKAC 1 cut(s) 536
AciI CCGC 4 cut(s) 68, 199, 804, 1253
AcsI RAATTY 3 cut(s) 210, 889, 1209
AcuI CTGAAG 1 cut(s) 954
AfaI GTAC 2 cut(s) 263, 937
AfiI CCNNNNNNNGG 6 cut(s) 194, 476, 548, 587, 614, 986
AflII CTTAAG 1 cut(s) 383
AgsI TTSAA 3 cut(s) 256, 727, 771
AjnI CCWGG 4 cut(s) 187, 193, 451, 649
AluBI AGCT 5 cut(s) 510, 837, 956, 1261, 1276
AluI AGCT 5 cut(s) 510, 837, 956, 1261, 1276
Alw21I GWGCWC 1 cut(s) 28
Alw26I GTCTC 2 cut(s) 836, 1179
AlwNI CAGNNNCTG 2 cut(s) 587, 1264
AoxI GGCC 5 cut(s) 19, 117, 196, 454, 1098
ApeKI GCWGC 4 cut(s) 171, 465, 1118, 1258
ApoI RAATTY 3 cut(s) 210, 889, 1209
AspA2I CCTAGG 1 cut(s) 661
AspLEI GCGC 1 cut(s) 1258
AspS9I GGNCC 6 cut(s) 12, 191, 455, 921, 1099, 1146
AsuHPI GGTGA 2 cut(s) 302, 310
AvaII GGWCC 4 cut(s) 12, 191, 921, 1146
AvrII CCTAGG 1 cut(s) 661
BauI CACGAG 1 cut(s) 27
Bbv12I GWGCWC 1 cut(s) 28
BbvI GCAGC 4 cut(s) 183, 477, 1105, 1270
BccI CCATC 7 cut(s) 95, 103, 406, 794, 857, 1136, 1216
BceAI ACGGC 1 cut(s) 6
BciT130I CCWGG 4 cut(s) 189, 195, 453, 651
BciVI GTATCC 1 cut(s) 473
BclI TGATCA 1 cut(s) 307
BcoDI GTCTC 2 cut(s) 836, 1179
BfaI CTAG 1 cut(s) 662
BfrI CTTAAG 1 cut(s) 383
BfuI GTATCC 1 cut(s) 473
BglI GCCNNNNNGGC 1 cut(s) 125
BisI GCNGC 6 cut(s) 172, 199, 466, 1119, 1254, 1259
BlnI CCTAGG 1 cut(s) 661
BlsI GCNGC 6 cut(s) 173, 200, 467, 1120, 1255, 1260
BmcAI AGTACT 1 cut(s) 263
Bme1390I CCNGG 4 cut(s) 189, 195, 453, 651
Bme18I GGWCC 4 cut(s) 12, 191, 921, 1146
BmgT120I GGNCC 6 cut(s) 12, 191, 455, 921, 1099, 1146
BmiI GGNNCC 5 cut(s) 457, 922, 1022, 1101, 1147
BmrFI CCNGG 4 cut(s) 189, 195, 453, 651
BmrI ACTGGG 1 cut(s) 453
BmsI GCATC 3 cut(s) 183, 239, 1130
BmuI ACTGGG 1 cut(s) 453
BpmI CTGGAG 3 cut(s) 171, 972, 1086
BpuEI CTTGAG 1 cut(s) 969
Bsa29I ATCGAT 1 cut(s) 1200
BsaI GGTCTC 1 cut(s) 1179
BsaJI CCNNGG 6 cut(s) 134, 178, 650, 661, 1024, 1149
Bsc4I CCNNNNNNNGG 6 cut(s) 194, 476, 548, 587, 614, 986
Bse118I RCCGGY 1 cut(s) 979
Bse1I ACTGG 4 cut(s) 459, 581, 955, 1069
Bse3DI GCAATG 1 cut(s) 981
BseBI CCWGG 4 cut(s) 189, 195, 453, 651
BseCI ATCGAT 1 cut(s) 1200
BseDI CCNNGG 6 cut(s) 134, 178, 650, 661, 1024, 1149
BseGI GGATG 5 cut(s) 114, 145, 174, 230, 868
BseLI CCNNNNNNNGG 6 cut(s) 194, 476, 548, 587, 614, 986
BseMI GCAATG 1 cut(s) 981
BseMII CTCAG 4 cut(s) 485, 542, 852, 1205
BseNI ACTGG 4 cut(s) 459, 581, 955, 1069
BseXI GCAGC 4 cut(s) 183, 477, 1105, 1270
BseYI CCCAGC 1 cut(s) 58
BsgI GTGCAG 1 cut(s) 450
BshFI GGCC 5 cut(s) 21, 119, 198, 456, 1100
BshVI ATCGAT 1 cut(s) 1200
BsiHKAI GWGCWC 1 cut(s) 28
BsiSI CCGG 1 cut(s) 980
BslFI GGGAC 3 cut(s) 292, 934, 1075
BslI CCNNNNNNNGG 6 cut(s) 194, 476, 548, 587, 614, 986
BsmAI GTCTC 2 cut(s) 836, 1179
BsmFI GGGAC 3 cut(s) 292, 934, 1075
BsmI GAATGC 1 cut(s) 682
BsnI GGCC 5 cut(s) 21, 119, 198, 456, 1100
Bso31I GGTCTC 1 cut(s) 1179
Bsp1286I GDGCHC 1 cut(s) 28
Bsp143I GATC 5 cut(s) 7, 307, 908, 1197, 1201
Bsp19I CCATGG 1 cut(s) 178
BspACI CCGC 4 cut(s) 68, 199, 804, 1253
BspANI GGCC 5 cut(s) 21, 119, 198, 456, 1100
BspCNI CTCAG 4 cut(s) 486, 541, 851, 1206
BspDI ATCGAT 1 cut(s) 1200
BspHI TCATGA 1 cut(s) 394
BspLI GGNNCC 5 cut(s) 457, 922, 1022, 1101, 1147
BspTI CTTAAG 1 cut(s) 383
BspTNI GGTCTC 1 cut(s) 1179
BsrDI GCAATG 1 cut(s) 981
BsrFI RCCGGY 1 cut(s) 979
BsrI ACTGG 4 cut(s) 459, 581, 955, 1069
BssAI RCCGGY 1 cut(s) 979
BssECI CCNNGG 6 cut(s) 134, 178, 650, 661, 1024, 1149
BssMI GATC 5 cut(s) 7, 307, 908, 1197, 1201
BssNAI GTATAC 1 cut(s) 537
BssSI CACGAG 1 cut(s) 27
BssT1I CCWWGG 5 cut(s) 134, 178, 661, 1024, 1149
Bst1107I GTATAC 1 cut(s) 537
Bst2BI CACGAG 1 cut(s) 27
Bst2UI CCWGG 4 cut(s) 189, 195, 453, 651
Bst4CI ACNGT 6 cut(s) 238, 491, 1049, 1055, 1085, 1166
Bst6I CTCTTC 1 cut(s) 354
BstAFI CTTAAG 1 cut(s) 383
BstC8I GCNNGC 2 cut(s) 429, 981
BstDEI CTNAG 4 cut(s) 494, 528, 838, 1214
BstDSI CCRYGG 1 cut(s) 178
BstF5I GGATG 5 cut(s) 114, 145, 174, 230, 868
BstHHI GCGC 1 cut(s) 1258
BstKTI GATC 5 cut(s) 10, 310, 911, 1200, 1204
BstMAI GTCTC 2 cut(s) 836, 1179
BstMBI GATC 5 cut(s) 7, 307, 908, 1197, 1201
BstMWI GCNNNNNNNGC 7 cut(s) 125, 171, 462, 962, 971, 980, 1097
BstNI CCWGG 4 cut(s) 189, 195, 453, 651
BstSCI CCNGG 4 cut(s) 187, 193, 451, 649
BstV1I GCAGC 4 cut(s) 183, 477, 1105, 1270
BstZ17I GTATAC 1 cut(s) 537
Bsu15I ATCGAT 1 cut(s) 1200
BsuI GTATCC 1 cut(s) 473
BsuRI GGCC 5 cut(s) 21, 119, 198, 456, 1100
BsuTUI ATCGAT 1 cut(s) 1200
BtgI CCRYGG 1 cut(s) 178
BtsCI GGATG 5 cut(s) 114, 145, 174, 230, 868
BtsI GCAGTG 2 cut(s) 172, 372
BtsIMutI CAGTG 4 cut(s) 172, 234, 372, 1090
Cac8I GCNNGC 2 cut(s) 429, 981
CaiI CAGNNNCTG 2 cut(s) 587, 1264
CciI TCATGA 1 cut(s) 394
CfoI GCGC 1 cut(s) 1258
Cfr10I RCCGGY 1 cut(s) 979
Cfr13I GGNCC 6 cut(s) 12, 191, 455, 921, 1099, 1146
ClaI ATCGAT 1 cut(s) 1200
CseI GACGC 1 cut(s) 64
Csp6I GTAC 2 cut(s) 262, 936
CviAII CATG 2 cut(s) 179, 395
CviQI GTAC 2 cut(s) 262, 936
DdeI CTNAG 4 cut(s) 494, 528, 838, 1214
DpnI GATC 5 cut(s) 9, 309, 910, 1199, 1203
DpnII GATC 5 cut(s) 7, 307, 908, 1197, 1201
Eam1104I CTCTTC 1 cut(s) 354
EarI CTCTTC 1 cut(s) 354
Eco130I CCWWGG 5 cut(s) 134, 178, 661, 1024, 1149
Eco31I GGTCTC 1 cut(s) 1179
Eco47I GGWCC 4 cut(s) 12, 191, 921, 1146
Eco57I CTGAAG 1 cut(s) 954
EcoO109I RGGNCCY 1 cut(s) 1146
EcoRII CCWGG 4 cut(s) 187, 193, 451, 649
EcoT14I CCWWGG 5 cut(s) 134, 178, 661, 1024, 1149
ErhI CCWWGG 5 cut(s) 134, 178, 661, 1024, 1149
FaeI CATG 2 cut(s) 182, 398
FalI AAGNNNNNCTT 2 cut(s) 248, 280
FaqI GGGAC 3 cut(s) 292, 934, 1075
FatI CATG 2 cut(s) 178, 394
FauNDI CATATG 1 cut(s) 349
FbaI TGATCA 1 cut(s) 307
FblI GTMKAC 1 cut(s) 536
Fnu4HI GCNGC 6 cut(s) 172, 199, 466, 1119, 1254, 1259
FokI GGATG 5 cut(s) 121, 152, 161, 217, 875
Fsp4HI GCNGC 6 cut(s) 172, 199, 466, 1119, 1254, 1259
FspBI CTAG 1 cut(s) 662
GlaI GCGC 1 cut(s) 1257
GluI GCNGC 6 cut(s) 172, 199, 466, 1119, 1254, 1259
GsaI CCCAGC 1 cut(s) 62
GsuI CTGGAG 3 cut(s) 171, 972, 1086
HaeIII GGCC 5 cut(s) 21, 119, 198, 456, 1100
HapII CCGG 1 cut(s) 980
HgaI GACGC 1 cut(s) 64
HhaI GCGC 1 cut(s) 1258
Hin1II CATG 2 cut(s) 182, 398
Hin6I GCGC 1 cut(s) 1256
HinP1I GCGC 1 cut(s) 1256
HinfI GANTC 6 cut(s) 339, 353, 573, 748, 844, 1004
HpaII CCGG 1 cut(s) 980
HphI GGTGA 2 cut(s) 302, 310
Hpy166II GTNNAC 2 cut(s) 370, 537
Hpy188I TCNGA 8 cut(s) 12, 55, 358, 495, 841, 908, 1215, 1266
Hpy188III TCNNGA 3 cut(s) 256, 395, 912
Hpy8I GTNNAC 2 cut(s) 370, 537
HpyAV CCTTC 1 cut(s) 99
HpyCH4III ACNGT 6 cut(s) 238, 491, 1049, 1055, 1085, 1166
HpyCH4V TGCA 5 cut(s) 431, 680, 1034, 1091, 1121
HpyF10VI GCNNNNNNNGC 7 cut(s) 125, 171, 462, 962, 971, 980, 1097
HpyF3I CTNAG 4 cut(s) 494, 528, 838, 1214
Hsp92II CATG 2 cut(s) 182, 398
HspAI GCGC 1 cut(s) 1256
KroI GCCGGC 1 cut(s) 979
KroNI GCCGGC 1 cut(s) 981
Ksp22I TGATCA 1 cut(s) 307
Kzo9I GATC 5 cut(s) 7, 307, 908, 1197, 1201
LmnI GCTCC 1 cut(s) 953
Lsp1109I GCAGC 4 cut(s) 183, 477, 1105, 1270
LweI GCATC 3 cut(s) 183, 239, 1130
MaeI CTAG 1 cut(s) 662
MaeIII GTNAC 3 cut(s) 238, 248, 1049
MalI GATC 5 cut(s) 9, 309, 910, 1199, 1203
MboI GATC 5 cut(s) 7, 307, 908, 1197, 1201
MboII GAAGA 7 cut(s) 171, 371, 421, 816, 960, 1089, 1101
MhlI GDGCHC 1 cut(s) 28
MluCI AATT 9 cut(s) 210, 640, 682, 721, 766, 889, 958, 1171, 1209
MlyI GAGTC 2 cut(s) 757, 838
MmeI TCCRAC 1 cut(s) 199
MroNI GCCGGC 1 cut(s) 979
MseI TTAA 3 cut(s) 384, 516, 879
MspCI CTTAAG 1 cut(s) 383
MspI CCGG 1 cut(s) 980
MspR9I CCNGG 4 cut(s) 189, 195, 453, 651
Mva1269I GAATGC 1 cut(s) 682
MvaI CCWGG 4 cut(s) 189, 195, 453, 651
MwoI GCNNNNNNNGC 7 cut(s) 125, 171, 462, 962, 971, 980, 1097
NaeI GCCGGC 1 cut(s) 981
NcoI CCATGG 1 cut(s) 178
NdeI CATATG 1 cut(s) 349
NdeII GATC 5 cut(s) 7, 307, 908, 1197, 1201
NgoMIV GCCGGC 1 cut(s) 979
NlaIII CATG 2 cut(s) 182, 398
NlaIV GGNNCC 5 cut(s) 457, 922, 1022, 1101, 1147
NmuCI GTSAC 2 cut(s) 238, 248
PagI TCATGA 1 cut(s) 394
PctI GAATGC 1 cut(s) 682
PdiI GCCGGC 1 cut(s) 981
PfeI GAWTC 4 cut(s) 339, 353, 573, 1004
PflFI GACNNNGTC 1 cut(s) 74
PflMI CCANNNNNTGG 1 cut(s) 587
PkrI GCNGC 6 cut(s) 173, 200, 467, 1120, 1255, 1260
PleI GAGTC 2 cut(s) 756, 838
PpsI GAGTC 2 cut(s) 756, 838
PpuMI RGGWCCY 1 cut(s) 1146
PsiI TTATAA 1 cut(s) 687
Psp5II RGGWCCY 1 cut(s) 1146
Psp6I CCWGG 4 cut(s) 187, 193, 451, 649
PspFI CCCAGC 1 cut(s) 58
PspGI CCWGG 4 cut(s) 187, 193, 451, 649
PspN4I GGNNCC 5 cut(s) 457, 922, 1022, 1101, 1147
PspPI GGNCC 6 cut(s) 12, 191, 455, 921, 1099, 1146
PspPPI RGGWCCY 1 cut(s) 1146
PstNI CAGNNNCTG 2 cut(s) 587, 1264
PsyI GACNNNGTC 1 cut(s) 74
RsaI GTAC 2 cut(s) 263, 937
RsaNI GTAC 2 cut(s) 262, 936
SaqAI TTAA 3 cut(s) 384, 516, 879
SatI GCNGC 6 cut(s) 172, 199, 466, 1119, 1254, 1259
Sau3AI GATC 5 cut(s) 7, 307, 908, 1197, 1201
Sau96I GGNCC 6 cut(s) 12, 191, 455, 921, 1099, 1146
ScaI AGTACT 1 cut(s) 263
SchI GAGTC 2 cut(s) 757, 838
ScrFI CCNGG 4 cut(s) 189, 195, 453, 651
SduI GDGCHC 1 cut(s) 28
SfaNI GCATC 3 cut(s) 183, 239, 1130
SinI GGWCC 4 cut(s) 12, 191, 921, 1146
SmlI CTYRAG 2 cut(s) 383, 984
SmoI CTYRAG 2 cut(s) 383, 984
Sse9I AATT 9 cut(s) 210, 640, 682, 721, 766, 889, 958, 1171, 1209
SsiI CCGC 4 cut(s) 68, 199, 804, 1253
SspMI CTAG 1 cut(s) 662
StyD4I CCNGG 4 cut(s) 187, 193, 451, 649
StyI CCWWGG 5 cut(s) 134, 178, 661, 1024, 1149
TaaI ACNGT 6 cut(s) 238, 491, 1049, 1055, 1085, 1166
TaqI TCGA 3 cut(s) 847, 1140, 1200
TaqII GACCGA 1 cut(s) 340
TasI AATT 9 cut(s) 210, 640, 682, 721, 766, 889, 958, 1171, 1209
TatI WGTACW 2 cut(s) 261, 935
TauI GCSGC 2 cut(s) 201, 1256
TfiI GAWTC 4 cut(s) 339, 353, 573, 1004
Tru1I TTAA 3 cut(s) 384, 516, 879
Tru9I TTAA 3 cut(s) 384, 516, 879
TscAI CASTG 4 cut(s) 172, 241, 372, 1090
TseFI GTSAC 2 cut(s) 238, 248
TseI GCWGC 4 cut(s) 171, 465, 1118, 1258
Tsp45I GTSAC 2 cut(s) 238, 248
TspDTI ATGAA 6 cut(s) 17, 331, 383, 411, 653, 816
TspRI CASTG 4 cut(s) 172, 241, 372, 1090
Tth111I GACNNNGTC 1 cut(s) 74
Van91I CCANNNNNTGG 1 cut(s) 587
Vha464I CTTAAG 1 cut(s) 383
VpaK11BI GGWCC 4 cut(s) 12, 191, 921, 1146
XapI RAATTY 3 cut(s) 210, 889, 1209
XmaJI CCTAGG 1 cut(s) 661
XmiI GTMKAC 1 cut(s) 536
XspI CTAG 1 cut(s) 662
ZrmI AGTACT 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.