transposition, RNA-mediated
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G07600 AT3G07600 AT5G48290 AT5G48290 AT5G48290 |
| fragaria_vesca | FvH4_6g40280 FvH4_6g40280 |
| malus_domestica | MD09G1133200.v1.1 |
| prunus_persica | Prupe.3G193500_v2.0.a1 Prupe.3G193600_v2.0.a1 |
| pyrus_communis | pycom09g05430 pycom17g11110 |
| rosa_chinensis | RchiOBHm_Chr2g0155451 RchiOBHm_Chr2g0155471 |
| rosa_laevigata | RLG00000020837 RLG00000020839 |
| rosa_multiflora | Rmu_sc0006608.1_g000003 |
| rosa_roxburghii | Rroxscaffold_2G00093680 Rroxscaffold_2G00093740 Rroxscaffold_5G00333130 |
| rosa_rugosa | Rorug02G0447200 |
| rosa_samantha | Rh2BG524100 Rh2CG498300 Rh2CG498400 |
| rosa_wichuraiana | Rw2G042200 Rw2G042210 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 297 |
| AclWI | GGATC | 1 cut(s) | 205 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 220 |
| AgsI | TTSAA | 1 cut(s) | 187 |
| AluBI | AGCT | 2 cut(s) | 59, 183 |
| AluI | AGCT | 2 cut(s) | 59, 183 |
| Alw21I | GWGCWC | 2 cut(s) | 36, 162 |
| Alw44I | GTGCAC | 1 cut(s) | 32 |
| AlwI | GGATC | 1 cut(s) | 205 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 306 |
| ApaLI | GTGCAC | 1 cut(s) | 32 |
| AspS9I | GGNCC | 1 cut(s) | 45 |
| AvaII | GGWCC | 1 cut(s) | 45 |
| BaeGI | GKGCMC | 1 cut(s) | 36 |
| Bbv12I | GWGCWC | 2 cut(s) | 36, 162 |
| BccI | CCATC | 1 cut(s) | 77 |
| BclI | TGATCA | 1 cut(s) | 18 |
| BfmI | CTRYAG | 1 cut(s) | 69 |
| Bme18I | GGWCC | 1 cut(s) | 45 |
| BmgT120I | GGNCC | 1 cut(s) | 45 |
| BsaAI | YACGTR | 1 cut(s) | 268 |
| BsaJI | CCNNGG | 2 cut(s) | 258, 281 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 220 |
| Bse1I | ACTGG | 1 cut(s) | 300 |
| BseDI | CCNNGG | 2 cut(s) | 258, 281 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 220 |
| BseMII | CTCAG | 2 cut(s) | 108, 194 |
| BseNI | ACTGG | 1 cut(s) | 300 |
| BseRI | GAGGAG | 2 cut(s) | 236, 263 |
| BseSI | GKGCMC | 1 cut(s) | 36 |
| BsgI | GTGCAG | 1 cut(s) | 292 |
| BsiHKAI | GWGCWC | 2 cut(s) | 36, 162 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 220 |
| Bsp1286I | GDGCHC | 2 cut(s) | 36, 162 |
| Bsp143I | GATC | 2 cut(s) | 18, 210 |
| Bsp19I | CCATGG | 1 cut(s) | 258 |
| BspACI | CCGC | 1 cut(s) | 297 |
| BspCNI | CTCAG | 2 cut(s) | 107, 195 |
| BspMAI | CTGCAG | 1 cut(s) | 73 |
| BspPI | GGATC | 1 cut(s) | 205 |
| BsrI | ACTGG | 1 cut(s) | 300 |
| BssECI | CCNNGG | 2 cut(s) | 258, 281 |
| BssMI | GATC | 2 cut(s) | 18, 210 |
| BssT1I | CCWWGG | 2 cut(s) | 258, 281 |
| BstBAI | YACGTR | 1 cut(s) | 268 |
| BstDEI | CTNAG | 3 cut(s) | 94, 173, 203 |
| BstDSI | CCRYGG | 1 cut(s) | 258 |
| BstKTI | GATC | 2 cut(s) | 21, 213 |
| BstMBI | GATC | 2 cut(s) | 18, 210 |
| BstSFI | CTRYAG | 1 cut(s) | 69 |
| BstSLI | GKGCMC | 1 cut(s) | 36 |
| BtgI | CCRYGG | 1 cut(s) | 258 |
| CaiI | CAGNNNCTG | 1 cut(s) | 306 |
| Cfr13I | GGNCC | 1 cut(s) | 45 |
| CviAII | CATG | 2 cut(s) | 110, 259 |
| CviJI | RGCY | 4 cut(s) | 53, 59, 183, 275 |
| CviKI_1 | RGCY | 4 cut(s) | 53, 59, 183, 275 |
| DdeI | CTNAG | 3 cut(s) | 94, 173, 203 |
| DpnI | GATC | 2 cut(s) | 20, 212 |
| DpnII | GATC | 2 cut(s) | 18, 210 |
| Eco130I | CCWWGG | 2 cut(s) | 258, 281 |
| Eco47I | GGWCC | 1 cut(s) | 45 |
| EcoT14I | CCWWGG | 2 cut(s) | 258, 281 |
| ErhI | CCWWGG | 2 cut(s) | 258, 281 |
| FaeI | CATG | 2 cut(s) | 113, 262 |
| FaiI | YATR | 5 cut(s) | 62, 111, 192, 260, 288 |
| FatI | CATG | 2 cut(s) | 109, 258 |
| FauI | CCCGC | 1 cut(s) | 304 |
| FbaI | TGATCA | 1 cut(s) | 18 |
| Hin1II | CATG | 2 cut(s) | 113, 262 |
| HindIII | AAGCTT | 1 cut(s) | 181 |
| Hpy166II | GTNNAC | 2 cut(s) | 34, 91 |
| Hpy188III | TCNNGA | 1 cut(s) | 16 |
| Hpy8I | GTNNAC | 2 cut(s) | 34, 91 |
| HpyAV | CCTTC | 2 cut(s) | 134, 238 |
| HpyCH4IV | ACGT | 1 cut(s) | 267 |
| HpyCH4V | TGCA | 3 cut(s) | 34, 71, 309 |
| HpyF3I | CTNAG | 3 cut(s) | 94, 173, 203 |
| HpySE526I | ACGT | 1 cut(s) | 267 |
| Hsp92II | CATG | 2 cut(s) | 113, 262 |
| Ksp22I | TGATCA | 1 cut(s) | 18 |
| Kzo9I | GATC | 2 cut(s) | 18, 210 |
| LpnPI | CCDG | 2 cut(s) | 228, 313 |
| MaeII | ACGT | 1 cut(s) | 267 |
| MaeIII | GTNAC | 2 cut(s) | 130, 263 |
| MalI | GATC | 2 cut(s) | 20, 212 |
| MboI | GATC | 2 cut(s) | 18, 210 |
| MboII | GAAGA | 1 cut(s) | 302 |
| MhlI | GDGCHC | 2 cut(s) | 36, 162 |
| MnlI | CCTC | 4 cut(s) | 121, 214, 229, 241 |
| NcoI | CCATGG | 1 cut(s) | 258 |
| NdeII | GATC | 2 cut(s) | 18, 210 |
| NlaIII | CATG | 2 cut(s) | 113, 262 |
| Ppu21I | YACGTR | 1 cut(s) | 268 |
| PspPI | GGNCC | 1 cut(s) | 45 |
| PstI | CTGCAG | 1 cut(s) | 73 |
| PstNI | CAGNNNCTG | 1 cut(s) | 306 |
| Sau3AI | GATC | 2 cut(s) | 18, 210 |
| Sau96I | GGNCC | 1 cut(s) | 45 |
| SduI | GDGCHC | 2 cut(s) | 36, 162 |
| SetI | ASST | 5 cut(s) | 15, 61, 132, 185, 270 |
| SfcI | CTRYAG | 1 cut(s) | 69 |
| SinI | GGWCC | 1 cut(s) | 45 |
| SsiI | CCGC | 1 cut(s) | 297 |
| StyI | CCWWGG | 2 cut(s) | 258, 281 |
| TaiI | ACGT | 1 cut(s) | 270 |
| TspDTI | ATGAA | 4 cut(s) | 17, 54, 77, 303 |
| VneI | GTGCAC | 1 cut(s) | 32 |
| VpaK11BI | GGWCC | 1 cut(s) | 45 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 265 |