Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00012527_4311101_to_5153684

Orthogroup ID

OG0005876

Physical Location & Seq

Genomic Coordinates Forward (+)

332620 .. 337713

Gene Structure 5094 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

ATGACCATGGCCATTGCTTCCTCTCGTTTGCTCTGCCAGAACCCTCCTCCTACCTTCCTCCACCATTCCCCCAATTTTGTCGGAAATAGCAGCAGTAGCAGCAGCCTCAGGCTCTCTTGGCTCAGGTCACAGTCGCATAGGTGCTCTTTTTCTCACTCAAAGTCTGGAAATCAAAAGACCCCCAAATTTGCCAGAAAACAAGTAGAGATAGTGTATGATCCTGATGAAAGGATAAACAAGTTGGCAGATGAGGTTGAAGAGAAGGCCGCTCCGGTTTCAAGGCTCACCCTTTTCTCCCCTTGCAAGATAAATGTTTTCTTGAGAATAACTGGCAAGAGGGAAGATGGGTTTCACGATTTGGCATCTCTCTTTCATGTAATAAGTCTTGGAGATGTAATTAAGTTCTCTTTGTCACCCTCAAAAACTAAAGATCGTCTTTCGACCAATGTGTCTGGGGTGCCCCTTGATGATAGAAATTTGATTATTAAGGCCCTTAATCTCTACAGGAAGAAGACGGGTAGCAACAATTTCTTTTGGATTCATCTTGACAAGAAAGTGCCAACAGGAGCAGGGCTTGGTGGTGGAAGCAGCAATGCTGCAACTGCGCTATGGGCAGCAAATCAGTTTAGTGGTCTTCTTGCCACCGAGAAGGAACTCCAAGAATGGTCGAGTGAGATTGGTTCAGATGTTCCCTTCTTTTTCTCTCAAGGAGCAGCCTATTGTACTGGTCGGGGTGAGGTTGTTCAAAATATTAGTCCAGCCTTACCATTGGACATTCCAATGGTTCTTATAAAGCCCCAACAGGCATGTTCGACAGCTGAAGTTTACAAGTGCCTCCAATTGGATAAAACTAATAAGGTTGATCCTTTAACACTGCTGGAGAGAATCTCAAGGCATGGAATATCACAAGATGTTTGCATAAATGATTTAGAACCTCCAGCATTTGATGTTCTTCCATCTCTTAAAAGATTAAAGCAGCGAGTACTTGCCGCTAGCCGTGGACAATATGACGCTGTTTTTATGTCTGGAAGTGGAAGCACTATTGTTGGGATTGGTTCTCCAGACCCTCCCCAATTTGTATATGACGATGATGAATATAAGGATGTATTTTTGTCAGAGGCGAACTTTCTGACTCGTGACGAAAATAACTGGTATAGGGAACCTGCTTCGAGAAGTGCTTCTGGCTCATCCTCCGAATTTTCCGGGTCGATTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009507 GO:0009509 GO:0009536 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0050515

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

GHMP_kinases_C GHMP_kinases_N

Protein Analysis

406

Amino Acids

44.57

Weight (kDa)

7.61

Isoelectric Point (pI)

46.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GHMP_kinases_N	PF00288	159 - 236	1.9e-14	GHMP kinases N terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005876)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26930
fragaria_vesca	FvH4_3g27650 FvH4_3g27650 FvH4_3g27650 FvH4_3g27650 FvH4_3g27650 FvH4_3g27650 FvH4_3g27650
malus_domestica	MD03G1163100.v1.1
prunus_persica	Prupe.4G269400_v2.0.a1 Prupe.4G269400_v2.0.a1 Prupe.4G269400_v2.0.a1 Prupe.4G269400_v2.0.a1
pyrus_communis	pycom5153684g00180
rosa_chinensis	RchiOBHm_Chr5g0050131
rosa_laevigata	RLG00000034688
rosa_multiflora	Rmu_sc0002289.1_g000014 Rmu_sc0002289.1_g000015
rosa_roxburghii	Rroxscaffold_1G00030810 Rroxscaffold_3G00235880 Rroxscaffold_3G00235890 Rroxscaffold_3G00235900
rosa_rugosa	Rorug05G0259000
rosa_samantha	Rh5AG330800 Rh5BG341500 Rh5CG368000 Rh5DG354300
rosa_wichuraiana	Rw5G031260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	791
AasI	GACNNNNNNGTC	1 cut(s)	448
Acc36I	ACCTGC	1 cut(s)	1171
AccB1I	GGYRCC	1 cut(s)	457
AccBSI	CCGCTC	1 cut(s)	269
AciI	CCGC	2 cut(s)	267, 990
AclWI	GGATC	2 cut(s)	212, 857
AcoI	YGGCCR	1 cut(s)	9
AcsI	RAATTY	3 cut(s)	185, 475, 1196
AcuI	CTGAAG	1 cut(s)	840
AfaI	GTAC	2 cut(s)	724, 984
AfiI	CCNNNNNNNGG	1 cut(s)	841
AgsI	TTSAA	3 cut(s)	257, 279, 746
AluBI	AGCT	1 cut(s)	818
AluI	AGCT	1 cut(s)	818
Alw21I	GWGCWC	1 cut(s)	146
AlwI	GGATC	2 cut(s)	212, 857
AoxI	GGCC	3 cut(s)	9, 264, 489
ApeKI	GCWGC	8 cut(s)	90, 99, 102, 588, 596, 614, 713, 976
ApoI	RAATTY	3 cut(s)	185, 475, 1196
ArsI	GACNNNNNNTTYG	2 cut(s)	739, 771
Asp700I	GAANNNNTTC	1 cut(s)	1177
AspLEI	GCGC	1 cut(s)	607
AspS9I	GGNCC	1 cut(s)	490
AsuC2I	CCSGG	1 cut(s)	1204
AsuHPI	GGTGA	3 cut(s)	277, 405, 746
AsuNHI	GCTAGC	1 cut(s)	992
AxyI	CCTNAGG	1 cut(s)	107
BaeGI	GKGCMC	1 cut(s)	462
BalI	TGGCCA	1 cut(s)	11
BanI	GGYRCC	1 cut(s)	457
BauI	CACGAG	1 cut(s)	1134
BbsI	GAAGAC	2 cut(s)	518, 626
Bbv12I	GWGCWC	1 cut(s)	146
BbvI	GCAGC	8 cut(s)	102, 111, 114, 583, 600, 626, 725, 988
BccI	CCATC	2 cut(s)	338, 964
BceAI	ACGGC	1 cut(s)	981
BcnI	CCSGG	1 cut(s)	1204
BfaI	CTAG	1 cut(s)	993
BfmI	CTRYAG	1 cut(s)	502
BfuAI	ACCTGC	1 cut(s)	1171
BmcAI	AGTACT	1 cut(s)	984
Bme1390I	CCNGG	1 cut(s)	1204
BmgT120I	GGNCC	1 cut(s)	490
BmiI	GGNNCC	2 cut(s)	459, 1161
BmrFI	CCNGG	1 cut(s)	1204
BmsI	GCATC	1 cut(s)	371
BmtI	GCTAGC	1 cut(s)	996
BpiI	GAAGAC	2 cut(s)	518, 626
BplI	GAGNNNNNCTC	2 cut(s)	872, 904
BpmI	CTGGAG	3 cut(s)	899, 921, 1044
Bpu10I	CCTNAGC	1 cut(s)	122
BpuEI	CTTGAG	3 cut(s)	340, 690, 874
BpuMI	CCSGG	1 cut(s)	1204
BsaJI	CCNNGG	2 cut(s)	6, 997
BsaWI	WCCGGW	1 cut(s)	271
Bsc4I	CCNNNNNNNGG	1 cut(s)	841
Bse1I	ACTGG	3 cut(s)	334, 730, 1154
Bse21I	CCTNAGG	1 cut(s)	107
Bse3DI	GCAATG	2 cut(s)	12, 598
BseDI	CCNNGG	2 cut(s)	6, 997
BseGI	GGATG	2 cut(s)	1108, 1187
BseLI	CCNNNNNNNGG	1 cut(s)	841
BseMI	GCAATG	2 cut(s)	12, 598
BseMII	CTCAG	2 cut(s)	121, 136
BseNI	ACTGG	3 cut(s)	334, 730, 1154
BseRI	GAGGAG	1 cut(s)	36
BseSI	GKGCMC	1 cut(s)	462
BseXI	GCAGC	8 cut(s)	102, 111, 114, 583, 600, 626, 725, 988
BshFI	GGCC	3 cut(s)	11, 266, 491
BshNI	GGYRCC	1 cut(s)	457
BsiHKAI	GWGCWC	1 cut(s)	146
BsiSI	CCGG	2 cut(s)	272, 1203
BslI	CCNNNNNNNGG	1 cut(s)	841
BsnI	GGCC	3 cut(s)	11, 266, 491
Bsp1286I	GDGCHC	2 cut(s)	146, 462
Bsp143I	GATC	3 cut(s)	217, 430, 862
Bsp19I	CCATGG	1 cut(s)	6
BspACI	CCGC	2 cut(s)	267, 990
BspANI	GGCC	3 cut(s)	11, 266, 491
BspCNI	CTCAG	2 cut(s)	120, 135
BspLI	GGNNCC	2 cut(s)	459, 1161
BspMI	ACCTGC	1 cut(s)	1171
BspOI	GCTAGC	1 cut(s)	996
BspPI	GGATC	2 cut(s)	212, 857
BspT107I	GGYRCC	1 cut(s)	457
BsrBI	CCGCTC	1 cut(s)	269
BsrDI	GCAATG	2 cut(s)	12, 598
BsrI	ACTGG	3 cut(s)	334, 730, 1154
BssECI	CCNNGG	2 cut(s)	6, 997
BssMI	GATC	3 cut(s)	217, 430, 862
BssSI	CACGAG	1 cut(s)	1134
BssT1I	CCWWGG	1 cut(s)	6
Bst2BI	CACGAG	1 cut(s)	1134
Bst4CI	ACNGT	1 cut(s)	132
Bst6I	CTCTTC	1 cut(s)	252
BstC8I	GCNNGC	1 cut(s)	994
BstDEI	CTNAG	2 cut(s)	107, 122
BstDSI	CCRYGG	2 cut(s)	6, 997
BstF5I	GGATG	2 cut(s)	1108, 1187
BstHHI	GCGC	1 cut(s)	607
BstKTI	GATC	3 cut(s)	220, 433, 865
BstMBI	GATC	3 cut(s)	217, 430, 862
BstMWI	GCNNNNNNNGC	5 cut(s)	96, 99, 118, 602, 611
BstNSI	RCATGY	1 cut(s)	810
BstSCI	CCNGG	1 cut(s)	1202
BstSFI	CTRYAG	1 cut(s)	502
BstSLI	GKGCMC	1 cut(s)	462
BstV1I	GCAGC	8 cut(s)	102, 111, 114, 583, 600, 626, 725, 988
BstV2I	GAAGAC	2 cut(s)	518, 626
Bsu36I	CCTNAGG	1 cut(s)	107
BsuRI	GGCC	3 cut(s)	11, 266, 491
BtgI	CCRYGG	2 cut(s)	6, 997
BtsCI	GGATG	2 cut(s)	1108, 1187
BtsI	GCAGTG	1 cut(s)	872
BtsIMutI	CAGTG	1 cut(s)	872
BveI	ACCTGC	1 cut(s)	1171
Cac8I	GCNNGC	1 cut(s)	994
CfoI	GCGC	1 cut(s)	607
Cfr13I	GGNCC	1 cut(s)	490
CseI	GACGC	1 cut(s)	1019
Csp6I	GTAC	2 cut(s)	723, 983
CviAII	CATG	4 cut(s)	7, 374, 807, 896
CviQI	GTAC	2 cut(s)	723, 983
DdeI	CTNAG	2 cut(s)	107, 122
DpnI	GATC	3 cut(s)	219, 432, 864
DpnII	GATC	3 cut(s)	217, 430, 862
DrdI	GACNNNNNNGTC	1 cut(s)	448
DseDI	GACNNNNNNGTC	1 cut(s)	448
EaeI	YGGCCR	1 cut(s)	9
Eam1104I	CTCTTC	1 cut(s)	252
EarI	CTCTTC	1 cut(s)	252
Eco130I	CCWWGG	1 cut(s)	6
Eco57I	CTGAAG	1 cut(s)	840
Eco81I	CCTNAGG	1 cut(s)	107
EcoO109I	RGGNCCY	1 cut(s)	490
EcoT14I	CCWWGG	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	6
FaeI	CATG	4 cut(s)	10, 377, 810, 899
FalI	AAGNNNNNCTT	2 cut(s)	420, 452
FatI	CATG	4 cut(s)	6, 373, 806, 895
FokI	GGATG	2 cut(s)	1115, 1174
FspBI	CTAG	1 cut(s)	993
GlaI	GCGC	1 cut(s)	606
GsuI	CTGGAG	3 cut(s)	899, 921, 1044
HaeIII	GGCC	3 cut(s)	11, 266, 491
HapII	CCGG	2 cut(s)	272, 1203
HgaI	GACGC	1 cut(s)	1019
HhaI	GCGC	1 cut(s)	607
Hin1II	CATG	4 cut(s)	10, 377, 810, 899
Hin6I	GCGC	1 cut(s)	605
HinP1I	GCGC	1 cut(s)	605
HinfI	GANTC	3 cut(s)	538, 885, 1132
HpaII	CCGG	2 cut(s)	272, 1203
HphI	GGTGA	3 cut(s)	277, 405, 746
Hpy166II	GTNNAC	2 cut(s)	826, 1001
Hpy188I	TCNGA	5 cut(s)	83, 685, 1117, 1131, 1195
Hpy188III	TCNNGA	9 cut(s)	165, 221, 319, 353, 545, 1026, 1061, 1136, 1170
Hpy8I	GTNNAC	2 cut(s)	826, 1001
HpyAV	CCTTC	4 cut(s)	64, 256, 643, 703
HpyCH4III	ACNGT	1 cut(s)	132
HpyCH4V	TGCA	3 cut(s)	303, 599, 918
HpyF10VI	GCNNNNNNNGC	5 cut(s)	96, 99, 118, 602, 611
HpyF3I	CTNAG	2 cut(s)	107, 122
Hsp92II	CATG	4 cut(s)	10, 377, 810, 899
HspAI	GCGC	1 cut(s)	605
Kzo9I	GATC	3 cut(s)	217, 430, 862
LmnI	GCTCC	3 cut(s)	274, 566, 710
Lsp1109I	GCAGC	8 cut(s)	102, 111, 114, 583, 600, 626, 725, 988
LweI	GCATC	1 cut(s)	371
MaeI	CTAG	1 cut(s)	993
MaeIII	GTNAC	3 cut(s)	126, 411, 1136
MalI	GATC	3 cut(s)	219, 432, 864
MbiI	CCGCTC	1 cut(s)	269
MboI	GATC	3 cut(s)	217, 430, 862
MboII	GAAGA	6 cut(s)	269, 353, 520, 523, 626, 944
MfeI	CAATTG	1 cut(s)	839
MhlI	GDGCHC	2 cut(s)	146, 462
MlsI	TGGCCA	1 cut(s)	11
MluCI	AATT	8 cut(s)	73, 185, 396, 475, 526, 839, 1073, 1196
MluNI	TGGCCA	1 cut(s)	11
MlyI	GAGTC	1 cut(s)	1126
MmeI	TCCRAC	1 cut(s)	61
Mox20I	TGGCCA	1 cut(s)	11
MroXI	GAANNNNTTC	1 cut(s)	1177
MscI	TGGCCA	1 cut(s)	11
MseI	TTAA	6 cut(s)	399, 486, 495, 869, 963, 971
MslI	CAYNNNNRTG	1 cut(s)	779
Msp20I	TGGCCA	1 cut(s)	11
MspA1I	CMGCKG	1 cut(s)	818
MspI	CCGG	2 cut(s)	272, 1203
MspR9I	CCNGG	1 cut(s)	1204
MunI	CAATTG	1 cut(s)	839
MwoI	GCNNNNNNNGC	5 cut(s)	96, 99, 118, 602, 611
NciI	CCSGG	1 cut(s)	1204
NcoI	CCATGG	1 cut(s)	6
NdeII	GATC	3 cut(s)	217, 430, 862
NheI	GCTAGC	1 cut(s)	992
NlaIII	CATG	4 cut(s)	10, 377, 810, 899
NlaIV	GGNNCC	2 cut(s)	459, 1161
NmuCI	GTSAC	3 cut(s)	126, 411, 1136
NspI	RCATGY	1 cut(s)	810
PdmI	GAANNNNTTC	1 cut(s)	1177
PfeI	GAWTC	2 cut(s)	538, 885
PleI	GAGTC	1 cut(s)	1126
PpsI	GAGTC	1 cut(s)	1126
PsiI	TTATAA	1 cut(s)	791
PspN4I	GGNNCC	2 cut(s)	459, 1161
PspPI	GGNCC	1 cut(s)	490
PvuII	CAGCTG	1 cut(s)	818
RsaI	GTAC	2 cut(s)	724, 984
RsaNI	GTAC	2 cut(s)	723, 983
RseI	CAYNNNNRTG	1 cut(s)	779
SaqAI	TTAA	6 cut(s)	399, 486, 495, 869, 963, 971
Sau3AI	GATC	3 cut(s)	217, 430, 862
Sau96I	GGNCC	1 cut(s)	490
ScaI	AGTACT	1 cut(s)	984
SchI	GAGTC	1 cut(s)	1126
ScrFI	CCNGG	1 cut(s)	1204
SduI	GDGCHC	2 cut(s)	146, 462
SetI	ASST	9 cut(s)	56, 128, 143, 255, 741, 820, 861, 937, 1165
SfaNI	GCATC	1 cut(s)	371
SfcI	CTRYAG	1 cut(s)	502
SmiMI	CAYNNNNRTG	1 cut(s)	779
SmlI	CTYRAG	3 cut(s)	319, 705, 889
SmoI	CTYRAG	3 cut(s)	319, 705, 889
Sse9I	AATT	8 cut(s)	73, 185, 396, 475, 526, 839, 1073, 1196
SsiI	CCGC	2 cut(s)	267, 990
SspI	AATATT	1 cut(s)	751
SspMI	CTAG	1 cut(s)	993
StyD4I	CCNGG	1 cut(s)	1202
StyI	CCWWGG	1 cut(s)	6
TaaI	ACNGT	1 cut(s)	132
TaqI	TCGA	5 cut(s)	440, 668, 812, 1169, 1208
TasI	AATT	8 cut(s)	73, 185, 396, 475, 526, 839, 1073, 1196
TatI	WGTACW	2 cut(s)	722, 982
TauI	GCSGC	2 cut(s)	269, 992
TfiI	GAWTC	2 cut(s)	538, 885
Tru1I	TTAA	6 cut(s)	399, 486, 495, 869, 963, 971
Tru9I	TTAA	6 cut(s)	399, 486, 495, 869, 963, 971
TscAI	CASTG	1 cut(s)	879
TseFI	GTSAC	3 cut(s)	126, 411, 1136
TseI	GCWGC	8 cut(s)	90, 99, 102, 588, 596, 614, 713, 976
Tsp45I	GTSAC	3 cut(s)	126, 411, 1136
TspDTI	ATGAA	4 cut(s)	240, 362, 530, 1107
TspRI	CASTG	1 cut(s)	879
XapI	RAATTY	3 cut(s)	185, 475, 1196
XceI	RCATGY	1 cut(s)	810
XmnI	GAANNNNTTC	1 cut(s)	1177
XspI	CTAG	1 cut(s)	993
ZrmI	AGTACT	1 cut(s)	984

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.