RchiOBHm_Chr6g0248991

Serine carboxypeptidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0002263
Physical Location & Seq
Forward (+)
4842950 .. 4846798
3849 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1419 bp
ATGGCATTTGGTTCTGGCAACAACACCATGAGTTGGGTTTGTTTGCATTTGCTTCTTGTTTTGGTTTTCTCAGCAAAGGTAGTTCTTTGTGGCACACGGGTCAAGTCTATTCCGGGTTTCGCTGGTGATCTTCCTTTTAAGCTCTACACTGGGTATGTCAGTGTGGGTAAAGCAGAGATGTTTTACTACTTCATTGAGTCAGAAGGAAACCCCAAAGAAGATCCTTTGTTGCTGTGGTATAGTGGAGGCCCTGGTTGTTCTGTTTTAAGTGGTATCGTATACGAAAATGGTCCTATAGTTTTCAATTATACAGCTTATGAAGGAGGGTTACCATCTACATATTACTACCCATACTCATGGACAAAAACTGCAAGTGTATTGTTTGTGGATGCACCTGTTGGCACTGGTTTCTCCTATGCAACTAGTGCAGATGAATTCCCTTCTTCAGATTTAAAAACAGCAGCACAGGTTTATGGATTTTTGAGGGAGTGGTTGGAAGAGCACCCACAATTTCTCAAAGTTCAGTTATTTATTGGGGCTGACTCATATTCAGGCCTGACGGGCACCATCGTTGTCAAATACATAATAGATGACAATGATGCTGGAGTACTGCCACGACTCAACCTCAAGGGGTATGTTCTAGGGTGTCCACTTACCGATCAAACTCTCAATGGGAATTCAAAGTATGTTTATTCTCATCGGATGGGGCTTATATCAGATGAACTCTACGAGGCAGCTAAAGAAAGCTGCAATTCAAGTTTCTATGATGCTACCACGTCAGAGCCAGAATGCTATGAGGACGTTCAATTGATGGCAAAGCAAATTAAAGACATAAACAAACTCTGCATTCTAGAGCCAAAGTGCACGTGGGCTTCCCCACACCAAGATGGAGAAACAGCTCGTAGATATTTACATGAAAATCCCGAAGAATTCATCCGGTCACTTCCAGAAGATCCTGACTACTACTGTCGAAACTTCAATTATATGCTGGCTTATGTATGGGCAAACGATGAAGGTGTAAGAAAGGCACTTAATGTCAGAGAGGGAACAGTACTAGATTGGAAGAGATGCAATAAAAGTTTGTTATACACAGAAGATGTGGAAAGTGTCGTTGAGTATCATAAATACCTCAGTACCAAGGGATTACAAGTTCTGATATTCAATGGTGATCATGACCTTACAGTCCCAAACACCGGTACGGAACAGTGGATAAGAAGTTTGGATTTGCCTGTTGTCCAATATTGGAGGCCGTGGCTAGTTGATGGTCAAATTGCTGGATACACTGTCAAGTATTCAAGTAGCGAGGGATACCGTTTGACTTATGCAACTGTAAAGGGTGCTGGGCACTCAGCTCCAGAATACAAGCGTAGGGAATGTTATATGATGTTTGATAGGTTCATCCATTACTATCCTCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S10

Protein Analysis

472

Amino Acids

53.52

Weight (kDa)

5.14

Isoelectric Point (pI)

38.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 38 - 468 1.2e-112 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1181
AccB1I GGYRCC 1 cut(s) 563
AccB7I CCANNNNNTGG 1 cut(s) 33
AccI GTMKAC 1 cut(s) 279
AclWI GGATC 2 cut(s) 215, 947
AcsI RAATTY 3 cut(s) 434, 676, 929
AcuI CTGAAG 1 cut(s) 429
AcvI CACGTG 1 cut(s) 867
AfaI GTAC 4 cut(s) 609, 1053, 1135, 1198
AfiI CCNNNNNNNGG 2 cut(s) 33, 1193
AgeI ACCGGT 1 cut(s) 1193
AgsI TTSAA 7 cut(s) 304, 681, 756, 806, 979, 1162, 1296
AhlI ACTAGT 1 cut(s) 422
AjiI CACGTC 1 cut(s) 777
AjnI CCWGG 1 cut(s) 250
AloI GAACNNNNNNTCC 2 cut(s) 1134, 1166
AluBI AGCT 6 cut(s) 142, 314, 737, 747, 899, 1352
AluI AGCT 6 cut(s) 142, 314, 737, 747, 899, 1352
Alw21I GWGCWC 2 cut(s) 504, 866
Alw44I GTGCAC 1 cut(s) 862
AlwI GGATC 2 cut(s) 215, 947
AoxI GGCC 3 cut(s) 247, 553, 1247
ApaLI GTGCAC 1 cut(s) 862
ApeKI GCWGC 3 cut(s) 461, 734, 747
ApoI RAATTY 3 cut(s) 434, 676, 929
AsiGI ACCGGT 1 cut(s) 1193
AspS9I GGNCC 2 cut(s) 248, 290
AsuC2I CCSGG 1 cut(s) 114
AsuHPI GGTGA 2 cut(s) 137, 1178
AvaII GGWCC 1 cut(s) 290
BaeGI GKGCMC 3 cut(s) 566, 866, 1347
BaeI ACNNNNGTAYC 2 cut(s) 1117, 1150
BanI GGYRCC 1 cut(s) 563
BarI GAAGNNNNNNTAC 2 cut(s) 312, 344
BbrPI CACGTG 1 cut(s) 867
Bbv12I GWGCWC 2 cut(s) 504, 866
BbvI GCAGC 3 cut(s) 473, 734, 746
BccI CCATC 6 cut(s) 340, 575, 697, 805, 881, 1256
BceAI ACGGC 1 cut(s) 1234
BciT130I CCWGG 1 cut(s) 252
BciVI GTATCC 2 cut(s) 1271, 1301
BclI TGATCA 1 cut(s) 1168
BcnI CCSGG 1 cut(s) 114
BcuI ACTAGT 1 cut(s) 422
BfaI CTAG 5 cut(s) 423, 641, 851, 1055, 1256
BfmI CTRYAG 1 cut(s) 294
BfuI GTATCC 2 cut(s) 1271, 1301
BglI GCCNNNNNGGC 1 cut(s) 561
BisI GCNGC 3 cut(s) 462, 735, 748
BlsI GCNGC 3 cut(s) 463, 736, 749
BmcAI AGTACT 2 cut(s) 609, 1053
Bme1390I CCNGG 2 cut(s) 114, 252
Bme18I GGWCC 1 cut(s) 290
BmgBI CACGTC 1 cut(s) 777
BmgT120I GGNCC 2 cut(s) 248, 290
BmiI GGNNCC 1 cut(s) 565
BmrFI CCNGG 2 cut(s) 114, 252
BmrI ACTGGG 1 cut(s) 159
BmsI GCATC 4 cut(s) 379, 589, 757, 1058
BmuI ACTGGG 1 cut(s) 159
BpmI CTGGAG 2 cut(s) 624, 1338
BpuEI CTTGAG 1 cut(s) 611
BpuMI CCSGG 1 cut(s) 114
BsaAI YACGTR 1 cut(s) 867
BsaJI CCNNGG 3 cut(s) 250, 1137, 1250
BsaWI WCCGGW 2 cut(s) 936, 1193
Bsc4I CCNNNNNNNGG 2 cut(s) 33, 1193
Bse118I RCCGGY 1 cut(s) 1193
Bse1I ACTGG 2 cut(s) 154, 409
BseBI CCWGG 1 cut(s) 252
BseDI CCNNGG 3 cut(s) 250, 1137, 1250
BseGI GGATG 4 cut(s) 394, 708, 933, 1398
BseLI CCNNNNNNNGG 2 cut(s) 33, 1193
BseMII CTCAG 3 cut(s) 84, 1144, 1362
BseNI ACTGG 2 cut(s) 154, 409
BseSI GKGCMC 3 cut(s) 566, 866, 1347
BseXI GCAGC 3 cut(s) 473, 734, 746
BseYI CCCAGC 1 cut(s) 1340
BsgI GTGCAG 1 cut(s) 447
BshFI GGCC 3 cut(s) 249, 555, 1249
BshNI GGYRCC 1 cut(s) 563
BshTI ACCGGT 1 cut(s) 1193
BsiHKAI GWGCWC 2 cut(s) 504, 866
BsiSI CCGG 3 cut(s) 113, 937, 1194
BslFI GGGAC 1 cut(s) 1169
BslI CCNNNNNNNGG 2 cut(s) 33, 1193
BsmFI GGGAC 1 cut(s) 1169
BsmI GAATGC 2 cut(s) 794, 846
BsnI GGCC 3 cut(s) 249, 555, 1249
Bsp1286I GDGCHC 4 cut(s) 504, 566, 866, 1347
Bsp143I GATC 5 cut(s) 127, 220, 658, 952, 1168
BspANI GGCC 3 cut(s) 249, 555, 1249
BspCNI CTCAG 3 cut(s) 83, 1143, 1361
BspHI TCATGA 1 cut(s) 1171
BspLI GGNNCC 1 cut(s) 565
BspPI GGATC 2 cut(s) 215, 947
BspQI GCTCTTC 1 cut(s) 492
BspT107I GGYRCC 1 cut(s) 563
BsrFI RCCGGY 1 cut(s) 1193
BsrI ACTGG 2 cut(s) 154, 409
BssAI RCCGGY 1 cut(s) 1193
BssECI CCNNGG 3 cut(s) 250, 1137, 1250
BssMI GATC 5 cut(s) 127, 220, 658, 952, 1168
BssNAI GTATAC 1 cut(s) 280
BssT1I CCWWGG 1 cut(s) 1137
Bst1107I GTATAC 1 cut(s) 280
Bst2UI CCWGG 1 cut(s) 252
Bst4CI ACNGT 7 cut(s) 968, 1051, 1183, 1206, 1285, 1313, 1330
Bst6I CTCTTC 2 cut(s) 492, 1058
BstAPI GCANNNNNTGC 1 cut(s) 425
BstBAI YACGTR 1 cut(s) 867
BstC8I GCNNGC 1 cut(s) 990
BstDEI CTNAG 3 cut(s) 70, 1130, 1348
BstDSI CCRYGG 1 cut(s) 1250
BstEII GGTNACC 1 cut(s) 327
BstF5I GGATG 4 cut(s) 394, 708, 933, 1398
BstKTI GATC 5 cut(s) 130, 223, 661, 955, 1171
BstMBI GATC 5 cut(s) 127, 220, 658, 952, 1168
BstMWI GCNNNNNNNGC 2 cut(s) 425, 561
BstNI CCWGG 1 cut(s) 252
BstPI GGTNACC 1 cut(s) 327
BstSCI CCNGG 2 cut(s) 112, 250
BstSFI CTRYAG 1 cut(s) 294
BstSLI GKGCMC 3 cut(s) 566, 866, 1347
BstV1I GCAGC 3 cut(s) 473, 734, 746
BstX2I RGATCY 2 cut(s) 220, 952
BstXI CCANNNNNNTGG 1 cut(s) 357
BstYI RGATCY 2 cut(s) 220, 952
BstZ17I GTATAC 1 cut(s) 280
BsuI GTATCC 2 cut(s) 1271, 1301
BsuRI GGCC 3 cut(s) 249, 555, 1249
BtgI CCRYGG 1 cut(s) 1250
BtrI CACGTC 1 cut(s) 777
BtsCI GGATG 4 cut(s) 394, 708, 933, 1398
BtsIMutI CAGTG 5 cut(s) 147, 166, 402, 1211, 1281
Cac8I GCNNGC 1 cut(s) 990
CciI TCATGA 1 cut(s) 1171
Cfr10I RCCGGY 1 cut(s) 1193
Cfr13I GGNCC 2 cut(s) 248, 290
Csp6I GTAC 4 cut(s) 608, 1052, 1134, 1197
CspAI ACCGGT 1 cut(s) 1193
CviAII CATG 4 cut(s) 28, 357, 914, 1172
CviQI GTAC 4 cut(s) 608, 1052, 1134, 1197
DdeI CTNAG 3 cut(s) 70, 1130, 1348
DpnI GATC 5 cut(s) 129, 222, 660, 954, 1170
DpnII GATC 5 cut(s) 127, 220, 658, 952, 1168
DraI TTTAAA 1 cut(s) 453
DrdI GACNNNNNNGTC 1 cut(s) 1181
DseDI GACNNNNNNGTC 1 cut(s) 1181
Eam1104I CTCTTC 2 cut(s) 492, 1058
EarI CTCTTC 2 cut(s) 492, 1058
Eco130I CCWWGG 1 cut(s) 1137
Eco147I AGGCCT 1 cut(s) 555
Eco47I GGWCC 1 cut(s) 290
Eco57I CTGAAG 1 cut(s) 429
Eco72I CACGTG 1 cut(s) 867
Eco91I GGTNACC 1 cut(s) 327
EcoO109I RGGNCCY 1 cut(s) 248
EcoO65I GGTNACC 1 cut(s) 327
EcoRI GAATTC 3 cut(s) 434, 676, 929
EcoRII CCWGG 1 cut(s) 250
EcoT14I CCWWGG 1 cut(s) 1137
ErhI CCWWGG 1 cut(s) 1137
FaeI CATG 4 cut(s) 31, 360, 917, 1175
FaqI GGGAC 1 cut(s) 1169
FatI CATG 4 cut(s) 27, 356, 913, 1171
FbaI TGATCA 1 cut(s) 1168
FblI GTMKAC 1 cut(s) 279
Fnu4HI GCNGC 3 cut(s) 462, 735, 748
FokI GGATG 4 cut(s) 401, 715, 920, 1385
Fsp4HI GCNGC 3 cut(s) 462, 735, 748
FspBI CTAG 5 cut(s) 423, 641, 851, 1055, 1256
GluI GCNGC 3 cut(s) 462, 735, 748
GsaI CCCAGC 1 cut(s) 1344
GsuI CTGGAG 2 cut(s) 624, 1338
HaeIII GGCC 3 cut(s) 249, 555, 1249
HapII CCGG 3 cut(s) 113, 937, 1194
Hin1II CATG 4 cut(s) 31, 360, 917, 1175
HinfI GANTC 3 cut(s) 197, 542, 618
HpaII CCGG 3 cut(s) 113, 937, 1194
HphI GGTGA 2 cut(s) 137, 1178
Hpy166II GTNNAC 3 cut(s) 280, 650, 864
Hpy188I TCNGA 8 cut(s) 202, 448, 702, 718, 781, 1040, 1155, 1418
Hpy188III TCNNGA 6 cut(s) 851, 923, 947, 956, 1172, 1355
Hpy8I GTNNAC 3 cut(s) 280, 650, 864
HpyAV CCTTC 4 cut(s) 197, 314, 450, 1007
HpyCH4III ACNGT 7 cut(s) 968, 1051, 1183, 1206, 1285, 1313, 1330
HpyCH4IV ACGT 3 cut(s) 776, 801, 866
HpyF10VI GCNNNNNNNGC 2 cut(s) 425, 561
HpyF3I CTNAG 3 cut(s) 70, 1130, 1348
HpySE526I ACGT 3 cut(s) 776, 801, 866
Hsp92II CATG 4 cut(s) 31, 360, 917, 1175
Ksp22I TGATCA 1 cut(s) 1168
Kzo9I GATC 5 cut(s) 127, 220, 658, 952, 1168
LguI GCTCTTC 1 cut(s) 492
LmnI GCTCC 1 cut(s) 1357
Lsp1109I GCAGC 3 cut(s) 473, 734, 746
LweI GCATC 4 cut(s) 379, 589, 757, 1058
MaeI CTAG 5 cut(s) 423, 641, 851, 1055, 1256
MaeII ACGT 3 cut(s) 776, 801, 866
MaeIII GTNAC 2 cut(s) 327, 939
MalI GATC 5 cut(s) 129, 222, 660, 954, 1170
MboI GATC 5 cut(s) 127, 220, 658, 952, 1168
MboII GAAGA 8 cut(s) 122, 230, 435, 509, 938, 962, 1075, 1106
MfeI CAATTG 1 cut(s) 806
MflI RGATCY 2 cut(s) 220, 952
MhlI GDGCHC 4 cut(s) 504, 566, 866, 1347
MlyI GAGTC 3 cut(s) 206, 536, 612
MmeI TCCRAC 1 cut(s) 474
MseI TTAA 5 cut(s) 138, 266, 452, 825, 1032
MslI CAYNNNNRTG 2 cut(s) 355, 885
MspI CCGG 3 cut(s) 113, 937, 1194
MspR9I CCNGG 2 cut(s) 114, 252
MunI CAATTG 1 cut(s) 806
Mva1269I GAATGC 2 cut(s) 794, 846
MvaI CCWGG 1 cut(s) 252
MwoI GCNNNNNNNGC 2 cut(s) 425, 561
NciI CCSGG 1 cut(s) 114
NdeII GATC 5 cut(s) 127, 220, 658, 952, 1168
NlaIII CATG 4 cut(s) 31, 360, 917, 1175
NlaIV GGNNCC 1 cut(s) 565
NmuCI GTSAC 1 cut(s) 939
PagI TCATGA 1 cut(s) 1171
PceI AGGCCT 1 cut(s) 555
PciSI GCTCTTC 1 cut(s) 492
PctI GAATGC 2 cut(s) 794, 846
PflMI CCANNNNNTGG 1 cut(s) 33
PinAI ACCGGT 1 cut(s) 1193
PkrI GCNGC 3 cut(s) 463, 736, 749
PleI GAGTC 3 cut(s) 205, 536, 612
PmaCI CACGTG 1 cut(s) 867
PmlI CACGTG 1 cut(s) 867
PpsI GAGTC 3 cut(s) 205, 536, 612
Ppu21I YACGTR 1 cut(s) 867
Psp6I CCWGG 1 cut(s) 250
PspCI CACGTG 1 cut(s) 867
PspEI GGTNACC 1 cut(s) 327
PspFI CCCAGC 1 cut(s) 1340
PspGI CCWGG 1 cut(s) 250
PspN4I GGNNCC 1 cut(s) 565
PspPI GGNCC 2 cut(s) 248, 290
PsuI RGATCY 2 cut(s) 220, 952
RsaI GTAC 4 cut(s) 609, 1053, 1135, 1198
RsaNI GTAC 4 cut(s) 608, 1052, 1134, 1197
RseI CAYNNNNRTG 2 cut(s) 355, 885
SapI GCTCTTC 1 cut(s) 492
SaqAI TTAA 5 cut(s) 138, 266, 452, 825, 1032
SatI GCNGC 3 cut(s) 462, 735, 748
Sau3AI GATC 5 cut(s) 127, 220, 658, 952, 1168
Sau96I GGNCC 2 cut(s) 248, 290
ScaI AGTACT 2 cut(s) 609, 1053
SchI GAGTC 3 cut(s) 206, 536, 612
ScrFI CCNGG 2 cut(s) 114, 252
SduI GDGCHC 4 cut(s) 504, 566, 866, 1347
SfaNI GCATC 4 cut(s) 379, 589, 757, 1058
SfcI CTRYAG 1 cut(s) 294
SinI GGWCC 1 cut(s) 290
SmiMI CAYNNNNRTG 2 cut(s) 355, 885
SmlI CTYRAG 1 cut(s) 626
SmoI CTYRAG 1 cut(s) 626
SpeI ACTAGT 1 cut(s) 422
SseBI AGGCCT 1 cut(s) 555
SspI AATATT 1 cut(s) 1241
SspMI CTAG 5 cut(s) 423, 641, 851, 1055, 1256
StuI AGGCCT 1 cut(s) 555
StyD4I CCNGG 2 cut(s) 112, 250
StyI CCWWGG 1 cut(s) 1137
TaaI ACNGT 7 cut(s) 968, 1051, 1183, 1206, 1285, 1313, 1330
TaiI ACGT 3 cut(s) 779, 804, 869
TaqI TCGA 1 cut(s) 970
TatI WGTACW 2 cut(s) 607, 1051
Tru1I TTAA 5 cut(s) 138, 266, 452, 825, 1032
Tru9I TTAA 5 cut(s) 138, 266, 452, 825, 1032
TscAI CASTG 5 cut(s) 154, 166, 409, 1211, 1288
TseFI GTSAC 1 cut(s) 939
TseI GCWGC 3 cut(s) 461, 734, 747
Tsp45I GTSAC 1 cut(s) 939
TspDTI ATGAA 8 cut(s) 181, 333, 447, 735, 922, 930, 1026, 1387
TspGWI ACGGA 1 cut(s) 1214
TspRI CASTG 5 cut(s) 154, 166, 409, 1211, 1288
Van91I CCANNNNNTGG 1 cut(s) 33
VneI GTGCAC 1 cut(s) 862
VpaK11BI GGWCC 1 cut(s) 290
XapI RAATTY 3 cut(s) 434, 676, 929
XbaI TCTAGA 1 cut(s) 850
XcmI CCANNNNNNNNNTGG 1 cut(s) 864
XmiI GTMKAC 1 cut(s) 279
XspI CTAG 5 cut(s) 423, 641, 851, 1055, 1256
ZrmI AGTACT 2 cut(s) 609, 1053
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.