RLG00000015105

Serine carboxypeptidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0002263
Physical Location & Seq
Reverse (-)
61821849 .. 61824905
3057 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015105

Sequence Viewer

Length: 1296 bp
ATGAACTGGGTTTGTCTGCATTTGCTTCTTCTACTGATATTCTCAGCAAATGCAGTTCACTGTGGCGCATTGGTCAAGTCTCTTCCGGGATTCGATGGTGAACTTCCTTTCAACCTCTACACTGGAAAAAAGAAAACAAAAAAATATGACTCCTGGTTTATATTTTGTACAGGTCCTTTGGATTTCAACCTTACAGATTATGAAGGAGGTATACCGAAAACTTATCACTACCCATATTCATGGACAAAGACTGCAAGCATATTGTTTGTGGATGCACCTGTTGGCACTGGTTTCTCCTATGCCACTGATGCATCAGAATATGCTACCTCCGATACAAAAACAGCAGAGCAGGTTTACGGCTTTTTGACAGCGTGGTTGAATGAGCACCCGCAGTATTCCAAGCTTCAATTATTTGTTGGAGCTGATTCATATGCAGGAGTATCGGGAACCATTGTTGTTAAACATATAATAGATGCTAATGATGCTGGAGCATCACCACGCCTCAATCTCAAGATCTCATTCCATTTTCTACTATGTTCTATCATCTTAGGAAAGTGTTTGGCTTTTGTCAATGTGAAACAGGGCACTCTGTTTCTCCATGTGATTCTTTCTGCTTTAGAAAGCTGTAATGCAAGTTTCTATGGAGTAACCACAGATCAACCAGAATGTTATGAGGACCTTCAATTGATTGCAAGGCAAATTAAAGACATAAACAAAAACAATATTCTGGAGCCAAAGTGCACATGGGCTTCACCAATAAACGATGAAGAACCAGCTCGTAGATCTATGCAGGAAAATGAATACCCTGAAGACTACCTCCGGTCACCTCTACAAAATCCTGAGTTCTGTCATACCTTCAGCTACTCTCTATCTTATGTTTGGGCAAACAGTGATGAAGTTCGAGCGGCACTTAATATCAGAAATGGAACAGTATTTGATTGGAAGAGATGCAATAAGAGCTTGGATTACACATATGATGTGGCAAGTGTCCTCGAATATCATCAAAATCTCAGTACCAAGGGATTACAAGTTCTGATATTCAATGGTGATCATGACCTTGTAATTCCGAACACCGGCACAGAAGCATGGATAAAAAAGTTGGGTTTGACTGTTGTTAATGATTGGAGACCATGGTTAGTTGATGGTCAAATTGCTGGGTACACCATCAAGTACTCAGAAAATGGATACCGCTTGACATATGCAACCCTAAAGGGAGCAGGTCACTCACCTCAAGAATACAAGCGTAGGGAAGGGTATAAAATGTTCGATAGATTCATCCATTACTATCCTATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S10

Protein Analysis

432

Amino Acids

48.9

Weight (kDa)

6.07

Isoelectric Point (pI)

43.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 57 - 427 3.8e-70 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 340, 1208
AccBSI CCGCTC 1 cut(s) 905
AccI GTMKAC 1 cut(s) 211
AciI CCGC 3 cut(s) 389, 905, 1189
AcuI CTGAAG 2 cut(s) 828, 841
AfaI GTAC 4 cut(s) 169, 1015, 1160, 1172
AfiI CCNNNNNNNGG 1 cut(s) 1073
AgsI TTSAA 6 cut(s) 112, 187, 379, 407, 683, 1042
AjnI CCWGG 1 cut(s) 152
AloI GAACNNNNNNTCC 2 cut(s) 1014, 1046
AluBI AGCT 6 cut(s) 403, 422, 624, 776, 861, 960
AluI AGCT 6 cut(s) 403, 422, 624, 776, 861, 960
Alw21I GWGCWC 2 cut(s) 387, 743
Alw26I GTCTC 2 cut(s) 84, 1120
Alw44I GTGCAC 1 cut(s) 739
ApaLI GTGCAC 1 cut(s) 739
AspLEI GCGC 1 cut(s) 68
AspS9I GGNCC 2 cut(s) 173, 676
AsuC2I CCSGG 1 cut(s) 87
AsuHPI GGTGA 6 cut(s) 110, 486, 744, 816, 1058, 1218
AvaII GGWCC 2 cut(s) 173, 676
BaeGI GKGCMC 2 cut(s) 587, 743
BarI GAAGNNNNNNTAC 2 cut(s) 195, 227
BbsI GAAGAC 1 cut(s) 816
Bbv12I GWGCWC 2 cut(s) 387, 743
BccI CCATC 3 cut(s) 89, 1136, 1172
BceAI ACGGC 1 cut(s) 373
BcgI CGANNNNNNTGC 2 cut(s) 423, 457
BciT130I CCWGG 1 cut(s) 154
BciVI GTATCC 1 cut(s) 1178
BclI TGATCA 1 cut(s) 1048
BcnI CCSGG 1 cut(s) 87
BcoDI GTCTC 2 cut(s) 84, 1120
BfuAI ACCTGC 2 cut(s) 340, 1208
BfuI GTATCC 1 cut(s) 1178
BglII AGATCT 2 cut(s) 513, 782
BisI GCNGC 1 cut(s) 906
BlsI GCNGC 1 cut(s) 907
BmcAI AGTACT 1 cut(s) 1172
Bme1390I CCNGG 2 cut(s) 87, 154
Bme18I GGWCC 2 cut(s) 173, 676
BmgT120I GGNCC 2 cut(s) 173, 676
BmiI GGNNCC 2 cut(s) 448, 732
BmrFI CCNGG 2 cut(s) 87, 154
BmrI ACTGGG 1 cut(s) 16
BmsI GCATC 7 cut(s) 262, 298, 320, 463, 472, 500, 938
BmuI ACTGGG 1 cut(s) 16
BpiI GAAGAC 1 cut(s) 816
BpmI CTGGAG 2 cut(s) 507, 749
BpuEI CTTGAG 2 cut(s) 494, 1215
BpuMI CCSGG 1 cut(s) 87
BsaI GGTCTC 1 cut(s) 1120
BsaJI CCNNGG 2 cut(s) 1017, 1130
BsaWI WCCGGW 1 cut(s) 819
BsaXI ACNNNNNCTCC 2 cut(s) 722, 752
Bsc4I CCNNNNNNNGG 1 cut(s) 1073
Bse118I RCCGGY 1 cut(s) 1073
Bse1I ACTGG 3 cut(s) 11, 127, 292
BseBI CCWGG 1 cut(s) 154
BseDI CCNNGG 2 cut(s) 1017, 1130
BseGI GGATG 2 cut(s) 277, 1275
BseLI CCNNNNNNNGG 1 cut(s) 1073
BseMII CTCAG 4 cut(s) 57, 831, 1024, 1188
BseNI ACTGG 3 cut(s) 11, 127, 292
BseSI GKGCMC 2 cut(s) 587, 743
BseYI CCCAGC 1 cut(s) 1154
BsiHKAI GWGCWC 2 cut(s) 387, 743
BsiSI CCGG 3 cut(s) 86, 820, 1074
BslI CCNNNNNNNGG 1 cut(s) 1073
BsmAI GTCTC 2 cut(s) 84, 1120
Bso31I GGTCTC 1 cut(s) 1120
Bsp1286I GDGCHC 3 cut(s) 387, 587, 743
Bsp1407I TGTACA 1 cut(s) 167
Bsp143I GATC 4 cut(s) 513, 655, 782, 1048
Bsp19I CCATGG 1 cut(s) 1130
BspACI CCGC 3 cut(s) 389, 905, 1189
BspCNI CTCAG 4 cut(s) 56, 832, 1023, 1187
BspHI TCATGA 1 cut(s) 1051
BspLI GGNNCC 2 cut(s) 448, 732
BspMI ACCTGC 2 cut(s) 340, 1208
BspTNI GGTCTC 1 cut(s) 1120
BsrBI CCGCTC 1 cut(s) 905
BsrFI RCCGGY 1 cut(s) 1073
BsrGI TGTACA 1 cut(s) 167
BsrI ACTGG 3 cut(s) 11, 127, 292
BssAI RCCGGY 1 cut(s) 1073
BssECI CCNNGG 2 cut(s) 1017, 1130
BssMI GATC 4 cut(s) 513, 655, 782, 1048
BssNAI GTATAC 1 cut(s) 212
BssT1I CCWWGG 2 cut(s) 1017, 1130
Bst1107I GTATAC 1 cut(s) 212
Bst2UI CCWGG 1 cut(s) 154
Bst4CI ACNGT 4 cut(s) 62, 890, 931, 1111
Bst6I CTCTTC 2 cut(s) 87, 938
BstAUI TGTACA 1 cut(s) 167
BstC8I GCNNGC 1 cut(s) 256
BstDEI CTNAG 5 cut(s) 43, 547, 840, 1010, 1174
BstDSI CCRYGG 1 cut(s) 1130
BstEII GGTNACC 1 cut(s) 822
BstF5I GGATG 2 cut(s) 277, 1275
BstHHI GCGC 1 cut(s) 68
BstKTI GATC 4 cut(s) 516, 658, 785, 1051
BstMAI GTCTC 2 cut(s) 84, 1120
BstMBI GATC 4 cut(s) 513, 655, 782, 1048
BstMWI GCNNNNNNNGC 3 cut(s) 308, 482, 957
BstNI CCWGG 1 cut(s) 154
BstPI GGTNACC 1 cut(s) 822
BstSCI CCNGG 2 cut(s) 85, 152
BstSLI GKGCMC 2 cut(s) 587, 743
BstV2I GAAGAC 1 cut(s) 816
BstX2I RGATCY 2 cut(s) 513, 782
BstXI CCANNNNNNTGG 1 cut(s) 240
BstYI RGATCY 2 cut(s) 513, 782
BstZ17I GTATAC 1 cut(s) 212
BsuI GTATCC 1 cut(s) 1178
BtgI CCRYGG 1 cut(s) 1130
BtsCI GGATG 2 cut(s) 277, 1275
BtsIMutI CAGTG 5 cut(s) 58, 120, 285, 303, 895
BveI ACCTGC 2 cut(s) 340, 1208
Cac8I GCNNGC 1 cut(s) 256
CciI TCATGA 1 cut(s) 1051
CfoI GCGC 1 cut(s) 68
Cfr10I RCCGGY 1 cut(s) 1073
Cfr13I GGNCC 2 cut(s) 173, 676
Csp6I GTAC 4 cut(s) 168, 1014, 1159, 1171
CviAII CATG 6 cut(s) 240, 599, 744, 1052, 1086, 1131
CviQI GTAC 4 cut(s) 168, 1014, 1159, 1171
DdeI CTNAG 5 cut(s) 43, 547, 840, 1010, 1174
DpnI GATC 4 cut(s) 515, 657, 784, 1050
DpnII GATC 4 cut(s) 513, 655, 782, 1048
Eam1104I CTCTTC 2 cut(s) 87, 938
EarI CTCTTC 2 cut(s) 87, 938
Eco130I CCWWGG 2 cut(s) 1017, 1130
Eco31I GGTCTC 1 cut(s) 1120
Eco47I GGWCC 2 cut(s) 173, 676
Eco57I CTGAAG 2 cut(s) 828, 841
Eco91I GGTNACC 1 cut(s) 822
EcoO109I RGGNCCY 2 cut(s) 173, 676
EcoO65I GGTNACC 1 cut(s) 822
EcoRII CCWGG 1 cut(s) 152
EcoT14I CCWWGG 2 cut(s) 1017, 1130
EcoT22I ATGCAT 1 cut(s) 313
ErhI CCWWGG 2 cut(s) 1017, 1130
FaeI CATG 6 cut(s) 243, 602, 747, 1055, 1089, 1134
FatI CATG 6 cut(s) 239, 598, 743, 1051, 1085, 1130
FauI CCCGC 1 cut(s) 396
FauNDI CATATG 3 cut(s) 430, 973, 1198
FbaI TGATCA 1 cut(s) 1048
FblI GTMKAC 1 cut(s) 211
Fnu4HI GCNGC 1 cut(s) 906
FokI GGATG 2 cut(s) 284, 1262
Fsp4HI GCNGC 1 cut(s) 906
GlaI GCGC 1 cut(s) 67
GluI GCNGC 1 cut(s) 906
GsaI CCCAGC 1 cut(s) 1158
GsuI CTGGAG 2 cut(s) 507, 749
HapII CCGG 3 cut(s) 86, 820, 1074
HhaI GCGC 1 cut(s) 68
Hin1II CATG 6 cut(s) 243, 602, 747, 1055, 1089, 1134
Hin6I GCGC 1 cut(s) 66
HinP1I GCGC 1 cut(s) 66
HindIII AAGCTT 1 cut(s) 401
HinfI GANTC 5 cut(s) 90, 149, 425, 604, 1272
HpaII CCGG 3 cut(s) 86, 820, 1074
HphI GGTGA 6 cut(s) 110, 486, 744, 816, 1058, 1218
Hpy166II GTNNAC 6 cut(s) 58, 101, 212, 355, 741, 1161
Hpy188I TCNGA 6 cut(s) 316, 331, 920, 1035, 1068, 1177
Hpy188III TCNNGA 6 cut(s) 444, 511, 728, 839, 1052, 1232
Hpy8I GTNNAC 6 cut(s) 58, 101, 212, 355, 741, 1161
HpyAV CCTTC 4 cut(s) 197, 689, 865, 1244
HpyCH4III ACNGT 4 cut(s) 62, 890, 931, 1111
HpyF10VI GCNNNNNNNGC 3 cut(s) 308, 482, 957
HpyF3I CTNAG 5 cut(s) 43, 547, 840, 1010, 1174
Hsp92II CATG 6 cut(s) 243, 602, 747, 1055, 1089, 1134
HspAI GCGC 1 cut(s) 66
Ksp22I TGATCA 1 cut(s) 1048
Kzo9I GATC 4 cut(s) 513, 655, 782, 1048
LmnI GCTCC 4 cut(s) 419, 488, 730, 1214
LweI GCATC 7 cut(s) 262, 298, 320, 463, 472, 500, 938
MaeIII GTNAC 3 cut(s) 646, 822, 1220
MalI GATC 4 cut(s) 515, 657, 784, 1050
MbiI CCGCTC 1 cut(s) 905
MboI GATC 4 cut(s) 513, 655, 782, 1048
MboII GAAGA 5 cut(s) 20, 74, 779, 821, 955
MfeI CAATTG 1 cut(s) 683
MflI RGATCY 2 cut(s) 513, 782
MhlI GDGCHC 3 cut(s) 387, 587, 743
MluCI AATT 5 cut(s) 407, 683, 699, 1062, 1149
MlyI GAGTC 1 cut(s) 143
MmeI TCCRAC 1 cut(s) 397
MnlI CCTC 9 cut(s) 125, 200, 337, 512, 667, 827, 837, 1001, 1239
Mph1103I ATGCAT 1 cut(s) 313
MseI TTAA 4 cut(s) 459, 702, 912, 1116
MslI CAYNNNNRTG 1 cut(s) 238
MspI CCGG 3 cut(s) 86, 820, 1074
MspR9I CCNGG 2 cut(s) 87, 154
MunI CAATTG 1 cut(s) 683
MvaI CCWGG 1 cut(s) 154
MwoI GCNNNNNNNGC 3 cut(s) 308, 482, 957
NciI CCSGG 1 cut(s) 87
NcoI CCATGG 1 cut(s) 1130
NdeI CATATG 3 cut(s) 430, 973, 1198
NdeII GATC 4 cut(s) 513, 655, 782, 1048
NlaIII CATG 6 cut(s) 243, 602, 747, 1055, 1089, 1134
NlaIV GGNNCC 2 cut(s) 448, 732
NmuCI GTSAC 2 cut(s) 822, 1220
NsiI ATGCAT 1 cut(s) 313
PagI TCATGA 1 cut(s) 1051
PfeI GAWTC 4 cut(s) 90, 425, 604, 1272
PfoI TCCNGGA 1 cut(s) 85
PkrI GCNGC 1 cut(s) 907
PleI GAGTC 1 cut(s) 143
PpsI GAGTC 1 cut(s) 143
PpuMI RGGWCCY 2 cut(s) 173, 676
Psp5II RGGWCCY 2 cut(s) 173, 676
Psp6I CCWGG 1 cut(s) 152
PspEI GGTNACC 1 cut(s) 822
PspFI CCCAGC 1 cut(s) 1154
PspGI CCWGG 1 cut(s) 152
PspN4I GGNNCC 2 cut(s) 448, 732
PspPI GGNCC 2 cut(s) 173, 676
PspPPI RGGWCCY 2 cut(s) 173, 676
PsrI GAACNNNNNNTAC 2 cut(s) 1247, 1279
PsuI RGATCY 2 cut(s) 513, 782
RsaI GTAC 4 cut(s) 169, 1015, 1160, 1172
RsaNI GTAC 4 cut(s) 168, 1014, 1159, 1171
RseI CAYNNNNRTG 1 cut(s) 238
SaqAI TTAA 4 cut(s) 459, 702, 912, 1116
SatI GCNGC 1 cut(s) 906
Sau3AI GATC 4 cut(s) 513, 655, 782, 1048
Sau96I GGNCC 2 cut(s) 173, 676
ScaI AGTACT 1 cut(s) 1172
SchI GAGTC 1 cut(s) 143
ScrFI CCNGG 2 cut(s) 87, 154
SduI GDGCHC 3 cut(s) 387, 587, 743
SfaNI GCATC 7 cut(s) 262, 298, 320, 463, 472, 500, 938
SinI GGWCC 2 cut(s) 173, 676
SmiMI CAYNNNNRTG 1 cut(s) 238
SmlI CTYRAG 2 cut(s) 509, 1230
SmoI CTYRAG 2 cut(s) 509, 1230
Sse9I AATT 5 cut(s) 407, 683, 699, 1062, 1149
SsiI CCGC 3 cut(s) 389, 905, 1189
SspI AATATT 1 cut(s) 724
StyD4I CCNGG 2 cut(s) 85, 152
StyI CCWWGG 2 cut(s) 1017, 1130
TaaI ACNGT 4 cut(s) 62, 890, 931, 1111
TaqI TCGA 4 cut(s) 93, 901, 993, 1266
TasI AATT 5 cut(s) 407, 683, 699, 1062, 1149
TatI WGTACW 2 cut(s) 167, 1170
TauI GCSGC 1 cut(s) 908
TfiI GAWTC 4 cut(s) 90, 425, 604, 1272
Tru1I TTAA 4 cut(s) 459, 702, 912, 1116
Tru9I TTAA 4 cut(s) 459, 702, 912, 1116
TscAI CASTG 5 cut(s) 65, 127, 292, 310, 895
TseFI GTSAC 2 cut(s) 822, 1220
Tsp45I GTSAC 2 cut(s) 822, 1220
TspDTI ATGAA 8 cut(s) 17, 216, 228, 417, 780, 813, 909, 1264
TspRI CASTG 5 cut(s) 65, 127, 292, 310, 895
VneI GTGCAC 1 cut(s) 739
VpaK11BI GGWCC 2 cut(s) 173, 676
XcmI CCANNNNNNNNNTGG 1 cut(s) 741
XmiI GTMKAC 1 cut(s) 211
ZrmI AGTACT 1 cut(s) 1172
Zsp2I ATGCAT 1 cut(s) 313
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.