Rmu_co8479945.1_g000001

Serine carboxypeptidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8479945.1
OG0002263
Physical Location & Seq
Forward (+)
1 .. 1322
1322 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8479945.1_g000001.1.cds

Sequence Viewer

Length: 687 bp
tctgctttagaaagctgtaatgcaagtttctatggagtaaccacagatcaaccagaatgttatgaggaccttcaattgattgcaaggcaaattaaagacataaacaaaaacaatattctggagccaaagtgcacatgggcttcgccaataaacgatgaagaaccagctcgtagatctatgcaggaaaatgaataccctgaagactacctccggtcacctctacagaatcctgagttctgtcataccttcagctattctttatcttatgtttgggcgaacagtgatgaagttcgagcagcacttaatatcagaaatggaacagtatttgattggaagcgatgcaataagagcttagattacacatatgatgtggcaagtgtcctcgaatatcatcaaaatctcagtaccaagggattacaagtgctgatattcaatggtgatcatgaccttataattccgaacaccggcacagaagcatggataaaaaagttgggtttgactattgttaatgattggagaccatggctagttgatggtcaaattgctgggtacaccatcaagtattcagaaaatggataccgcttgacatatgcaaccctaaagggagcaggtcactcacctcaagaatacaaacgtagggaagggtataaaatgtttgatagattcatccattactatcctatctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S10

Protein Analysis

228

Amino Acids

26.51

Weight (kDa)

5.42

Isoelectric Point (pI)

58.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 452
Acc36I ACCTGC 1 cut(s) 599
AciI CCGC 1 cut(s) 580
AcuI CTGAAG 2 cut(s) 219, 232
AfaI GTAC 2 cut(s) 406, 551
AfiI CCNNNNNNNGG 1 cut(s) 464
AgsI TTSAA 2 cut(s) 74, 433
AluBI AGCT 4 cut(s) 15, 167, 252, 351
AluI AGCT 4 cut(s) 15, 167, 252, 351
Alw21I GWGCWC 1 cut(s) 134
Alw26I GTCTC 1 cut(s) 511
Alw44I GTGCAC 1 cut(s) 130
ApaLI GTGCAC 1 cut(s) 130
ApeKI GCWGC 1 cut(s) 296
AspS9I GGNCC 1 cut(s) 67
AsuHPI GGTGA 3 cut(s) 207, 449, 609
AvaII GGWCC 1 cut(s) 67
BaeGI GKGCMC 1 cut(s) 134
BbsI GAAGAC 1 cut(s) 207
Bbv12I GWGCWC 1 cut(s) 134
BbvI GCAGC 1 cut(s) 308
BccI CCATC 2 cut(s) 527, 563
BciVI GTATCC 1 cut(s) 569
BclI TGATCA 1 cut(s) 439
BcoDI GTCTC 1 cut(s) 511
BfaI CTAG 1 cut(s) 527
BfmI CTRYAG 1 cut(s) 221
BfuAI ACCTGC 1 cut(s) 599
BfuI GTATCC 1 cut(s) 569
BglII AGATCT 1 cut(s) 173
BisI GCNGC 1 cut(s) 297
BlsI GCNGC 1 cut(s) 298
Bme18I GGWCC 1 cut(s) 67
BmgT120I GGNCC 1 cut(s) 67
BmiI GGNNCC 1 cut(s) 123
BmsI GCATC 1 cut(s) 329
BpiI GAAGAC 1 cut(s) 207
BpmI CTGGAG 1 cut(s) 140
BpuEI CTTGAG 1 cut(s) 606
BsaI GGTCTC 1 cut(s) 511
BsaJI CCNNGG 2 cut(s) 408, 521
BsaWI WCCGGW 1 cut(s) 210
BsaXI ACNNNNNCTCC 2 cut(s) 113, 143
Bsc4I CCNNNNNNNGG 1 cut(s) 464
Bse118I RCCGGY 1 cut(s) 464
BseDI CCNNGG 2 cut(s) 408, 521
BseGI GGATG 1 cut(s) 666
BseLI CCNNNNNNNGG 1 cut(s) 464
BseMII CTCAG 2 cut(s) 222, 415
BseSI GKGCMC 1 cut(s) 134
BseXI GCAGC 1 cut(s) 308
BseYI CCCAGC 1 cut(s) 545
BsiHKAI GWGCWC 1 cut(s) 134
BsiSI CCGG 2 cut(s) 211, 465
BslI CCNNNNNNNGG 1 cut(s) 464
BsmAI GTCTC 1 cut(s) 511
Bso31I GGTCTC 1 cut(s) 511
Bsp1286I GDGCHC 1 cut(s) 134
Bsp143I GATC 3 cut(s) 46, 173, 439
Bsp19I CCATGG 1 cut(s) 521
BspACI CCGC 1 cut(s) 580
BspCNI CTCAG 2 cut(s) 223, 414
BspHI TCATGA 1 cut(s) 442
BspLI GGNNCC 1 cut(s) 123
BspMI ACCTGC 1 cut(s) 599
BspTNI GGTCTC 1 cut(s) 511
BsrFI RCCGGY 1 cut(s) 464
BssAI RCCGGY 1 cut(s) 464
BssECI CCNNGG 2 cut(s) 408, 521
BssMI GATC 3 cut(s) 46, 173, 439
BssT1I CCWWGG 2 cut(s) 408, 521
Bst4CI ACNGT 2 cut(s) 281, 322
BstDEI CTNAG 3 cut(s) 231, 352, 401
BstDSI CCRYGG 1 cut(s) 521
BstEII GGTNACC 1 cut(s) 213
BstF5I GGATG 1 cut(s) 666
BstKTI GATC 3 cut(s) 49, 176, 442
BstMAI GTCTC 1 cut(s) 511
BstMBI GATC 3 cut(s) 46, 173, 439
BstMWI GCNNNNNNNGC 1 cut(s) 348
BstPI GGTNACC 1 cut(s) 213
BstSFI CTRYAG 1 cut(s) 221
BstSLI GKGCMC 1 cut(s) 134
BstV1I GCAGC 1 cut(s) 308
BstV2I GAAGAC 1 cut(s) 207
BstX2I RGATCY 1 cut(s) 173
BstYI RGATCY 1 cut(s) 173
BsuI GTATCC 1 cut(s) 569
BtgI CCRYGG 1 cut(s) 521
BtgZI GCGATG 1 cut(s) 352
BtsCI GGATG 1 cut(s) 666
BtsIMutI CAGTG 1 cut(s) 286
BveI ACCTGC 1 cut(s) 599
CciI TCATGA 1 cut(s) 442
Cfr10I RCCGGY 1 cut(s) 464
Cfr13I GGNCC 1 cut(s) 67
Csp6I GTAC 2 cut(s) 405, 550
CviAII CATG 4 cut(s) 135, 443, 477, 522
CviJI RGCY 7 cut(s) 15, 124, 140, 167, 252, 351, 526
CviKI_1 RGCY 7 cut(s) 15, 124, 140, 167, 252, 351, 526
CviQI GTAC 2 cut(s) 405, 550
DdeI CTNAG 3 cut(s) 231, 352, 401
DpnI GATC 3 cut(s) 48, 175, 441
DpnII GATC 3 cut(s) 46, 173, 439
Eco130I CCWWGG 2 cut(s) 408, 521
Eco31I GGTCTC 1 cut(s) 511
Eco47I GGWCC 1 cut(s) 67
Eco57I CTGAAG 2 cut(s) 219, 232
Eco91I GGTNACC 1 cut(s) 213
EcoO109I RGGNCCY 1 cut(s) 67
EcoO65I GGTNACC 1 cut(s) 213
EcoT14I CCWWGG 2 cut(s) 408, 521
ErhI CCWWGG 2 cut(s) 408, 521
FaeI CATG 4 cut(s) 138, 446, 480, 525
FatI CATG 4 cut(s) 134, 442, 476, 521
FauNDI CATATG 2 cut(s) 364, 589
FbaI TGATCA 1 cut(s) 439
Fnu4HI GCNGC 1 cut(s) 297
FokI GGATG 1 cut(s) 653
Fsp4HI GCNGC 1 cut(s) 297
FspBI CTAG 1 cut(s) 527
GluI GCNGC 1 cut(s) 297
GsaI CCCAGC 1 cut(s) 549
GsuI CTGGAG 1 cut(s) 140
HapII CCGG 2 cut(s) 211, 465
Hin1II CATG 4 cut(s) 138, 446, 480, 525
HinfI GANTC 2 cut(s) 226, 663
HpaII CCGG 2 cut(s) 211, 465
HphI GGTGA 3 cut(s) 207, 449, 609
Hpy166II GTNNAC 2 cut(s) 132, 552
Hpy188I TCNGA 3 cut(s) 311, 459, 568
Hpy188III TCNNGA 4 cut(s) 119, 230, 443, 623
Hpy8I GTNNAC 2 cut(s) 132, 552
HpyAV CCTTC 3 cut(s) 80, 256, 635
HpyCH4III ACNGT 2 cut(s) 281, 322
HpyCH4IV ACGT 1 cut(s) 634
HpyCH4V TGCA 6 cut(s) 23, 83, 132, 181, 342, 593
HpyF10VI GCNNNNNNNGC 1 cut(s) 348
HpyF3I CTNAG 3 cut(s) 231, 352, 401
HpySE526I ACGT 1 cut(s) 634
Hsp92II CATG 4 cut(s) 138, 446, 480, 525
Ksp22I TGATCA 1 cut(s) 439
Kzo9I GATC 3 cut(s) 46, 173, 439
LmnI GCTCC 2 cut(s) 121, 605
Lsp1109I GCAGC 1 cut(s) 308
LweI GCATC 1 cut(s) 329
MaeI CTAG 1 cut(s) 527
MaeII ACGT 1 cut(s) 634
MaeIII GTNAC 3 cut(s) 37, 213, 611
MalI GATC 3 cut(s) 48, 175, 441
MboI GATC 3 cut(s) 46, 173, 439
MboII GAAGA 2 cut(s) 170, 212
MfeI CAATTG 1 cut(s) 74
MflI RGATCY 1 cut(s) 173
MhlI GDGCHC 1 cut(s) 134
MluCI AATT 4 cut(s) 74, 90, 453, 540
MnlI CCTC 5 cut(s) 58, 218, 228, 392, 630
MseI TTAA 3 cut(s) 93, 303, 507
MspI CCGG 2 cut(s) 211, 465
MunI CAATTG 1 cut(s) 74
MwoI GCNNNNNNNGC 1 cut(s) 348
NcoI CCATGG 1 cut(s) 521
NdeI CATATG 2 cut(s) 364, 589
NdeII GATC 3 cut(s) 46, 173, 439
NlaIII CATG 4 cut(s) 138, 446, 480, 525
NlaIV GGNNCC 1 cut(s) 123
NmuCI GTSAC 2 cut(s) 213, 611
PagI TCATGA 1 cut(s) 442
PfeI GAWTC 2 cut(s) 226, 663
PkrI GCNGC 1 cut(s) 298
PpuMI RGGWCCY 1 cut(s) 67
PsiI TTATAA 1 cut(s) 452
Psp5II RGGWCCY 1 cut(s) 67
PspEI GGTNACC 1 cut(s) 213
PspFI CCCAGC 1 cut(s) 545
PspN4I GGNNCC 1 cut(s) 123
PspPI GGNCC 1 cut(s) 67
PspPPI RGGWCCY 1 cut(s) 67
PsuI RGATCY 1 cut(s) 173
RsaI GTAC 2 cut(s) 406, 551
RsaNI GTAC 2 cut(s) 405, 550
SaqAI TTAA 3 cut(s) 93, 303, 507
SatI GCNGC 1 cut(s) 297
Sau3AI GATC 3 cut(s) 46, 173, 439
Sau96I GGNCC 1 cut(s) 67
SduI GDGCHC 1 cut(s) 134
SfaNI GCATC 1 cut(s) 329
SfcI CTRYAG 1 cut(s) 221
SinI GGWCC 1 cut(s) 67
SmlI CTYRAG 1 cut(s) 621
SmoI CTYRAG 1 cut(s) 621
Sse9I AATT 4 cut(s) 74, 90, 453, 540
SsiI CCGC 1 cut(s) 580
SspI AATATT 1 cut(s) 115
SspMI CTAG 1 cut(s) 527
StyI CCWWGG 2 cut(s) 408, 521
TaaI ACNGT 2 cut(s) 281, 322
TaiI ACGT 1 cut(s) 637
TaqI TCGA 2 cut(s) 292, 384
TasI AATT 4 cut(s) 74, 90, 453, 540
TfiI GAWTC 2 cut(s) 226, 663
Tru1I TTAA 3 cut(s) 93, 303, 507
Tru9I TTAA 3 cut(s) 93, 303, 507
TscAI CASTG 1 cut(s) 286
TseFI GTSAC 2 cut(s) 213, 611
TseI GCWGC 1 cut(s) 296
Tsp45I GTSAC 2 cut(s) 213, 611
TspDTI ATGAA 4 cut(s) 171, 204, 300, 655
TspRI CASTG 1 cut(s) 286
VneI GTGCAC 1 cut(s) 130
VpaK11BI GGWCC 1 cut(s) 67
XcmI CCANNNNNNNNNTGG 1 cut(s) 132
XspI CTAG 1 cut(s) 527
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.