RLG00000015106

Serine carboxypeptidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0002263
Physical Location & Seq
Reverse (-)
61828645 .. 61830869
2225 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015106

Sequence Viewer

Length: 945 bp
ATGACAATTCTCCAGACTGCAAACCTATTGTTTGTGGATGCACCTGTTGGCACTGGTTTCTCTTATGCAACTGATGCATCAGAATACGCTACCTCCGATACAAAAACAGCAGCACAGTGGTTGAATGAGCACCCGCAATACCTCAAGGTTCAGTTGTTTGTTGGGGCTGATTCGTATTCAGGCGTATCGGCAACCATTGTTGTTGAACATATAATGGCTGGTAATGATGCCGGATTCAAGCCACGCCTGAATCTCAAGTCGGCTAAAAACAGCTGTAATTCAGATTTCTATGGAGCAACTGTTGATGAACCAGAATGTTACGAGGATGTTCAATTGATTGCAAGGCAAATTAAAGACATAAACAAAAACCATATTCTGGAGCCAAAATGCACATGGGCTTCACCAGTACCCGATGAAGATTCAGCTCGTCGATCTATGCAGGAATACGAATACCCCGAAGACTTCCTCCGGTCACCTCTAAAAAATCCTGAATTCTGTCACAACTTTAACTATGCGCTATCCTACGTATGGGCAAACGATGATGGTGTACGAGCGGCACTTAATATCAGAAATGGAACAGTATTTGATTGGAAGAGATGCAATAAGAGCTTGGATTACACATATGATGTGTCCAGTGTCCTAGAATATCATAAAAATCTCAGTACCAAGGGACTACAAGTTCTGATATTCAATGGTGATCATGACCTGACAATTCCGAACACTGGCACGGAAGAGTGGATAAAAAAATTGGATTTGACCGTTGTTAATGACTGGAGACCATGGCTAGTTGATGGTCAGATTGCAGGATACACCATCAAGTATTCAGAAAATGGATACCGCTTGACATATGCAACCTTAAAGGGGGCAGGTCACTCACCTCAAGAATACAAGCGTAGAGAAGGTTATGAAATGTTCGACAGGTTCATCCATTACTATCCCCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S10

Protein Analysis

315

Amino Acids

35.85

Weight (kDa)

5.22

Isoelectric Point (pI)

45.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 5 - 310 8.5e-53 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 857
AccB7I CCANNNNNTGG 1 cut(s) 376
AccBSI CCGCTC 1 cut(s) 554
AciI CCGC 3 cut(s) 134, 554, 838
AcsI RAATTY 1 cut(s) 491
AfaI GTAC 3 cut(s) 408, 549, 664
AfiI CCNNNNNNNGG 4 cut(s) 376, 528, 722, 861
AgsI TTSAA 5 cut(s) 124, 206, 238, 332, 691
AloI GAACNNNNNNTCC 2 cut(s) 663, 695
AluBI AGCT 3 cut(s) 273, 425, 609
AluI AGCT 3 cut(s) 273, 425, 609
Alw21I GWGCWC 1 cut(s) 132
Alw26I GTCTC 1 cut(s) 769
ApeKI GCWGC 1 cut(s) 110
ApoI RAATTY 1 cut(s) 491
AspLEI GCGC 1 cut(s) 517
AsuHPI GGTGA 4 cut(s) 393, 465, 707, 867
BbsI GAAGAC 1 cut(s) 465
Bbv12I GWGCWC 1 cut(s) 132
BbvI GCAGC 1 cut(s) 122
BccI CCATC 3 cut(s) 536, 785, 821
BciVI GTATCC 2 cut(s) 800, 827
BclI TGATCA 1 cut(s) 697
BcoDI GTCTC 1 cut(s) 769
BfaI CTAG 3 cut(s) 641, 785, 943
BfuAI ACCTGC 1 cut(s) 857
BfuI GTATCC 2 cut(s) 800, 827
BisI GCNGC 2 cut(s) 111, 555
BlsI GCNGC 2 cut(s) 112, 556
BmiI GGNNCC 1 cut(s) 381
BmsI GCATC 5 cut(s) 28, 64, 86, 217, 587
BpiI GAAGAC 1 cut(s) 465
BpmI CTGGAG 2 cut(s) 398, 793
BpuEI CTTGAG 3 cut(s) 128, 239, 864
BsaAI YACGTR 1 cut(s) 526
BsaI GGTCTC 1 cut(s) 769
BsaJI CCNNGG 2 cut(s) 666, 779
BsaWI WCCGGW 1 cut(s) 468
BsaXI ACNNNNNCTCC 4 cut(s) 77, 107, 285, 315
Bsc4I CCNNNNNNNGG 4 cut(s) 376, 528, 722, 861
Bse1I ACTGG 5 cut(s) 58, 404, 633, 727, 776
BseDI CCNNGG 2 cut(s) 666, 779
BseGI GGATG 3 cut(s) 43, 331, 924
BseLI CCNNNNNNNGG 4 cut(s) 376, 528, 722, 861
BseMII CTCAG 1 cut(s) 673
BseNI ACTGG 5 cut(s) 58, 404, 633, 727, 776
BseXI GCAGC 1 cut(s) 122
BsiHKAI GWGCWC 1 cut(s) 132
BsiSI CCGG 2 cut(s) 231, 469
BslFI GGGAC 1 cut(s) 684
BslI CCNNNNNNNGG 4 cut(s) 376, 528, 722, 861
BsmAI GTCTC 1 cut(s) 769
BsmFI GGGAC 1 cut(s) 684
Bso31I GGTCTC 1 cut(s) 769
Bsp1286I GDGCHC 1 cut(s) 132
Bsp143I GATC 2 cut(s) 431, 697
Bsp19I CCATGG 1 cut(s) 779
BspACI CCGC 3 cut(s) 134, 554, 838
BspCNI CTCAG 1 cut(s) 672
BspHI TCATGA 1 cut(s) 700
BspLI GGNNCC 1 cut(s) 381
BspMI ACCTGC 1 cut(s) 857
BspTNI GGTCTC 1 cut(s) 769
BsrBI CCGCTC 1 cut(s) 554
BsrI ACTGG 5 cut(s) 58, 404, 633, 727, 776
BssECI CCNNGG 2 cut(s) 666, 779
BssMI GATC 2 cut(s) 431, 697
BssT1I CCWWGG 2 cut(s) 666, 779
Bst4CI ACNGT 4 cut(s) 117, 301, 580, 760
Bst6I CTCTTC 2 cut(s) 587, 726
BstAPI GCANNNNNTGC 1 cut(s) 74
BstBAI YACGTR 1 cut(s) 526
BstDEI CTNAG 1 cut(s) 659
BstDSI CCRYGG 1 cut(s) 779
BstEII GGTNACC 1 cut(s) 471
BstF5I GGATG 3 cut(s) 43, 331, 924
BstHHI GCGC 1 cut(s) 517
BstKTI GATC 2 cut(s) 434, 700
BstMAI GTCTC 1 cut(s) 769
BstMBI GATC 2 cut(s) 431, 697
BstMWI GCNNNNNNNGC 2 cut(s) 74, 606
BstPI GGTNACC 1 cut(s) 471
BstSNI TACGTA 1 cut(s) 526
BstV1I GCAGC 1 cut(s) 122
BstV2I GAAGAC 1 cut(s) 465
BsuI GTATCC 2 cut(s) 800, 827
BtgI CCRYGG 1 cut(s) 779
BtsCI GGATG 3 cut(s) 43, 331, 924
BtsIMutI CAGTG 4 cut(s) 51, 122, 640, 720
BveI ACCTGC 1 cut(s) 857
CciI TCATGA 1 cut(s) 700
CfoI GCGC 1 cut(s) 517
Csp6I GTAC 3 cut(s) 407, 548, 663
CviAII CATG 3 cut(s) 393, 701, 780
CviQI GTAC 3 cut(s) 407, 548, 663
DdeI CTNAG 1 cut(s) 659
DpnI GATC 2 cut(s) 433, 699
DpnII GATC 2 cut(s) 431, 697
Eam1104I CTCTTC 2 cut(s) 587, 726
EarI CTCTTC 2 cut(s) 587, 726
Eco105I TACGTA 1 cut(s) 526
Eco130I CCWWGG 2 cut(s) 666, 779
Eco31I GGTCTC 1 cut(s) 769
Eco91I GGTNACC 1 cut(s) 471
EcoO65I GGTNACC 1 cut(s) 471
EcoRI GAATTC 1 cut(s) 491
EcoT14I CCWWGG 2 cut(s) 666, 779
EcoT22I ATGCAT 1 cut(s) 79
ErhI CCWWGG 2 cut(s) 666, 779
FaeI CATG 3 cut(s) 396, 704, 783
FaqI GGGAC 1 cut(s) 684
FatI CATG 3 cut(s) 392, 700, 779
FauI CCCGC 1 cut(s) 141
FauNDI CATATG 2 cut(s) 622, 847
FbaI TGATCA 1 cut(s) 697
Fnu4HI GCNGC 2 cut(s) 111, 555
FokI GGATG 3 cut(s) 50, 338, 911
Fsp4HI GCNGC 2 cut(s) 111, 555
FspBI CTAG 3 cut(s) 641, 785, 943
GlaI GCGC 1 cut(s) 516
GluI GCNGC 2 cut(s) 111, 555
GsuI CTGGAG 2 cut(s) 398, 793
HapII CCGG 2 cut(s) 231, 469
HhaI GCGC 1 cut(s) 517
Hin1II CATG 3 cut(s) 396, 704, 783
Hin6I GCGC 1 cut(s) 515
HinP1I GCGC 1 cut(s) 515
HinfI GANTC 4 cut(s) 170, 234, 250, 419
HpaII CCGG 2 cut(s) 231, 469
HphI GGTGA 4 cut(s) 393, 465, 707, 867
Hpy166II GTNNAC 1 cut(s) 548
Hpy188I TCNGA 8 cut(s) 82, 97, 283, 569, 684, 717, 798, 826
Hpy188III TCNNGA 5 cut(s) 13, 377, 488, 701, 881
Hpy8I GTNNAC 1 cut(s) 548
Hpy99I CGWCG 1 cut(s) 432
HpyAV CCTTC 1 cut(s) 893
HpyCH4III ACNGT 4 cut(s) 117, 301, 580, 760
HpyCH4IV ACGT 1 cut(s) 525
HpyF10VI GCNNNNNNNGC 2 cut(s) 74, 606
HpyF3I CTNAG 1 cut(s) 659
HpySE526I ACGT 1 cut(s) 525
Hsp92II CATG 3 cut(s) 396, 704, 783
HspAI GCGC 1 cut(s) 515
Ksp22I TGATCA 1 cut(s) 697
Kzo9I GATC 2 cut(s) 431, 697
LmnI GCTCC 2 cut(s) 293, 379
Lsp1109I GCAGC 1 cut(s) 122
LweI GCATC 5 cut(s) 28, 64, 86, 217, 587
MaeI CTAG 3 cut(s) 641, 785, 943
MaeII ACGT 1 cut(s) 525
MaeIII GTNAC 4 cut(s) 317, 471, 497, 869
MalI GATC 2 cut(s) 433, 699
MbiI CCGCTC 1 cut(s) 554
MboI GATC 2 cut(s) 431, 697
MboII GAAGA 4 cut(s) 428, 470, 604, 743
MfeI CAATTG 1 cut(s) 332
MhlI GDGCHC 1 cut(s) 132
MluCI AATT 7 cut(s) 6, 277, 332, 348, 491, 711, 746
MnlI CCTC 6 cut(s) 103, 152, 316, 476, 486, 888
Mph1103I ATGCAT 1 cut(s) 79
MseI TTAA 5 cut(s) 351, 507, 561, 765, 857
MspA1I CMGCKG 1 cut(s) 273
MspI CCGG 2 cut(s) 231, 469
MunI CAATTG 1 cut(s) 332
MwoI GCNNNNNNNGC 2 cut(s) 74, 606
NcoI CCATGG 1 cut(s) 779
NdeI CATATG 2 cut(s) 622, 847
NdeII GATC 2 cut(s) 431, 697
NlaIII CATG 3 cut(s) 396, 704, 783
NlaIV GGNNCC 1 cut(s) 381
NmuCI GTSAC 3 cut(s) 471, 497, 869
NsiI ATGCAT 1 cut(s) 79
PagI TCATGA 1 cut(s) 700
PcsI WCGNNNNNNNCGW 2 cut(s) 93, 453
PfeI GAWTC 4 cut(s) 170, 234, 250, 419
PflMI CCANNNNNTGG 1 cut(s) 376
PkrI GCNGC 2 cut(s) 112, 556
Ppu21I YACGTR 1 cut(s) 526
PspEI GGTNACC 1 cut(s) 471
PspN4I GGNNCC 1 cut(s) 381
PvuII CAGCTG 1 cut(s) 273
RsaI GTAC 3 cut(s) 408, 549, 664
RsaNI GTAC 3 cut(s) 407, 548, 663
SaqAI TTAA 5 cut(s) 351, 507, 561, 765, 857
SatI GCNGC 2 cut(s) 111, 555
Sau3AI GATC 2 cut(s) 431, 697
SduI GDGCHC 1 cut(s) 132
SfaNI GCATC 5 cut(s) 28, 64, 86, 217, 587
SmlI CTYRAG 3 cut(s) 143, 254, 879
SmoI CTYRAG 3 cut(s) 143, 254, 879
SnaBI TACGTA 1 cut(s) 526
Sse9I AATT 7 cut(s) 6, 277, 332, 348, 491, 711, 746
SsiI CCGC 3 cut(s) 134, 554, 838
SspMI CTAG 3 cut(s) 641, 785, 943
StyI CCWWGG 2 cut(s) 666, 779
TaaI ACNGT 4 cut(s) 117, 301, 580, 760
TaiI ACGT 1 cut(s) 528
TaqI TCGA 2 cut(s) 430, 915
TasI AATT 7 cut(s) 6, 277, 332, 348, 491, 711, 746
TauI GCSGC 1 cut(s) 557
TfiI GAWTC 4 cut(s) 170, 234, 250, 419
Tru1I TTAA 5 cut(s) 351, 507, 561, 765, 857
Tru9I TTAA 5 cut(s) 351, 507, 561, 765, 857
TscAI CASTG 4 cut(s) 58, 122, 640, 727
TseFI GTSAC 3 cut(s) 471, 497, 869
TseI GCWGC 1 cut(s) 110
Tsp45I GTSAC 3 cut(s) 471, 497, 869
TspDTI ATGAA 4 cut(s) 321, 429, 913, 921
TspGWI ACGGA 1 cut(s) 743
TspRI CASTG 4 cut(s) 58, 122, 640, 727
Van91I CCANNNNNTGG 1 cut(s) 376
XapI RAATTY 1 cut(s) 491
XcmI CCANNNNNNNNNTGG 1 cut(s) 390
XspI CTAG 3 cut(s) 641, 785, 943
Zsp2I ATGCAT 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.