Rh6DG039500

Serine carboxypeptidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0002263
Physical Location & Seq
Forward (+)
4257425 .. 4260532
3108 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG039500.1

Sequence Viewer

Length: 1122 bp
ATGAACTGGGTATGTTTGCATTTGCTTTTTGTTTTGGTTTTCTCTGCAAGTTCAGTTCTTTGTGGTACATTGGTCAAGTCTATTCCGGGGTTCGATGGTGATCTTCCCTTTAAGCTTTACACTGGTTATGTCAGTGTGGGTAAATCAGAGATGTTTTACTACTTCATCGAGTCAGAAGGAAACCCCAAAGAAGATCCTTTGTTGTTGTGGTATAGTGGAGGCCCTGGTTGTTCTGTTCTCAATGGTCTCATTTACGAAAATGGTCCTATGGTTTTCAATTATACAGCTTATGAAGGAGGGTTACCATCTACATATTACTACCCATACTCATGGACAAGGACTGCAAGTGTATTGTTTGTGGATGCACCTGTTGGCACTGGTTTCTCCTATGCAACTAGTGCAGATGAATTCCCTTCTTCAGATTTAAAAACAGCAGCACAGGTTTATGGATTTTTGAGGGAGTGGTTGGAAGAGCACCCACAATTTCTCAAAGTTCAGCTATTTATTGGGGCTGACTCATATTCAGGCCTGACGGGCACCATCGTTGTCAAATACATAATAGATGACAATGATGCTGGAGTACTGCCACGACTCAACCTCAAGGGGTATGTTCTAGGATGTCCAACTACTGATCAAACTCTCAATGAGAATTCAAGGTATGTTTATTCTCATCGAATGGGGCTTATATCAGATGAACTCTACGAGGCAGCTAAAGAAAGCTGCAATTCAAGCTTCTATGGTGCTACCACGTCAGAGCCAGAATGCTATGAGGACGTTCAATTGATGGCAAAGCAAATTAAAGACATAAACAAACTCTGCATTCTAGAGCCAAAGTGCACGTGGGCTTCCCCAGACCAAGATGGAGAAACAGCTCGTAGATATTTACATGAAAATCCCGAAGAATTCATCCGGTCACTTCCAAAAGATCCTGAATACTACTGTCGAAACTTTAATTATATGCTGGCTTATGTATGGGCAAACGATGAAGGTGTAAGAAAGGCACTTAATGTCCGAGAGGTATGTTTCTCCGTCTCTTGGTCCGATTTGGTTGAGTTTTCTGTGGATTTTGGTTGTTCAGCTCTGAGGAGCTGTTCTACTCCGGTATGGTTGCCATGTAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S10

Protein Analysis

373

Amino Acids

41.97

Weight (kDa)

4.6

Isoelectric Point (pI)

34.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 29 - 341 4.4e-77 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 536
AclWI GGATC 2 cut(s) 188, 920
AcsI RAATTY 3 cut(s) 407, 649, 902
AcuI CTGAAG 1 cut(s) 402
AcvI CACGTG 1 cut(s) 840
AfaI GTAC 2 cut(s) 67, 582
AfiI CCNNNNNNNGG 1 cut(s) 1035
AgsI TTSAA 4 cut(s) 277, 654, 729, 779
AhlI ACTAGT 1 cut(s) 395
AjiI CACGTC 1 cut(s) 750
AjnI CCWGG 1 cut(s) 223
AluBI AGCT 9 cut(s) 115, 287, 499, 710, 720, 732, 872, 1079, 1089
AluI AGCT 9 cut(s) 115, 287, 499, 710, 720, 732, 872, 1079, 1089
Alw21I GWGCWC 2 cut(s) 477, 839
Alw26I GTCTC 2 cut(s) 251, 1036
Alw44I GTGCAC 1 cut(s) 835
AlwI GGATC 2 cut(s) 188, 920
AoxI GGCC 2 cut(s) 220, 526
ApaLI GTGCAC 1 cut(s) 835
ApeKI GCWGC 3 cut(s) 434, 707, 720
ApoI RAATTY 3 cut(s) 407, 649, 902
AspS9I GGNCC 3 cut(s) 221, 263, 1038
AsuC2I CCSGG 1 cut(s) 87
AsuHPI GGTGA 1 cut(s) 110
AvaII GGWCC 2 cut(s) 263, 1038
BaeGI GKGCMC 2 cut(s) 539, 839
BaeI ACNNNNGTAYC 2 cut(s) 57, 90
BanI GGYRCC 1 cut(s) 536
BarI GAAGNNNNNNTAC 2 cut(s) 285, 317
BbrPI CACGTG 1 cut(s) 840
Bbv12I GWGCWC 2 cut(s) 477, 839
BbvI GCAGC 3 cut(s) 446, 707, 719
BccI CCATC 5 cut(s) 89, 313, 548, 778, 854
BciT130I CCWGG 1 cut(s) 225
BclI TGATCA 1 cut(s) 631
BcnI CCSGG 1 cut(s) 87
BcoDI GTCTC 2 cut(s) 251, 1036
BcuI ACTAGT 1 cut(s) 395
BfaI CTAG 3 cut(s) 396, 614, 824
BglI GCCNNNNNGGC 1 cut(s) 534
BisI GCNGC 3 cut(s) 435, 708, 721
BlsI GCNGC 3 cut(s) 436, 709, 722
BmcAI AGTACT 1 cut(s) 582
Bme1390I CCNGG 2 cut(s) 87, 225
Bme18I GGWCC 2 cut(s) 263, 1038
BmgBI CACGTC 1 cut(s) 750
BmgT120I GGNCC 3 cut(s) 221, 263, 1038
BmiI GGNNCC 1 cut(s) 538
BmrFI CCNGG 2 cut(s) 87, 225
BmrI ACTGGG 1 cut(s) 16
BmsI GCATC 2 cut(s) 352, 562
BmuI ACTGGG 1 cut(s) 16
BpmI CTGGAG 1 cut(s) 597
BpuEI CTTGAG 1 cut(s) 584
BpuMI CCSGG 1 cut(s) 87
BsaAI YACGTR 1 cut(s) 840
BsaBI GATNNNNATC 1 cut(s) 99
BsaI GGTCTC 1 cut(s) 251
BsaJI CCNNGG 2 cut(s) 86, 223
BsaWI WCCGGW 2 cut(s) 909, 1099
Bsc4I CCNNNNNNNGG 1 cut(s) 1035
Bse1I ACTGG 3 cut(s) 11, 127, 382
Bse8I GATNNNNATC 1 cut(s) 99
BseBI CCWGG 1 cut(s) 225
BseDI CCNNGG 2 cut(s) 86, 223
BseGI GGATG 3 cut(s) 367, 623, 906
BseJI GATNNNNATC 1 cut(s) 99
BseLI CCNNNNNNNGG 1 cut(s) 1035
BseMII CTCAG 1 cut(s) 1073
BseNI ACTGG 3 cut(s) 11, 127, 382
BseRI GAGGAG 1 cut(s) 1099
BseSI GKGCMC 2 cut(s) 539, 839
BseXI GCAGC 3 cut(s) 446, 707, 719
BsgI GTGCAG 1 cut(s) 420
BshFI GGCC 2 cut(s) 222, 528
BshNI GGYRCC 1 cut(s) 536
BsiHKAI GWGCWC 2 cut(s) 477, 839
BsiSI CCGG 3 cut(s) 86, 910, 1100
BslI CCNNNNNNNGG 1 cut(s) 1035
BsmAI GTCTC 2 cut(s) 251, 1036
BsmBI CGTCTC 1 cut(s) 1036
BsmI GAATGC 2 cut(s) 767, 819
BsnI GGCC 2 cut(s) 222, 528
Bso31I GGTCTC 1 cut(s) 251
Bsp1286I GDGCHC 3 cut(s) 477, 539, 839
Bsp143I GATC 4 cut(s) 100, 193, 631, 925
BspANI GGCC 2 cut(s) 222, 528
BspCNI CTCAG 1 cut(s) 1074
BspLI GGNNCC 1 cut(s) 538
BspPI GGATC 2 cut(s) 188, 920
BspQI GCTCTTC 1 cut(s) 465
BspT107I GGYRCC 1 cut(s) 536
BspTNI GGTCTC 1 cut(s) 251
BsrI ACTGG 3 cut(s) 11, 127, 382
BssECI CCNNGG 2 cut(s) 86, 223
BssMI GATC 4 cut(s) 100, 193, 631, 925
Bst2UI CCWGG 1 cut(s) 225
Bst4CI ACNGT 1 cut(s) 941
Bst6I CTCTTC 1 cut(s) 465
BstAPI GCANNNNNTGC 1 cut(s) 398
BstBAI YACGTR 1 cut(s) 840
BstC8I GCNNGC 1 cut(s) 963
BstDEI CTNAG 1 cut(s) 1082
BstEII GGTNACC 1 cut(s) 300
BstF5I GGATG 3 cut(s) 367, 623, 906
BstKTI GATC 4 cut(s) 103, 196, 634, 928
BstMAI GTCTC 2 cut(s) 251, 1036
BstMBI GATC 4 cut(s) 100, 193, 631, 925
BstMWI GCNNNNNNNGC 3 cut(s) 398, 534, 729
BstNI CCWGG 1 cut(s) 225
BstPI GGTNACC 1 cut(s) 300
BstSCI CCNGG 2 cut(s) 85, 223
BstSLI GKGCMC 2 cut(s) 539, 839
BstV1I GCAGC 3 cut(s) 446, 707, 719
BstX2I RGATCY 2 cut(s) 193, 925
BstXI CCANNNNNNTGG 1 cut(s) 330
BstYI RGATCY 2 cut(s) 193, 925
BsuRI GGCC 2 cut(s) 222, 528
BtrI CACGTC 1 cut(s) 750
BtsCI GGATG 3 cut(s) 367, 623, 906
BtsIMutI CAGTG 3 cut(s) 120, 139, 375
Cac8I GCNNGC 1 cut(s) 963
Cfr13I GGNCC 3 cut(s) 221, 263, 1038
Csp6I GTAC 2 cut(s) 66, 581
CviAII CATG 3 cut(s) 330, 887, 1113
CviQI GTAC 2 cut(s) 66, 581
DdeI CTNAG 1 cut(s) 1082
DpnI GATC 4 cut(s) 102, 195, 633, 927
DpnII GATC 4 cut(s) 100, 193, 631, 925
DraI TTTAAA 1 cut(s) 426
Eam1104I CTCTTC 1 cut(s) 465
EarI CTCTTC 1 cut(s) 465
Eco147I AGGCCT 1 cut(s) 528
Eco31I GGTCTC 1 cut(s) 251
Eco47I GGWCC 2 cut(s) 263, 1038
Eco57I CTGAAG 1 cut(s) 402
Eco72I CACGTG 1 cut(s) 840
Eco91I GGTNACC 1 cut(s) 300
EcoO109I RGGNCCY 1 cut(s) 221
EcoO65I GGTNACC 1 cut(s) 300
EcoRI GAATTC 3 cut(s) 407, 649, 902
EcoRII CCWGG 1 cut(s) 223
Esp3I CGTCTC 1 cut(s) 1036
FaeI CATG 3 cut(s) 333, 890, 1116
FatI CATG 3 cut(s) 329, 886, 1112
FbaI TGATCA 1 cut(s) 631
Fnu4HI GCNGC 3 cut(s) 435, 708, 721
FokI GGATG 3 cut(s) 374, 630, 893
Fsp4HI GCNGC 3 cut(s) 435, 708, 721
FspBI CTAG 3 cut(s) 396, 614, 824
GluI GCNGC 3 cut(s) 435, 708, 721
GsuI CTGGAG 1 cut(s) 597
HaeIII GGCC 2 cut(s) 222, 528
HapII CCGG 3 cut(s) 86, 910, 1100
Hin1II CATG 3 cut(s) 333, 890, 1116
HindIII AAGCTT 2 cut(s) 113, 730
HinfI GANTC 3 cut(s) 170, 515, 591
HpaII CCGG 3 cut(s) 86, 910, 1100
HphI GGTGA 1 cut(s) 110
Hpy166II GTNNAC 1 cut(s) 837
Hpy188I TCNGA 8 cut(s) 148, 175, 421, 691, 754, 1013, 1042, 1083
Hpy188III TCNNGA 3 cut(s) 824, 896, 929
Hpy8I GTNNAC 1 cut(s) 837
HpyAV CCTTC 4 cut(s) 170, 287, 423, 980
HpyCH4III ACNGT 1 cut(s) 941
HpyCH4IV ACGT 3 cut(s) 749, 774, 839
HpyCH4V TGCA 9 cut(s) 19, 47, 344, 365, 392, 401, 723, 819, 837
HpyF10VI GCNNNNNNNGC 3 cut(s) 398, 534, 729
HpyF3I CTNAG 1 cut(s) 1082
HpySE526I ACGT 3 cut(s) 749, 774, 839
Hsp92II CATG 3 cut(s) 333, 890, 1116
Ksp22I TGATCA 1 cut(s) 631
Kzo9I GATC 4 cut(s) 100, 193, 631, 925
LguI GCTCTTC 1 cut(s) 465
LmnI GCTCC 1 cut(s) 1086
Lsp1109I GCAGC 3 cut(s) 446, 707, 719
LweI GCATC 2 cut(s) 352, 562
MaeI CTAG 3 cut(s) 396, 614, 824
MaeII ACGT 3 cut(s) 749, 774, 839
MaeIII GTNAC 2 cut(s) 300, 912
MalI GATC 4 cut(s) 102, 195, 633, 927
MboI GATC 4 cut(s) 100, 193, 631, 925
MboII GAAGA 5 cut(s) 95, 203, 408, 482, 911
MfeI CAATTG 1 cut(s) 779
MflI RGATCY 2 cut(s) 193, 925
MhlI GDGCHC 3 cut(s) 477, 539, 839
MluCI AATT 9 cut(s) 277, 407, 482, 649, 724, 779, 795, 902, 952
MlyI GAGTC 3 cut(s) 179, 509, 585
MmeI TCCRAC 2 cut(s) 447, 647
MnlI CCTC 8 cut(s) 212, 290, 450, 608, 697, 763, 1009, 1077
MseI TTAA 5 cut(s) 111, 425, 798, 951, 1005
MslI CAYNNNNRTG 1 cut(s) 328
MspI CCGG 3 cut(s) 86, 910, 1100
MspR9I CCNGG 2 cut(s) 87, 225
MunI CAATTG 1 cut(s) 779
Mva1269I GAATGC 2 cut(s) 767, 819
MvaI CCWGG 1 cut(s) 225
MwoI GCNNNNNNNGC 3 cut(s) 398, 534, 729
NciI CCSGG 1 cut(s) 87
NdeII GATC 4 cut(s) 100, 193, 631, 925
NlaIII CATG 3 cut(s) 333, 890, 1116
NlaIV GGNNCC 1 cut(s) 538
NmuCI GTSAC 1 cut(s) 912
PceI AGGCCT 1 cut(s) 528
PciSI GCTCTTC 1 cut(s) 465
PctI GAATGC 2 cut(s) 767, 819
PkrI GCNGC 3 cut(s) 436, 709, 722
PleI GAGTC 3 cut(s) 178, 509, 585
PmaCI CACGTG 1 cut(s) 840
PmlI CACGTG 1 cut(s) 840
PpsI GAGTC 3 cut(s) 178, 509, 585
Ppu21I YACGTR 1 cut(s) 840
Psp6I CCWGG 1 cut(s) 223
PspCI CACGTG 1 cut(s) 840
PspEI GGTNACC 1 cut(s) 300
PspGI CCWGG 1 cut(s) 223
PspN4I GGNNCC 1 cut(s) 538
PspPI GGNCC 3 cut(s) 221, 263, 1038
PsuI RGATCY 2 cut(s) 193, 925
RsaI GTAC 2 cut(s) 67, 582
RsaNI GTAC 2 cut(s) 66, 581
RseI CAYNNNNRTG 1 cut(s) 328
SapI GCTCTTC 1 cut(s) 465
SaqAI TTAA 5 cut(s) 111, 425, 798, 951, 1005
SatI GCNGC 3 cut(s) 435, 708, 721
Sau3AI GATC 4 cut(s) 100, 193, 631, 925
Sau96I GGNCC 3 cut(s) 221, 263, 1038
ScaI AGTACT 1 cut(s) 582
SchI GAGTC 3 cut(s) 179, 509, 585
ScrFI CCNGG 2 cut(s) 87, 225
SduI GDGCHC 3 cut(s) 477, 539, 839
SfaNI GCATC 2 cut(s) 352, 562
SinI GGWCC 2 cut(s) 263, 1038
SmiMI CAYNNNNRTG 1 cut(s) 328
SmlI CTYRAG 1 cut(s) 599
SmoI CTYRAG 1 cut(s) 599
SpeI ACTAGT 1 cut(s) 395
Sse9I AATT 9 cut(s) 277, 407, 482, 649, 724, 779, 795, 902, 952
SseBI AGGCCT 1 cut(s) 528
SspMI CTAG 3 cut(s) 396, 614, 824
StuI AGGCCT 1 cut(s) 528
StyD4I CCNGG 2 cut(s) 85, 223
TaaI ACNGT 1 cut(s) 941
TaiI ACGT 3 cut(s) 752, 777, 842
TaqI TCGA 4 cut(s) 93, 168, 673, 943
TasI AATT 9 cut(s) 277, 407, 482, 649, 724, 779, 795, 902, 952
TatI WGTACW 1 cut(s) 580
Tru1I TTAA 5 cut(s) 111, 425, 798, 951, 1005
Tru9I TTAA 5 cut(s) 111, 425, 798, 951, 1005
TscAI CASTG 3 cut(s) 127, 139, 382
TseFI GTSAC 1 cut(s) 912
TseI GCWGC 3 cut(s) 434, 707, 720
Tsp45I GTSAC 1 cut(s) 912
TspDTI ATGAA 8 cut(s) 17, 154, 306, 420, 708, 895, 903, 999
TspGWI ACGGA 1 cut(s) 1018
TspRI CASTG 3 cut(s) 127, 139, 382
VneI GTGCAC 1 cut(s) 835
VpaK11BI GGWCC 2 cut(s) 263, 1038
XapI RAATTY 3 cut(s) 407, 649, 902
XbaI TCTAGA 1 cut(s) 823
XcmI CCANNNNNNNNNTGG 1 cut(s) 837
XspI CTAG 3 cut(s) 396, 614, 824
ZrmI AGTACT 1 cut(s) 582
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.