Rorug05G0534900

Serine carboxypeptidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000102
Physical Location & Seq
Forward (+)
72314808 .. 72318999
4192 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0534900.1

Sequence Viewer

Length: 273 bp
ATGGAGTATTTCAGTCAGAAAAAGCCTCAAGCCTATTGCAAACCACCGGTTGTTGTTAAGCCGAACTGGAATCCCAGAGATAAGGAGCAGATGAGGATAGTGAAGGAGGCATTGCACTTGTCTACGGTTCCCTCTAGTGTTACGTGCCGCGAAGTGGAGCAGAAGAGGGTTCTGGAGTTCTGCAAGTCATGCATAGAGCAAGAGAAGGCTCATGGATACAGTTTTTGTATTACAATTTGGAGAAAATTTGAAGCCAAAATGATGAAGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S10

Protein Analysis

90

Amino Acids

10.7

Weight (kDa)

9.18

Isoelectric Point (pI)

38.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000102)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33540 AT1G33540 AT1G73270 AT1G73270 AT1G73280 AT1G73280 AT1G73280 AT1G73280 AT1G73290 AT1G73290 AT1G73290 AT1G73300 AT1G73300 AT1G73310 AT1G73310 AT1G73310 AT2G22920 AT2G22920 AT2G22920 AT2G22920 AT2G22960 AT2G22970 AT2G22970 AT2G22970 AT2G22970 AT2G22980 AT2G22980 AT2G22980 AT2G22980 AT2G22980 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G23000 AT2G23000 AT2G23010 AT2G23010 AT3G10450 AT3G10450 AT3G10450 AT3G10450 AT3G12203 AT3G12203 AT3G12203 AT3G12220 AT3G12220 AT3G12220 AT3G12230 AT3G12240 AT5G09640 AT5G36180 AT5G36180 AT5G36180 AT5G36180 AT5G36180
fragaria_vesca FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_2g03550 FvH4_2g03550 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03570 FvH4_2g03570 FvH4_2g03570 FvH4_2g32860 FvH4_2g32860 FvH4_2g32860 FvH4_6g45780
malus_domestica MD05G1102900.v1.1 MD05G1103100.v1.1 MD05G1103400.v1.1 MD05G1103600.v1.1 MD15G1067200.v1.1 MD15G1299100.v1.1 MD15G1299200.v1.1
prunus_persica Prupe.6G218600_v2.0.a1 Prupe.6G218800_v2.0.a1 Prupe.8G129900_v2.0.a1 Prupe.8G130000_v2.0.a1 Prupe.8G135600_v2.0.a1 Prupe.8G135600_v2.0.a1 Prupe.8G147500_v2.0.a1 Prupe.8G147500_v2.0.a1 Prupe.8G147600_v2.0.a1 Prupe.8G147700_v2.0.a1 Prupe.8G147800_v2.0.a1 Prupe.8G147900_v2.0.a1 Prupe.8G147900_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148300_v2.0.a1
pyrus_communis pycom05g10060 pycom08g20430 pycom10g09380 pycom15g06370
rosa_chinensis RchiOBHm_Chr2g0108421 RchiOBHm_Chr2g0155051 RchiOBHm_Chr2g0176791 RchiOBHm_Chr5g0035721 RchiOBHm_Chr5g0035731 RchiOBHm_Chr5g0043261 RchiOBHm_Chr6g0249011 RchiOBHm_Chr6g0249021 RchiOBHm_Chr6g0249041 RchiOBHm_Chr6g0249051 RchiOBHm_Chr6g0249071 RchiOBHm_Chr6g0249091 RchiOBHm_Chr6g0249111 RchiOBHm_Chr6g0249131 RchiOBHm_Chr6g0249151 RchiOBHm_Chr6g0252461 RchiOBHm_Chr6g0252481 RchiOBHm_Chr6g0252491
rosa_laevigata RLG00000001434 RLG00000015094 RLG00000015095 RLG00000015096 RLG00000015099 RLG00000015101 RLG00000015103 RLG00000017668
rosa_multiflora Rmu_co7960301.1_g000001 Rmu_co8316227.1_g000001 Rmu_co8338197.1_g000001 Rmu_co8348961.1_g000001 Rmu_sc0000290.1_g000001 Rmu_sc0000290.1_g000008 Rmu_sc0001762.1_g000019 Rmu_sc0001762.1_g000023 Rmu_sc0002016.1_g000008 Rmu_sc0002016.1_g000013 Rmu_sc0002016.1_g000016 Rmu_sc0002372.1_g000025 Rmu_sc0003692.1_g000002 Rmu_sc0003692.1_g000012 Rmu_sc0003780.1_g000008 Rmu_sc0003829.1_g000040 Rmu_sc0004823.1_g000035 Rmu_sc0004832.1_g000025 Rmu_sc0006782.1_g000011 Rmu_sc0006782.1_g000015 Rmu_sc0007382.1_g000001 Rmu_sc0009208.1_g000009 Rmu_sc0017474.1_g000001 Rmu_sc0026593.1_g000002 Rmu_sc0028609.1_g000001 Rmu_ssc0000007.1_g000002
rosa_roxburghii Rroxscaffold_1G00023310 Rroxscaffold_2G00135160 Rroxscaffold_2G00135410 Rroxscaffold_7G00212680 Rroxscaffold_7G00212690 Rroxscaffold_7G00212710 Rroxscaffold_7G00212730 Rroxscaffold_7G00212740 Rroxscaffold_7G00212770 Rroxscaffold_7G00212780
rosa_rugosa Rorug02G0152900 Rorug02G0153000 Rorug02G0153100 Rorug02G0153200 Rorug02G0153300 Rorug03G0171900 Rorug04G0031100 Rorug04G0031100 Rorug04G0031100 Rorug05G0033600 Rorug05G0033700 Rorug05G0033700 Rorug05G0534900 Rorug05G0534900 Rorug05G0535000 Rorug05G0535100 Rorug05G0535200 Rorug05G0535300 Rorug05G0535400.1 Rorug05G0535500.1 Rorug05G0535600 Rorug05G0535700 Rorug05G0535900 Rorug05G0536000.1 Rorug05G0536100.1 Rorug05G0536200 Rorug05G0536200 Rorug05G0536300 Rorug06G0002300
rosa_samantha Rh1AG086800 Rh1BG137200 Rh2AG201800 Rh2BG214700 Rh2CG205900 Rh2CG650900 Rh2DG209100 Rh2DG683600 Rh2DG701600 Rh4DG048600 Rh5BG257100 Rh5BG296800 Rh5DG266200 Rh5DG306500 Rh6AG052300 Rh6AG052500 Rh6BG009400 Rh6BG045800 Rh6BG046000 Rh6BG046100 Rh6BG046300 Rh6BG046400 Rh6BG046500 Rh6CG044400 Rh6CG044500 Rh6CG044600 Rh6CG044900 Rh6CG045100 Rh6CG045200 Rh6CG178800 Rh6DG039600 Rh6DG039800 Rh6DG040100 Rh6DG040600 Rh6DG040800 Rh6DG040900 Rh7AG465600 Rh7CG509300 Rh7DG476900
rosa_wichuraiana Rw0G003830 Rw1G008040 Rw2G016060 Rw2G016130 Rw2G053970 Rw4G021320 Rw6G004520 Rw6G004560 Rw6G004640 Rw6G004660 Rw6G004670 Rw6G004680 Rw6G004700 Rw6G004720 Rw6G004730

Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 122
AccII CGCG 1 cut(s) 150
AciI CCGC 1 cut(s) 148
AcsI RAATTY 1 cut(s) 245
AfiI CCNNNNNNNGG 1 cut(s) 154
AgeI ACCGGT 1 cut(s) 46
AgsI TTSAA 1 cut(s) 251
ApoI RAATTY 1 cut(s) 245
AsiGI ACCGGT 1 cut(s) 46
BciVI GTATCC 1 cut(s) 209
BfaI CTAG 1 cut(s) 135
BfuI GTATCC 1 cut(s) 209
BisI GCNGC 1 cut(s) 148
BlsI GCNGC 1 cut(s) 149
BmiI GGNNCC 1 cut(s) 129
BpmI CTGGAG 1 cut(s) 194
BpuEI CTTGAG 1 cut(s) 12
BsaAI YACGTR 1 cut(s) 144
BsaWI WCCGGW 1 cut(s) 46
Bsc4I CCNNNNNNNGG 1 cut(s) 154
Bse118I RCCGGY 1 cut(s) 46
Bse1I ACTGG 1 cut(s) 71
Bse3DI GCAATG 1 cut(s) 110
BseLI CCNNNNNNNGG 1 cut(s) 154
BseMI GCAATG 1 cut(s) 110
BseNI ACTGG 1 cut(s) 71
Bsh1236I CGCG 1 cut(s) 150
BshTI ACCGGT 1 cut(s) 46
BsiSI CCGG 1 cut(s) 47
BslI CCNNNNNNNGG 1 cut(s) 154
BspACI CCGC 1 cut(s) 148
BspFNI CGCG 1 cut(s) 150
BspLI GGNNCC 1 cut(s) 129
BsrDI GCAATG 1 cut(s) 110
BsrFI RCCGGY 1 cut(s) 46
BsrI ACTGG 1 cut(s) 71
BssAI RCCGGY 1 cut(s) 46
Bst4CI ACNGT 2 cut(s) 127, 221
Bst6I CTCTTC 1 cut(s) 158
BstAPI GCANNNNNTGC 1 cut(s) 189
BstBAI YACGTR 1 cut(s) 144
BstFNI CGCG 1 cut(s) 150
BstMWI GCNNNNNNNGC 1 cut(s) 189
BstUI CGCG 1 cut(s) 150
BsuI GTATCC 1 cut(s) 209
Cfr10I RCCGGY 1 cut(s) 46
CspAI ACCGGT 1 cut(s) 46
CviAII CATG 2 cut(s) 189, 212
CviJI RGCY 5 cut(s) 25, 32, 61, 209, 254
CviKI_1 RGCY 5 cut(s) 25, 32, 61, 209, 254
Eam1104I CTCTTC 1 cut(s) 158
EarI CTCTTC 1 cut(s) 158
EcoT22I ATGCAT 1 cut(s) 194
FaeI CATG 2 cut(s) 192, 215
FaiI YATR 3 cut(s) 190, 194, 213
FatI CATG 2 cut(s) 188, 211
FblI GTMKAC 1 cut(s) 122
Fnu4HI GCNGC 1 cut(s) 148
Fsp4HI GCNGC 1 cut(s) 148
FspBI CTAG 1 cut(s) 135
GluI GCNGC 1 cut(s) 148
GsuI CTGGAG 1 cut(s) 194
HapII CCGG 1 cut(s) 47
Hin1II CATG 2 cut(s) 192, 215
HinfI GANTC 1 cut(s) 70
HpaII CCGG 1 cut(s) 47
Hpy166II GTNNAC 1 cut(s) 123
Hpy188I TCNGA 1 cut(s) 18
Hpy188III TCNNGA 1 cut(s) 173
Hpy8I GTNNAC 1 cut(s) 123
HpyAV CCTTC 3 cut(s) 97, 199, 259
HpyCH4III ACNGT 2 cut(s) 127, 221
HpyCH4IV ACGT 1 cut(s) 143
HpyCH4V TGCA 4 cut(s) 39, 115, 183, 192
HpyF10VI GCNNNNNNNGC 1 cut(s) 189
HpySE526I ACGT 1 cut(s) 143
Hsp92II CATG 2 cut(s) 192, 215
LmnI GCTCC 2 cut(s) 85, 157
LpnPI CCDG 4 cut(s) 52, 60, 88, 158
MaeI CTAG 1 cut(s) 135
MaeII ACGT 1 cut(s) 143
MaeIII GTNAC 1 cut(s) 139
MboII GAAGA 1 cut(s) 175
MluCI AATT 2 cut(s) 234, 245
MnlI CCTC 5 cut(s) 36, 87, 100, 142, 159
Mph1103I ATGCAT 1 cut(s) 194
MseI TTAA 2 cut(s) 57, 271
MspI CCGG 1 cut(s) 47
MvnI CGCG 1 cut(s) 150
MwoI GCNNNNNNNGC 1 cut(s) 189
NlaIII CATG 2 cut(s) 192, 215
NlaIV GGNNCC 1 cut(s) 129
NsiI ATGCAT 1 cut(s) 194
PfeI GAWTC 1 cut(s) 70
PinAI ACCGGT 1 cut(s) 46
PkrI GCNGC 1 cut(s) 149
Ppu21I YACGTR 1 cut(s) 144
PspN4I GGNNCC 1 cut(s) 129
SaqAI TTAA 2 cut(s) 57, 271
SatI GCNGC 1 cut(s) 148
SetI ASST 1 cut(s) 146
SmlI CTYRAG 1 cut(s) 27
SmoI CTYRAG 1 cut(s) 27
Sse9I AATT 2 cut(s) 234, 245
SsiI CCGC 1 cut(s) 148
SspMI CTAG 1 cut(s) 135
TaaI ACNGT 2 cut(s) 127, 221
TaiI ACGT 1 cut(s) 146
TasI AATT 2 cut(s) 234, 245
TauI GCSGC 1 cut(s) 150
TfiI GAWTC 1 cut(s) 70
Tru1I TTAA 2 cut(s) 57, 271
Tru9I TTAA 2 cut(s) 57, 271
XapI RAATTY 1 cut(s) 245
XmiI GTMKAC 1 cut(s) 122
XspI CTAG 1 cut(s) 135
Zsp2I ATGCAT 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.