RchiOBHm_Chr6g0249051

Belongs to the peptidase S10 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000102
Physical Location & Seq
Forward (+)
4905957 .. 4906496
540 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22326

Sequence Viewer

Length: 306 bp
ATGTTAGATTACTTTTTTACATCGTGTGCAAGTATGACCGATTTAAAATATGCGATGTCTATGAACAGATTTCTAGTAGTGGCTGCTTACAGGTTCAACATCACCAGCTTACCCGGCTTTCCCGGTGACCTTCCATTCAGACTGGAAACTGGGTACATCGGAGTTGGAGACTCTGACAACGTGCAACTATTCTACTACTTCATTGAGTCTGAAGGAACTCCGAAGAATGGCCCGCTTATGCTTTGGCTCAGCGGAGGTCCTGGCTGTTCTGATTTTTCTGCCCTCGCATATGAAATTGGTGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S10

Protein Analysis

101

Amino Acids

11.14

Weight (kDa)

4.24

Isoelectric Point (pI)

43.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 38 - 100 2.6e-20 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000102)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33540 AT1G33540 AT1G73270 AT1G73270 AT1G73280 AT1G73280 AT1G73280 AT1G73280 AT1G73290 AT1G73290 AT1G73290 AT1G73300 AT1G73300 AT1G73310 AT1G73310 AT1G73310 AT2G22920 AT2G22920 AT2G22920 AT2G22920 AT2G22960 AT2G22970 AT2G22970 AT2G22970 AT2G22970 AT2G22980 AT2G22980 AT2G22980 AT2G22980 AT2G22980 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G23000 AT2G23000 AT2G23010 AT2G23010 AT3G10450 AT3G10450 AT3G10450 AT3G10450 AT3G12203 AT3G12203 AT3G12203 AT3G12220 AT3G12220 AT3G12220 AT3G12230 AT3G12240 AT5G09640 AT5G36180 AT5G36180 AT5G36180 AT5G36180 AT5G36180
fragaria_vesca FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_2g03550 FvH4_2g03550 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03570 FvH4_2g03570 FvH4_2g03570 FvH4_2g32860 FvH4_2g32860 FvH4_2g32860 FvH4_6g45780
malus_domestica MD05G1102900.v1.1 MD05G1103100.v1.1 MD05G1103400.v1.1 MD05G1103600.v1.1 MD15G1067200.v1.1 MD15G1299100.v1.1 MD15G1299200.v1.1
prunus_persica Prupe.6G218600_v2.0.a1 Prupe.6G218800_v2.0.a1 Prupe.8G129900_v2.0.a1 Prupe.8G130000_v2.0.a1 Prupe.8G135600_v2.0.a1 Prupe.8G135600_v2.0.a1 Prupe.8G147500_v2.0.a1 Prupe.8G147500_v2.0.a1 Prupe.8G147600_v2.0.a1 Prupe.8G147700_v2.0.a1 Prupe.8G147800_v2.0.a1 Prupe.8G147900_v2.0.a1 Prupe.8G147900_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148300_v2.0.a1
pyrus_communis pycom05g10060 pycom08g20430 pycom10g09380 pycom15g06370
rosa_chinensis RchiOBHm_Chr2g0108421 RchiOBHm_Chr2g0155051 RchiOBHm_Chr2g0176791 RchiOBHm_Chr5g0035721 RchiOBHm_Chr5g0035731 RchiOBHm_Chr5g0043261 RchiOBHm_Chr6g0249011 RchiOBHm_Chr6g0249021 RchiOBHm_Chr6g0249041 RchiOBHm_Chr6g0249051 RchiOBHm_Chr6g0249071 RchiOBHm_Chr6g0249091 RchiOBHm_Chr6g0249111 RchiOBHm_Chr6g0249131 RchiOBHm_Chr6g0249151 RchiOBHm_Chr6g0252461 RchiOBHm_Chr6g0252481 RchiOBHm_Chr6g0252491
rosa_laevigata RLG00000001434 RLG00000015094 RLG00000015095 RLG00000015096 RLG00000015099 RLG00000015101 RLG00000015103 RLG00000017668
rosa_multiflora Rmu_co7960301.1_g000001 Rmu_co8316227.1_g000001 Rmu_co8338197.1_g000001 Rmu_co8348961.1_g000001 Rmu_sc0000290.1_g000001 Rmu_sc0000290.1_g000008 Rmu_sc0001762.1_g000019 Rmu_sc0001762.1_g000023 Rmu_sc0002016.1_g000008 Rmu_sc0002016.1_g000013 Rmu_sc0002016.1_g000016 Rmu_sc0002372.1_g000025 Rmu_sc0003692.1_g000002 Rmu_sc0003692.1_g000012 Rmu_sc0003780.1_g000008 Rmu_sc0003829.1_g000040 Rmu_sc0004823.1_g000035 Rmu_sc0004832.1_g000025 Rmu_sc0006782.1_g000011 Rmu_sc0006782.1_g000015 Rmu_sc0007382.1_g000001 Rmu_sc0009208.1_g000009 Rmu_sc0017474.1_g000001 Rmu_sc0026593.1_g000002 Rmu_sc0028609.1_g000001 Rmu_ssc0000007.1_g000002
rosa_roxburghii Rroxscaffold_1G00023310 Rroxscaffold_2G00135160 Rroxscaffold_2G00135410 Rroxscaffold_7G00212680 Rroxscaffold_7G00212690 Rroxscaffold_7G00212710 Rroxscaffold_7G00212730 Rroxscaffold_7G00212740 Rroxscaffold_7G00212770 Rroxscaffold_7G00212780
rosa_rugosa Rorug02G0152900 Rorug02G0153000 Rorug02G0153100 Rorug02G0153200 Rorug02G0153300 Rorug03G0171900 Rorug04G0031100 Rorug04G0031100 Rorug04G0031100 Rorug05G0033600 Rorug05G0033700 Rorug05G0033700 Rorug05G0534900 Rorug05G0534900 Rorug05G0535000 Rorug05G0535100 Rorug05G0535200 Rorug05G0535300 Rorug05G0535400.1 Rorug05G0535500.1 Rorug05G0535600 Rorug05G0535700 Rorug05G0535900 Rorug05G0536000.1 Rorug05G0536100.1 Rorug05G0536200 Rorug05G0536200 Rorug05G0536300 Rorug06G0002300
rosa_samantha Rh1AG086800 Rh1BG137200 Rh2AG201800 Rh2BG214700 Rh2CG205900 Rh2CG650900 Rh2DG209100 Rh2DG683600 Rh2DG701600 Rh4DG048600 Rh5BG257100 Rh5BG296800 Rh5DG266200 Rh5DG306500 Rh6AG052300 Rh6AG052500 Rh6BG009400 Rh6BG045800 Rh6BG046000 Rh6BG046100 Rh6BG046300 Rh6BG046400 Rh6BG046500 Rh6CG044400 Rh6CG044500 Rh6CG044600 Rh6CG044900 Rh6CG045100 Rh6CG045200 Rh6CG178800 Rh6DG039600 Rh6DG039800 Rh6DG040100 Rh6DG040600 Rh6DG040800 Rh6DG040900 Rh7AG465600 Rh7CG509300 Rh7DG476900
rosa_wichuraiana Rw0G003830 Rw1G008040 Rw2G016060 Rw2G016130 Rw2G053970 Rw4G021320 Rw6G004520 Rw6G004560 Rw6G004640 Rw6G004660 Rw6G004670 Rw6G004680 Rw6G004700 Rw6G004720 Rw6G004730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 233, 252
AcuI CTGAAG 1 cut(s) 231
AfaI GTAC 1 cut(s) 155
AfiI CCNNNNNNNGG 1 cut(s) 227
AgsI TTSAA 1 cut(s) 97
AjnI CCWGG 1 cut(s) 259
AluBI AGCT 1 cut(s) 108
AluI AGCT 1 cut(s) 108
Alw26I GTCTC 1 cut(s) 162
AoxI GGCC 1 cut(s) 229
ApeKI GCWGC 1 cut(s) 83
AspS9I GGNCC 2 cut(s) 230, 257
AsuC2I CCSGG 2 cut(s) 114, 123
AsuHPI GGTGA 2 cut(s) 94, 137
AvaII GGWCC 1 cut(s) 257
BbvI GCAGC 1 cut(s) 70
BciT130I CCWGG 1 cut(s) 261
BcnI CCSGG 2 cut(s) 114, 123
BcoDI GTCTC 1 cut(s) 162
BfaI CTAG 1 cut(s) 74
BisI GCNGC 1 cut(s) 84
BlpI GCTNAGC 1 cut(s) 248
BlsI GCNGC 1 cut(s) 85
Bme1390I CCNGG 3 cut(s) 114, 123, 261
Bme18I GGWCC 1 cut(s) 257
BmgT120I GGNCC 2 cut(s) 230, 257
BmrFI CCNGG 3 cut(s) 114, 123, 261
BmrI ACTGGG 1 cut(s) 159
BmuI ACTGGG 1 cut(s) 159
Bpu1102I GCTNAGC 1 cut(s) 248
BpuMI CCSGG 2 cut(s) 114, 123
Bsc4I CCNNNNNNNGG 1 cut(s) 227
Bse1I ACTGG 2 cut(s) 147, 154
BseBI CCWGG 1 cut(s) 261
BseLI CCNNNNNNNGG 1 cut(s) 227
BseMII CTCAG 1 cut(s) 262
BseNI ACTGG 2 cut(s) 147, 154
BseXI GCAGC 1 cut(s) 70
BshFI GGCC 1 cut(s) 231
BsiSI CCGG 2 cut(s) 114, 123
BslI CCNNNNNNNGG 1 cut(s) 227
BsmAI GTCTC 1 cut(s) 162
BsnI GGCC 1 cut(s) 231
Bsp1720I GCTNAGC 1 cut(s) 248
BspACI CCGC 2 cut(s) 233, 252
BspANI GGCC 1 cut(s) 231
BspCNI CTCAG 1 cut(s) 261
BsrI ACTGG 2 cut(s) 147, 154
Bst2UI CCWGG 1 cut(s) 261
BstC8I GCNNGC 1 cut(s) 233
BstDEI CTNAG 1 cut(s) 248
BstEII GGTNACC 1 cut(s) 125
BstMAI GTCTC 1 cut(s) 162
BstMWI GCNNNNNNNGC 1 cut(s) 114
BstNI CCWGG 1 cut(s) 261
BstPI GGTNACC 1 cut(s) 125
BstSCI CCNGG 3 cut(s) 112, 121, 259
BstV1I GCAGC 1 cut(s) 70
BsuRI GGCC 1 cut(s) 231
BtgZI GCGATG 1 cut(s) 68
Cac8I GCNNGC 1 cut(s) 233
Cfr13I GGNCC 2 cut(s) 230, 257
Csp6I GTAC 1 cut(s) 154
CviJI RGCY 6 cut(s) 83, 108, 117, 231, 247, 264
CviKI_1 RGCY 6 cut(s) 83, 108, 117, 231, 247, 264
CviQI GTAC 1 cut(s) 154
DdeI CTNAG 1 cut(s) 248
DraI TTTAAA 1 cut(s) 45
Eco47I GGWCC 1 cut(s) 257
Eco57I CTGAAG 1 cut(s) 231
Eco91I GGTNACC 1 cut(s) 125
EcoO109I RGGNCCY 1 cut(s) 257
EcoO65I GGTNACC 1 cut(s) 125
EcoRII CCWGG 1 cut(s) 259
FaiI YATR 6 cut(s) 35, 51, 62, 239, 289, 291
FauI CCCGC 1 cut(s) 240
FauNDI CATATG 1 cut(s) 289
Fnu4HI GCNGC 1 cut(s) 84
Fsp4HI GCNGC 1 cut(s) 84
FspBI CTAG 1 cut(s) 74
GluI GCNGC 1 cut(s) 84
HaeIII GGCC 1 cut(s) 231
HapII CCGG 2 cut(s) 114, 123
HinfI GANTC 2 cut(s) 170, 206
HpaII CCGG 2 cut(s) 114, 123
HphI GGTGA 2 cut(s) 94, 137
Hpy188I TCNGA 6 cut(s) 140, 161, 175, 211, 222, 271
HpyAV CCTTC 2 cut(s) 140, 206
HpyCH4IV ACGT 1 cut(s) 180
HpyCH4V TGCA 2 cut(s) 29, 184
HpyF10VI GCNNNNNNNGC 1 cut(s) 114
HpyF3I CTNAG 1 cut(s) 248
HpySE526I ACGT 1 cut(s) 180
LpnPI CCDG 8 cut(s) 76, 118, 127, 128, 135, 136, 246, 273
Lsp1109I GCAGC 1 cut(s) 70
MaeI CTAG 1 cut(s) 74
MaeII ACGT 1 cut(s) 180
MaeIII GTNAC 1 cut(s) 125
MboII GAAGA 1 cut(s) 235
MluCI AATT 1 cut(s) 294
MlyI GAGTC 2 cut(s) 164, 215
MmeI TCCRAC 1 cut(s) 145
MnlI CCTC 2 cut(s) 248, 293
MseI TTAA 1 cut(s) 44
MspA1I CMGCKG 1 cut(s) 252
MspI CCGG 2 cut(s) 114, 123
MspR9I CCNGG 3 cut(s) 114, 123, 261
MvaI CCWGG 1 cut(s) 261
MwoI GCNNNNNNNGC 1 cut(s) 114
NciI CCSGG 2 cut(s) 114, 123
NdeI CATATG 1 cut(s) 289
NmuCI GTSAC 1 cut(s) 125
PkrI GCNGC 1 cut(s) 85
PleI GAGTC 2 cut(s) 164, 214
PpsI GAGTC 2 cut(s) 164, 214
PpuMI RGGWCCY 1 cut(s) 257
Psp5II RGGWCCY 1 cut(s) 257
Psp6I CCWGG 1 cut(s) 259
PspEI GGTNACC 1 cut(s) 125
PspGI CCWGG 1 cut(s) 259
PspPI GGNCC 2 cut(s) 230, 257
PspPPI RGGWCCY 1 cut(s) 257
RsaI GTAC 1 cut(s) 155
RsaNI GTAC 1 cut(s) 154
SaqAI TTAA 1 cut(s) 44
SatI GCNGC 1 cut(s) 84
Sau96I GGNCC 2 cut(s) 230, 257
SchI GAGTC 2 cut(s) 164, 215
ScrFI CCNGG 3 cut(s) 114, 123, 261
SetI ASST 5 cut(s) 95, 110, 132, 183, 259
SinI GGWCC 1 cut(s) 257
Sse9I AATT 1 cut(s) 294
SsiI CCGC 2 cut(s) 233, 252
SspMI CTAG 1 cut(s) 74
StyD4I CCNGG 3 cut(s) 112, 121, 259
TaiI ACGT 1 cut(s) 183
TaqII GACCGA 1 cut(s) 53
TasI AATT 1 cut(s) 294
Tru1I TTAA 1 cut(s) 44
Tru9I TTAA 1 cut(s) 44
TseFI GTSAC 1 cut(s) 125
TseI GCWGC 1 cut(s) 83
Tsp45I GTSAC 1 cut(s) 125
TspDTI ATGAA 3 cut(s) 77, 190, 306
VpaK11BI GGWCC 1 cut(s) 257
XspI CTAG 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.