Rh1AG086800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000102
Physical Location & Seq
Forward (+)
14840041 .. 14845619
5579 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG086800.1

Sequence Viewer

Length: 162 bp
ATGGACGCCGATTCCAGCTTGTTCAACGACTCGGGCCCAGAAAACTCCGCCAGCGACGGGACCGTAACCTTCTCCGCCGATTCCACCTCCGGCCCTGCATTTTCCAGTCACTCAGCTCCGGCGATTGGAAAAGATGCTCTTTGGTCTACCGGCGGTAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

53

Amino Acids

5.2

Weight (kDa)

4.05

Isoelectric Point (pI)

41.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000102)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33540 AT1G33540 AT1G73270 AT1G73270 AT1G73280 AT1G73280 AT1G73280 AT1G73280 AT1G73290 AT1G73290 AT1G73290 AT1G73300 AT1G73300 AT1G73310 AT1G73310 AT1G73310 AT2G22920 AT2G22920 AT2G22920 AT2G22920 AT2G22960 AT2G22970 AT2G22970 AT2G22970 AT2G22970 AT2G22980 AT2G22980 AT2G22980 AT2G22980 AT2G22980 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G23000 AT2G23000 AT2G23010 AT2G23010 AT3G10450 AT3G10450 AT3G10450 AT3G10450 AT3G12203 AT3G12203 AT3G12203 AT3G12220 AT3G12220 AT3G12220 AT3G12230 AT3G12240 AT5G09640 AT5G36180 AT5G36180 AT5G36180 AT5G36180 AT5G36180
fragaria_vesca FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_2g03550 FvH4_2g03550 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03570 FvH4_2g03570 FvH4_2g03570 FvH4_2g32860 FvH4_2g32860 FvH4_2g32860 FvH4_6g45780
malus_domestica MD05G1102900.v1.1 MD05G1103100.v1.1 MD05G1103400.v1.1 MD05G1103600.v1.1 MD15G1067200.v1.1 MD15G1299100.v1.1 MD15G1299200.v1.1
prunus_persica Prupe.6G218600_v2.0.a1 Prupe.6G218800_v2.0.a1 Prupe.8G129900_v2.0.a1 Prupe.8G130000_v2.0.a1 Prupe.8G135600_v2.0.a1 Prupe.8G135600_v2.0.a1 Prupe.8G147500_v2.0.a1 Prupe.8G147500_v2.0.a1 Prupe.8G147600_v2.0.a1 Prupe.8G147700_v2.0.a1 Prupe.8G147800_v2.0.a1 Prupe.8G147900_v2.0.a1 Prupe.8G147900_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148300_v2.0.a1
pyrus_communis pycom05g10060 pycom08g20430 pycom10g09380 pycom15g06370
rosa_chinensis RchiOBHm_Chr2g0108421 RchiOBHm_Chr2g0155051 RchiOBHm_Chr2g0176791 RchiOBHm_Chr5g0035721 RchiOBHm_Chr5g0035731 RchiOBHm_Chr5g0043261 RchiOBHm_Chr6g0249011 RchiOBHm_Chr6g0249021 RchiOBHm_Chr6g0249041 RchiOBHm_Chr6g0249051 RchiOBHm_Chr6g0249071 RchiOBHm_Chr6g0249091 RchiOBHm_Chr6g0249111 RchiOBHm_Chr6g0249131 RchiOBHm_Chr6g0249151 RchiOBHm_Chr6g0252461 RchiOBHm_Chr6g0252481 RchiOBHm_Chr6g0252491
rosa_laevigata RLG00000001434 RLG00000015094 RLG00000015095 RLG00000015096 RLG00000015099 RLG00000015101 RLG00000015103 RLG00000017668
rosa_multiflora Rmu_co7960301.1_g000001 Rmu_co8316227.1_g000001 Rmu_co8338197.1_g000001 Rmu_co8348961.1_g000001 Rmu_sc0000290.1_g000001 Rmu_sc0000290.1_g000008 Rmu_sc0001762.1_g000019 Rmu_sc0001762.1_g000023 Rmu_sc0002016.1_g000008 Rmu_sc0002016.1_g000013 Rmu_sc0002016.1_g000016 Rmu_sc0002372.1_g000025 Rmu_sc0003692.1_g000002 Rmu_sc0003692.1_g000012 Rmu_sc0003780.1_g000008 Rmu_sc0003829.1_g000040 Rmu_sc0004823.1_g000035 Rmu_sc0004832.1_g000025 Rmu_sc0006782.1_g000011 Rmu_sc0006782.1_g000015 Rmu_sc0007382.1_g000001 Rmu_sc0009208.1_g000009 Rmu_sc0017474.1_g000001 Rmu_sc0026593.1_g000002 Rmu_sc0028609.1_g000001 Rmu_ssc0000007.1_g000002
rosa_roxburghii Rroxscaffold_1G00023310 Rroxscaffold_2G00135160 Rroxscaffold_2G00135410 Rroxscaffold_7G00212680 Rroxscaffold_7G00212690 Rroxscaffold_7G00212710 Rroxscaffold_7G00212730 Rroxscaffold_7G00212740 Rroxscaffold_7G00212770 Rroxscaffold_7G00212780
rosa_rugosa Rorug02G0152900 Rorug02G0153000 Rorug02G0153100 Rorug02G0153200 Rorug02G0153300 Rorug03G0171900 Rorug04G0031100 Rorug04G0031100 Rorug04G0031100 Rorug05G0033600 Rorug05G0033700 Rorug05G0033700 Rorug05G0534900 Rorug05G0534900 Rorug05G0535000 Rorug05G0535100 Rorug05G0535200 Rorug05G0535300 Rorug05G0535400.1 Rorug05G0535500.1 Rorug05G0535600 Rorug05G0535700 Rorug05G0535900 Rorug05G0536000.1 Rorug05G0536100.1 Rorug05G0536200 Rorug05G0536200 Rorug05G0536300 Rorug06G0002300
rosa_samantha Rh1AG086800 Rh1BG137200 Rh2AG201800 Rh2BG214700 Rh2CG205900 Rh2CG650900 Rh2DG209100 Rh2DG683600 Rh2DG701600 Rh4DG048600 Rh5BG257100 Rh5BG296800 Rh5DG266200 Rh5DG306500 Rh6AG052300 Rh6AG052500 Rh6BG009400 Rh6BG045800 Rh6BG046000 Rh6BG046100 Rh6BG046300 Rh6BG046400 Rh6BG046500 Rh6CG044400 Rh6CG044500 Rh6CG044600 Rh6CG044900 Rh6CG045100 Rh6CG045200 Rh6CG178800 Rh6DG039600 Rh6DG039800 Rh6DG040100 Rh6DG040600 Rh6DG040800 Rh6DG040900 Rh7AG465600 Rh7CG509300 Rh7DG476900
rosa_wichuraiana Rw0G003830 Rw1G008040 Rw2G016060 Rw2G016130 Rw2G053970 Rw4G021320 Rw6G004520 Rw6G004560 Rw6G004640 Rw6G004660 Rw6G004670 Rw6G004680 Rw6G004700 Rw6G004720 Rw6G004730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 146
AciI CCGC 3 cut(s) 48, 75, 153
AcyI GRCGYC 1 cut(s) 6
AfiI CCNNNNNNNGG 2 cut(s) 57, 125
AgsI TTSAA 1 cut(s) 25
AluBI AGCT 2 cut(s) 18, 116
AluI AGCT 2 cut(s) 18, 116
Ama87I CYCGRG 1 cut(s) 31
AoxI GGCC 2 cut(s) 34, 91
ApaI GGGCCC 1 cut(s) 38
AspS9I GGNCC 4 cut(s) 34, 35, 60, 92
AvaI CYCGRG 1 cut(s) 31
AvaII GGWCC 1 cut(s) 60
BaeGI GKGCMC 1 cut(s) 38
BanII GRGCYC 1 cut(s) 38
Bme18I GGWCC 1 cut(s) 60
BmeT110I CYCGRG 1 cut(s) 31
BmgT120I GGNCC 4 cut(s) 34, 35, 60, 92
BmiI GGNNCC 2 cut(s) 36, 61
BmsI GCATC 1 cut(s) 124
BsaHI GRCGYC 1 cut(s) 6
Bsc4I CCNNNNNNNGG 2 cut(s) 57, 125
Bse118I RCCGGY 1 cut(s) 149
Bse1I ACTGG 1 cut(s) 105
BseLI CCNNNNNNNGG 2 cut(s) 57, 125
BseMII CTCAG 1 cut(s) 126
BseNI ACTGG 1 cut(s) 105
BseSI GKGCMC 1 cut(s) 38
BshFI GGCC 2 cut(s) 36, 93
BsiHKCI CYCGRG 1 cut(s) 31
BsiSI CCGG 3 cut(s) 90, 119, 150
BslFI GGGAC 1 cut(s) 73
BslI CCNNNNNNNGG 2 cut(s) 57, 125
BsmFI GGGAC 1 cut(s) 73
BsnI GGCC 2 cut(s) 36, 93
BsoBI CYCGRG 1 cut(s) 31
Bsp120I GGGCCC 1 cut(s) 34
Bsp1286I GDGCHC 1 cut(s) 38
BspACI CCGC 3 cut(s) 48, 75, 153
BspANI GGCC 2 cut(s) 36, 93
BspCNI CTCAG 1 cut(s) 125
BspLI GGNNCC 2 cut(s) 36, 61
BsrFI RCCGGY 1 cut(s) 149
BsrI ACTGG 1 cut(s) 105
BssAI RCCGGY 1 cut(s) 149
BssNI GRCGYC 1 cut(s) 6
Bst4CI ACNGT 1 cut(s) 64
BstACI GRCGYC 1 cut(s) 6
BstC8I GCNNGC 1 cut(s) 52
BstDEI CTNAG 1 cut(s) 112
BstSLI GKGCMC 1 cut(s) 38
BsuRI GGCC 2 cut(s) 36, 93
Cac8I GCNNGC 1 cut(s) 52
Cfr10I RCCGGY 1 cut(s) 149
Cfr13I GGNCC 4 cut(s) 34, 35, 60, 92
CseI GACGC 1 cut(s) 14
CviJI RGCY 4 cut(s) 18, 36, 93, 116
CviKI_1 RGCY 4 cut(s) 18, 36, 93, 116
DdeI CTNAG 1 cut(s) 112
EciI GGCGGA 2 cut(s) 37, 64
Eco24I GRGCYC 1 cut(s) 38
Eco47I GGWCC 1 cut(s) 60
Eco88I CYCGRG 1 cut(s) 31
EcoT38I GRGCYC 1 cut(s) 38
FalI AAGNNNNNCTT 2 cut(s) 123, 155
FaqI GGGAC 1 cut(s) 73
FblI GTMKAC 1 cut(s) 146
FriOI GRGCYC 1 cut(s) 38
HaeIII GGCC 2 cut(s) 36, 93
HapII CCGG 3 cut(s) 90, 119, 150
HgaI GACGC 1 cut(s) 14
Hin1I GRCGYC 1 cut(s) 6
HinfI GANTC 3 cut(s) 11, 29, 80
HpaII CCGG 3 cut(s) 90, 119, 150
Hpy166II GTNNAC 1 cut(s) 147
Hpy8I GTNNAC 1 cut(s) 147
Hpy99I CGWCG 1 cut(s) 59
HpyAV CCTTC 1 cut(s) 79
HpyCH4III ACNGT 1 cut(s) 64
HpyCH4V TGCA 1 cut(s) 98
HpyF3I CTNAG 1 cut(s) 112
Hsp92I GRCGYC 1 cut(s) 6
LmnI GCTCC 1 cut(s) 121
LpnPI CCDG 7 cut(s) 28, 51, 64, 103, 108, 118, 132
LweI GCATC 1 cut(s) 124
MaeIII GTNAC 2 cut(s) 64, 107
MhlI GDGCHC 1 cut(s) 38
MlyI GAGTC 1 cut(s) 23
MnlI CCTC 1 cut(s) 97
MspI CCGG 3 cut(s) 90, 119, 150
NlaIV GGNNCC 2 cut(s) 36, 61
NmuCI GTSAC 1 cut(s) 107
PfeI GAWTC 2 cut(s) 11, 80
PleI GAGTC 1 cut(s) 23
PpsI GAGTC 1 cut(s) 23
PspN4I GGNNCC 2 cut(s) 36, 61
PspOMI GGGCCC 1 cut(s) 34
PspPI GGNCC 4 cut(s) 34, 35, 60, 92
Sau96I GGNCC 4 cut(s) 34, 35, 60, 92
SchI GAGTC 1 cut(s) 23
SduI GDGCHC 1 cut(s) 38
SetI ASST 4 cut(s) 20, 71, 89, 118
SfaNI GCATC 1 cut(s) 124
SinI GGWCC 1 cut(s) 60
SsiI CCGC 3 cut(s) 48, 75, 153
TaaI ACNGT 1 cut(s) 64
TfiI GAWTC 2 cut(s) 11, 80
TseFI GTSAC 1 cut(s) 107
Tsp45I GTSAC 1 cut(s) 107
VpaK11BI GGWCC 1 cut(s) 60
XmiI GTMKAC 1 cut(s) 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.