Rw1G008040
TCP Family

T-complex protein 11

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000102
Physical Location & Seq
Forward (+)
17265735 .. 17275260
9526 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G008040.1

Sequence Viewer

Length: 558 bp
ATGTCGTTAGCTGCAGAGAATGTTCAAGTTGAAGAGGTGATGACTTCACTTGATGCAATGAAGGAGCCTGAGGAATATACTGTTGAGCAAATCCAAACCAAGCTTCGACTCGCCGATCTTCGCCGCCAGGAACACTATGAAAAGTTTTCAAACAAGGCCCGGACAAAGCCCAGAAGCCCCTCTCGATCTTCTTCTCAAGAGGAAGACCTTGGCGAGCTACTGGATGCCAAGCTCCAGGCTGCTGAGAAGAAAAGGATGTTAGAATCTAAGAACTCATTCAAAGTATTATCTGATTGGTTATGGGCTGCTAAAACTAATTGCAGTGGGGACTATGACAATGTGGAACTTAACAATACACTTTGTGTTACTGCTCTTCAAAAAATTAAAGATTGTCTTCTAGAAATAAATCTTGCACAAATTTTGGAACCCCAATGTGCTTTTGCATCTGATCAATGGTATAAACACCTCATTAAACCTAATATTCTTAGGTGTGATGTTGATCTGATGAACGAGACTGATCTTCTTTACGATGGCTTTACCGGCCTCGGTGTTGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Tcp11

Protein Analysis

185

Amino Acids

21.18

Weight (kDa)

4.89

Isoelectric Point (pI)

55.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000102)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33540 AT1G33540 AT1G73270 AT1G73270 AT1G73280 AT1G73280 AT1G73280 AT1G73280 AT1G73290 AT1G73290 AT1G73290 AT1G73300 AT1G73300 AT1G73310 AT1G73310 AT1G73310 AT2G22920 AT2G22920 AT2G22920 AT2G22920 AT2G22960 AT2G22970 AT2G22970 AT2G22970 AT2G22970 AT2G22980 AT2G22980 AT2G22980 AT2G22980 AT2G22980 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G23000 AT2G23000 AT2G23010 AT2G23010 AT3G10450 AT3G10450 AT3G10450 AT3G10450 AT3G12203 AT3G12203 AT3G12203 AT3G12220 AT3G12220 AT3G12220 AT3G12230 AT3G12240 AT5G09640 AT5G36180 AT5G36180 AT5G36180 AT5G36180 AT5G36180
fragaria_vesca FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_2g03550 FvH4_2g03550 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03570 FvH4_2g03570 FvH4_2g03570 FvH4_2g32860 FvH4_2g32860 FvH4_2g32860 FvH4_6g45780
malus_domestica MD05G1102900.v1.1 MD05G1103100.v1.1 MD05G1103400.v1.1 MD05G1103600.v1.1 MD15G1067200.v1.1 MD15G1299100.v1.1 MD15G1299200.v1.1
prunus_persica Prupe.6G218600_v2.0.a1 Prupe.6G218800_v2.0.a1 Prupe.8G129900_v2.0.a1 Prupe.8G130000_v2.0.a1 Prupe.8G135600_v2.0.a1 Prupe.8G135600_v2.0.a1 Prupe.8G147500_v2.0.a1 Prupe.8G147500_v2.0.a1 Prupe.8G147600_v2.0.a1 Prupe.8G147700_v2.0.a1 Prupe.8G147800_v2.0.a1 Prupe.8G147900_v2.0.a1 Prupe.8G147900_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148300_v2.0.a1
pyrus_communis pycom05g10060 pycom08g20430 pycom10g09380 pycom15g06370
rosa_chinensis RchiOBHm_Chr2g0108421 RchiOBHm_Chr2g0155051 RchiOBHm_Chr2g0176791 RchiOBHm_Chr5g0035721 RchiOBHm_Chr5g0035731 RchiOBHm_Chr5g0043261 RchiOBHm_Chr6g0249011 RchiOBHm_Chr6g0249021 RchiOBHm_Chr6g0249041 RchiOBHm_Chr6g0249051 RchiOBHm_Chr6g0249071 RchiOBHm_Chr6g0249091 RchiOBHm_Chr6g0249111 RchiOBHm_Chr6g0249131 RchiOBHm_Chr6g0249151 RchiOBHm_Chr6g0252461 RchiOBHm_Chr6g0252481 RchiOBHm_Chr6g0252491
rosa_laevigata RLG00000001434 RLG00000015094 RLG00000015095 RLG00000015096 RLG00000015099 RLG00000015101 RLG00000015103 RLG00000017668
rosa_multiflora Rmu_co7960301.1_g000001 Rmu_co8316227.1_g000001 Rmu_co8338197.1_g000001 Rmu_co8348961.1_g000001 Rmu_sc0000290.1_g000001 Rmu_sc0000290.1_g000008 Rmu_sc0001762.1_g000019 Rmu_sc0001762.1_g000023 Rmu_sc0002016.1_g000008 Rmu_sc0002016.1_g000013 Rmu_sc0002016.1_g000016 Rmu_sc0002372.1_g000025 Rmu_sc0003692.1_g000002 Rmu_sc0003692.1_g000012 Rmu_sc0003780.1_g000008 Rmu_sc0003829.1_g000040 Rmu_sc0004823.1_g000035 Rmu_sc0004832.1_g000025 Rmu_sc0006782.1_g000011 Rmu_sc0006782.1_g000015 Rmu_sc0007382.1_g000001 Rmu_sc0009208.1_g000009 Rmu_sc0017474.1_g000001 Rmu_sc0026593.1_g000002 Rmu_sc0028609.1_g000001 Rmu_ssc0000007.1_g000002
rosa_roxburghii Rroxscaffold_1G00023310 Rroxscaffold_2G00135160 Rroxscaffold_2G00135410 Rroxscaffold_7G00212680 Rroxscaffold_7G00212690 Rroxscaffold_7G00212710 Rroxscaffold_7G00212730 Rroxscaffold_7G00212740 Rroxscaffold_7G00212770 Rroxscaffold_7G00212780
rosa_rugosa Rorug02G0152900 Rorug02G0153000 Rorug02G0153100 Rorug02G0153200 Rorug02G0153300 Rorug03G0171900 Rorug04G0031100 Rorug04G0031100 Rorug04G0031100 Rorug05G0033600 Rorug05G0033700 Rorug05G0033700 Rorug05G0534900 Rorug05G0534900 Rorug05G0535000 Rorug05G0535100 Rorug05G0535200 Rorug05G0535300 Rorug05G0535400.1 Rorug05G0535500.1 Rorug05G0535600 Rorug05G0535700 Rorug05G0535900 Rorug05G0536000.1 Rorug05G0536100.1 Rorug05G0536200 Rorug05G0536200 Rorug05G0536300 Rorug06G0002300
rosa_samantha Rh1AG086800 Rh1BG137200 Rh2AG201800 Rh2BG214700 Rh2CG205900 Rh2CG650900 Rh2DG209100 Rh2DG683600 Rh2DG701600 Rh4DG048600 Rh5BG257100 Rh5BG296800 Rh5DG266200 Rh5DG306500 Rh6AG052300 Rh6AG052500 Rh6BG009400 Rh6BG045800 Rh6BG046000 Rh6BG046100 Rh6BG046300 Rh6BG046400 Rh6BG046500 Rh6CG044400 Rh6CG044500 Rh6CG044600 Rh6CG044900 Rh6CG045100 Rh6CG045200 Rh6CG178800 Rh6DG039600 Rh6DG039800 Rh6DG040100 Rh6DG040600 Rh6DG040800 Rh6DG040900 Rh7AG465600 Rh7CG509300 Rh7DG476900
rosa_wichuraiana Rw0G003830 Rw1G008040 Rw2G016060 Rw2G016130 Rw2G053970 Rw4G021320 Rw6G004520 Rw6G004560 Rw6G004640 Rw6G004660 Rw6G004670 Rw6G004680 Rw6G004700 Rw6G004720 Rw6G004730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 124
AcsI RAATTY 1 cut(s) 417
AdeI CACNNNGTG 1 cut(s) 362
AgsI TTSAA 5 cut(s) 26, 32, 150, 280, 377
AjnI CCWGG 2 cut(s) 126, 234
AjuI GAANNNNNNNTTGG 2 cut(s) 87, 119
AluBI AGCT 4 cut(s) 11, 103, 217, 232
AluI AGCT 4 cut(s) 11, 103, 217, 232
Alw26I GTCTC 1 cut(s) 506
AoxI GGCC 2 cut(s) 156, 541
ApeKI GCWGC 3 cut(s) 11, 239, 305
ApoI RAATTY 1 cut(s) 417
Asp700I GAANNNNTTC 1 cut(s) 275
AspS9I GGNCC 1 cut(s) 157
AsuC2I CCSGG 1 cut(s) 160
AsuHPI GGTGA 1 cut(s) 49
AxyI CCTNAGG 1 cut(s) 69
BbsI GAAGAC 2 cut(s) 210, 386
BbvI GCAGC 2 cut(s) 226, 292
BccI CCATC 1 cut(s) 524
BciT130I CCWGG 2 cut(s) 128, 236
BclI TGATCA 1 cut(s) 448
BcnI CCSGG 1 cut(s) 160
BcoDI GTCTC 1 cut(s) 506
BfaI CTAG 1 cut(s) 398
BfmI CTRYAG 1 cut(s) 12
BisI GCNGC 4 cut(s) 12, 124, 240, 306
BlsI GCNGC 4 cut(s) 13, 125, 241, 307
Bme1390I CCNGG 3 cut(s) 128, 160, 236
BmgT120I GGNCC 1 cut(s) 157
BmiI GGNNCC 2 cut(s) 66, 426
BmrFI CCNGG 3 cut(s) 128, 160, 236
BmsI GCATC 3 cut(s) 43, 214, 452
BpiI GAAGAC 2 cut(s) 210, 386
BpmI CTGGAG 1 cut(s) 218
BpuEI CTTGAG 1 cut(s) 180
BpuMI CCSGG 1 cut(s) 160
BsaBI GATNNNNATC 1 cut(s) 498
BsaJI CCNNGG 2 cut(s) 208, 544
Bse118I RCCGGY 1 cut(s) 539
Bse1I ACTGG 1 cut(s) 225
Bse21I CCTNAGG 1 cut(s) 69
Bse3DI GCAATG 1 cut(s) 63
Bse8I GATNNNNATC 1 cut(s) 498
BseBI CCWGG 2 cut(s) 128, 236
BseDI CCNNGG 2 cut(s) 208, 544
BseGI GGATG 2 cut(s) 229, 261
BseJI GATNNNNATC 1 cut(s) 498
BseMI GCAATG 1 cut(s) 63
BseMII CTCAG 2 cut(s) 60, 234
BseNI ACTGG 1 cut(s) 225
BseXI GCAGC 2 cut(s) 226, 292
BshFI GGCC 2 cut(s) 158, 543
BsiSI CCGG 2 cut(s) 160, 540
BslFI GGGAC 1 cut(s) 341
BsmAI GTCTC 1 cut(s) 506
BsmFI GGGAC 1 cut(s) 341
BsnI GGCC 2 cut(s) 158, 543
Bsp143I GATC 5 cut(s) 115, 185, 448, 499, 517
BspACI CCGC 1 cut(s) 124
BspANI GGCC 2 cut(s) 158, 543
BspCNI CTCAG 2 cut(s) 61, 235
BspLI GGNNCC 2 cut(s) 66, 426
BspMAI CTGCAG 1 cut(s) 16
BspQI GCTCTTC 1 cut(s) 378
BsrDI GCAATG 1 cut(s) 63
BsrFI RCCGGY 1 cut(s) 539
BsrI ACTGG 1 cut(s) 225
BssAI RCCGGY 1 cut(s) 539
BssECI CCNNGG 2 cut(s) 208, 544
BssMI GATC 5 cut(s) 115, 185, 448, 499, 517
BssT1I CCWWGG 1 cut(s) 208
Bst2UI CCWGG 2 cut(s) 128, 236
Bst4CI ACNGT 1 cut(s) 82
Bst6I CTCTTC 2 cut(s) 27, 378
BstC8I GCNNGC 1 cut(s) 215
BstDEI CTNAG 4 cut(s) 69, 243, 267, 485
BstF5I GGATG 2 cut(s) 229, 261
BstKTI GATC 5 cut(s) 118, 188, 451, 502, 520
BstMAI GTCTC 1 cut(s) 506
BstMBI GATC 5 cut(s) 115, 185, 448, 499, 517
BstMWI GCNNNNNNNGC 1 cut(s) 540
BstNI CCWGG 2 cut(s) 128, 236
BstSCI CCNGG 3 cut(s) 126, 158, 234
BstSFI CTRYAG 1 cut(s) 12
BstV1I GCAGC 2 cut(s) 226, 292
BstV2I GAAGAC 2 cut(s) 210, 386
Bsu36I CCTNAGG 1 cut(s) 69
BsuRI GGCC 2 cut(s) 158, 543
BtsCI GGATG 2 cut(s) 229, 261
BtsI GCAGTG 1 cut(s) 328
BtsIMutI CAGTG 1 cut(s) 328
Cac8I GCNNGC 1 cut(s) 215
Cfr10I RCCGGY 1 cut(s) 539
Cfr13I GGNCC 1 cut(s) 157
DdeI CTNAG 4 cut(s) 69, 243, 267, 485
DpnI GATC 5 cut(s) 117, 187, 450, 501, 519
DpnII GATC 5 cut(s) 115, 185, 448, 499, 517
DraIII CACNNNGTG 1 cut(s) 362
Eam1104I CTCTTC 2 cut(s) 27, 378
EarI CTCTTC 2 cut(s) 27, 378
Eco130I CCWWGG 1 cut(s) 208
Eco81I CCTNAGG 1 cut(s) 69
EcoRII CCWGG 2 cut(s) 126, 234
EcoT14I CCWWGG 1 cut(s) 208
ErhI CCWWGG 1 cut(s) 208
FaiI YATR 5 cut(s) 78, 138, 301, 333, 459
FalI AAGNNNNNCTT 2 cut(s) 378, 410
FaqI GGGAC 1 cut(s) 341
FbaI TGATCA 1 cut(s) 448
Fnu4HI GCNGC 4 cut(s) 12, 124, 240, 306
FokI GGATG 2 cut(s) 236, 268
Fsp4HI GCNGC 4 cut(s) 12, 124, 240, 306
FspBI CTAG 1 cut(s) 398
GluI GCNGC 4 cut(s) 12, 124, 240, 306
GsuI CTGGAG 1 cut(s) 218
HaeIII GGCC 2 cut(s) 158, 543
HapII CCGG 2 cut(s) 160, 540
HindIII AAGCTT 1 cut(s) 101
HinfI GANTC 2 cut(s) 108, 263
HpaII CCGG 2 cut(s) 160, 540
HphI GGTGA 1 cut(s) 49
Hpy188I TCNGA 3 cut(s) 292, 448, 504
Hpy188III TCNNGA 3 cut(s) 183, 197, 398
HpyAV CCTTC 1 cut(s) 55
HpyCH4III ACNGT 1 cut(s) 82
HpyCH4V TGCA 5 cut(s) 14, 56, 321, 413, 443
HpyF10VI GCNNNNNNNGC 1 cut(s) 540
HpyF3I CTNAG 4 cut(s) 69, 243, 267, 485
Ksp22I TGATCA 1 cut(s) 448
Kzo9I GATC 5 cut(s) 115, 185, 448, 499, 517
LguI GCTCTTC 1 cut(s) 378
LmnI GCTCC 2 cut(s) 64, 237
LpnPI CCDG 9 cut(s) 81, 113, 140, 173, 184, 206, 221, 248, 553
Lsp1109I GCAGC 2 cut(s) 226, 292
LweI GCATC 3 cut(s) 43, 214, 452
MaeI CTAG 1 cut(s) 398
MaeIII GTNAC 1 cut(s) 364
MalI GATC 5 cut(s) 117, 187, 450, 501, 519
MboI GATC 5 cut(s) 115, 185, 448, 499, 517
MboII GAAGA 9 cut(s) 44, 110, 180, 183, 215, 259, 365, 386, 512
MluCI AATT 3 cut(s) 316, 381, 417
MlyI GAGTC 1 cut(s) 102
MnlI CCTC 6 cut(s) 28, 64, 190, 193, 476, 554
MroXI GAANNNNTTC 1 cut(s) 275
MseI TTAA 3 cut(s) 348, 384, 471
MspI CCGG 2 cut(s) 160, 540
MspR9I CCNGG 3 cut(s) 128, 160, 236
MvaI CCWGG 2 cut(s) 128, 236
MwoI GCNNNNNNNGC 1 cut(s) 540
NciI CCSGG 1 cut(s) 160
NdeII GATC 5 cut(s) 115, 185, 448, 499, 517
NlaIV GGNNCC 2 cut(s) 66, 426
PciSI GCTCTTC 1 cut(s) 378
PdmI GAANNNNTTC 1 cut(s) 275
PfeI GAWTC 1 cut(s) 263
PkrI GCNGC 4 cut(s) 13, 125, 241, 307
PleI GAGTC 1 cut(s) 102
PpsI GAGTC 1 cut(s) 102
Psp6I CCWGG 2 cut(s) 126, 234
PspGI CCWGG 2 cut(s) 126, 234
PspN4I GGNNCC 2 cut(s) 66, 426
PspPI GGNCC 1 cut(s) 157
PstI CTGCAG 1 cut(s) 16
SapI GCTCTTC 1 cut(s) 378
SaqAI TTAA 3 cut(s) 348, 384, 471
SatI GCNGC 4 cut(s) 12, 124, 240, 306
Sau3AI GATC 5 cut(s) 115, 185, 448, 499, 517
Sau96I GGNCC 1 cut(s) 157
SchI GAGTC 1 cut(s) 102
ScrFI CCNGG 3 cut(s) 128, 160, 236
SetI ASST 9 cut(s) 13, 39, 105, 210, 219, 234, 468, 478, 491
SfaNI GCATC 3 cut(s) 43, 214, 452
SfcI CTRYAG 1 cut(s) 12
SmlI CTYRAG 1 cut(s) 195
SmoI CTYRAG 1 cut(s) 195
Sse9I AATT 3 cut(s) 316, 381, 417
SsiI CCGC 1 cut(s) 124
SspI AATATT 1 cut(s) 481
SspMI CTAG 1 cut(s) 398
StyD4I CCNGG 3 cut(s) 126, 158, 234
StyI CCWWGG 1 cut(s) 208
TaaI ACNGT 1 cut(s) 82
TaqI TCGA 2 cut(s) 106, 184
TasI AATT 3 cut(s) 316, 381, 417
TauI GCSGC 1 cut(s) 126
TfiI GAWTC 1 cut(s) 263
Tru1I TTAA 3 cut(s) 348, 384, 471
Tru9I TTAA 3 cut(s) 348, 384, 471
TscAI CASTG 1 cut(s) 328
TseI GCWGC 3 cut(s) 11, 239, 305
TspDTI ATGAA 3 cut(s) 74, 153, 521
TspRI CASTG 1 cut(s) 328
XapI RAATTY 1 cut(s) 417
XbaI TCTAGA 1 cut(s) 397
XmnI GAANNNNTTC 1 cut(s) 275
XspI CTAG 1 cut(s) 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.