Rmu_co8338197.1_g000001

Belongs to the peptidase S10 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8338197.1
OG0000102
Physical Location & Seq
Reverse (-)
164 .. 998
835 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8338197.1_g000001.1.cds

Sequence Viewer

Length: 385 bp
caagcagggaagcatcaaggaatgggtgagatgtaatgacagcttaactagttcatatgtacaagatgtttcttctactgttggttatcaccaaaacctcacaacaaaaggctatagagttctgatttatagtggtgatcatgacatgagtattccatatgtgggcactactacctggatagaatctctgaacttgactctggacagtcaatggaatccttggttcgttaatgcacaaattgcaggatacaaagtgaagtatacattgggaaaatatgagttgacatacgcaaccgtaaagggagccggtcacacagctccagagttcaatcctaaagaatgttttgctatgatcagtagatggttcgcagcctaccctctgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S10

Protein Analysis

127

Amino Acids

14.42

Weight (kDa)

7.93

Isoelectric Point (pI)

30.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000102)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33540 AT1G33540 AT1G73270 AT1G73270 AT1G73280 AT1G73280 AT1G73280 AT1G73280 AT1G73290 AT1G73290 AT1G73290 AT1G73300 AT1G73300 AT1G73310 AT1G73310 AT1G73310 AT2G22920 AT2G22920 AT2G22920 AT2G22920 AT2G22960 AT2G22970 AT2G22970 AT2G22970 AT2G22970 AT2G22980 AT2G22980 AT2G22980 AT2G22980 AT2G22980 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G23000 AT2G23000 AT2G23010 AT2G23010 AT3G10450 AT3G10450 AT3G10450 AT3G10450 AT3G12203 AT3G12203 AT3G12203 AT3G12220 AT3G12220 AT3G12220 AT3G12230 AT3G12240 AT5G09640 AT5G36180 AT5G36180 AT5G36180 AT5G36180 AT5G36180
fragaria_vesca FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_2g03550 FvH4_2g03550 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03570 FvH4_2g03570 FvH4_2g03570 FvH4_2g32860 FvH4_2g32860 FvH4_2g32860 FvH4_6g45780
malus_domestica MD05G1102900.v1.1 MD05G1103100.v1.1 MD05G1103400.v1.1 MD05G1103600.v1.1 MD15G1067200.v1.1 MD15G1299100.v1.1 MD15G1299200.v1.1
prunus_persica Prupe.6G218600_v2.0.a1 Prupe.6G218800_v2.0.a1 Prupe.8G129900_v2.0.a1 Prupe.8G130000_v2.0.a1 Prupe.8G135600_v2.0.a1 Prupe.8G135600_v2.0.a1 Prupe.8G147500_v2.0.a1 Prupe.8G147500_v2.0.a1 Prupe.8G147600_v2.0.a1 Prupe.8G147700_v2.0.a1 Prupe.8G147800_v2.0.a1 Prupe.8G147900_v2.0.a1 Prupe.8G147900_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148300_v2.0.a1
pyrus_communis pycom05g10060 pycom08g20430 pycom10g09380 pycom15g06370
rosa_chinensis RchiOBHm_Chr2g0108421 RchiOBHm_Chr2g0155051 RchiOBHm_Chr2g0176791 RchiOBHm_Chr5g0035721 RchiOBHm_Chr5g0035731 RchiOBHm_Chr5g0043261 RchiOBHm_Chr6g0249011 RchiOBHm_Chr6g0249021 RchiOBHm_Chr6g0249041 RchiOBHm_Chr6g0249051 RchiOBHm_Chr6g0249071 RchiOBHm_Chr6g0249091 RchiOBHm_Chr6g0249111 RchiOBHm_Chr6g0249131 RchiOBHm_Chr6g0249151 RchiOBHm_Chr6g0252461 RchiOBHm_Chr6g0252481 RchiOBHm_Chr6g0252491
rosa_laevigata RLG00000001434 RLG00000015094 RLG00000015095 RLG00000015096 RLG00000015099 RLG00000015101 RLG00000015103 RLG00000017668
rosa_multiflora Rmu_co7960301.1_g000001 Rmu_co8316227.1_g000001 Rmu_co8338197.1_g000001 Rmu_co8348961.1_g000001 Rmu_sc0000290.1_g000001 Rmu_sc0000290.1_g000008 Rmu_sc0001762.1_g000019 Rmu_sc0001762.1_g000023 Rmu_sc0002016.1_g000008 Rmu_sc0002016.1_g000013 Rmu_sc0002016.1_g000016 Rmu_sc0002372.1_g000025 Rmu_sc0003692.1_g000002 Rmu_sc0003692.1_g000012 Rmu_sc0003780.1_g000008 Rmu_sc0003829.1_g000040 Rmu_sc0004823.1_g000035 Rmu_sc0004832.1_g000025 Rmu_sc0006782.1_g000011 Rmu_sc0006782.1_g000015 Rmu_sc0007382.1_g000001 Rmu_sc0009208.1_g000009 Rmu_sc0017474.1_g000001 Rmu_sc0026593.1_g000002 Rmu_sc0028609.1_g000001 Rmu_ssc0000007.1_g000002
rosa_roxburghii Rroxscaffold_1G00023310 Rroxscaffold_2G00135160 Rroxscaffold_2G00135410 Rroxscaffold_7G00212680 Rroxscaffold_7G00212690 Rroxscaffold_7G00212710 Rroxscaffold_7G00212730 Rroxscaffold_7G00212740 Rroxscaffold_7G00212770 Rroxscaffold_7G00212780
rosa_rugosa Rorug02G0152900 Rorug02G0153000 Rorug02G0153100 Rorug02G0153200 Rorug02G0153300 Rorug03G0171900 Rorug04G0031100 Rorug04G0031100 Rorug04G0031100 Rorug05G0033600 Rorug05G0033700 Rorug05G0033700 Rorug05G0534900 Rorug05G0534900 Rorug05G0535000 Rorug05G0535100 Rorug05G0535200 Rorug05G0535300 Rorug05G0535400.1 Rorug05G0535500.1 Rorug05G0535600 Rorug05G0535700 Rorug05G0535900 Rorug05G0536000.1 Rorug05G0536100.1 Rorug05G0536200 Rorug05G0536200 Rorug05G0536300 Rorug06G0002300
rosa_samantha Rh1AG086800 Rh1BG137200 Rh2AG201800 Rh2BG214700 Rh2CG205900 Rh2CG650900 Rh2DG209100 Rh2DG683600 Rh2DG701600 Rh4DG048600 Rh5BG257100 Rh5BG296800 Rh5DG266200 Rh5DG306500 Rh6AG052300 Rh6AG052500 Rh6BG009400 Rh6BG045800 Rh6BG046000 Rh6BG046100 Rh6BG046300 Rh6BG046400 Rh6BG046500 Rh6CG044400 Rh6CG044500 Rh6CG044600 Rh6CG044900 Rh6CG045100 Rh6CG045200 Rh6CG178800 Rh6DG039600 Rh6DG039800 Rh6DG040100 Rh6DG040600 Rh6DG040800 Rh6DG040900 Rh7AG465600 Rh7CG509300 Rh7DG476900
rosa_wichuraiana Rw0G003830 Rw1G008040 Rw2G016060 Rw2G016130 Rw2G053970 Rw4G021320 Rw6G004520 Rw6G004560 Rw6G004640 Rw6G004660 Rw6G004670 Rw6G004680 Rw6G004700 Rw6G004720 Rw6G004730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 261
AfaI GTAC 1 cut(s) 61
AfiI CCNNNNNNNGG 1 cut(s) 162
AgsI TTSAA 1 cut(s) 329
AhlI ACTAGT 1 cut(s) 48
AjnI CCWGG 1 cut(s) 174
AjuI GAANNNNNNNTTGG 2 cut(s) 249, 281
AluBI AGCT 2 cut(s) 43, 318
AluI AGCT 2 cut(s) 43, 318
ApeKI GCWGC 1 cut(s) 369
AsuHPI GGTGA 3 cut(s) 38, 81, 147
BaeGI GKGCMC 1 cut(s) 168
BbvI GCAGC 1 cut(s) 381
BccI CCATC 1 cut(s) 355
BciT130I CCWGG 1 cut(s) 176
BciVI GTATCC 1 cut(s) 240
BclI TGATCA 2 cut(s) 137, 352
BcuI ACTAGT 1 cut(s) 48
BfaI CTAG 1 cut(s) 49
BfmI CTRYAG 2 cut(s) 113, 381
BfuI GTATCC 1 cut(s) 240
BisI GCNGC 1 cut(s) 370
BlsI GCNGC 1 cut(s) 371
Bme1390I CCNGG 1 cut(s) 176
BmiI GGNNCC 1 cut(s) 305
BmrFI CCNGG 1 cut(s) 176
BmsI GCATC 1 cut(s) 22
BpmI CTGGAG 1 cut(s) 304
BsaJI CCNNGG 1 cut(s) 219
Bsc4I CCNNNNNNNGG 1 cut(s) 162
Bse118I RCCGGY 1 cut(s) 306
BseBI CCWGG 1 cut(s) 176
BseDI CCNNGG 1 cut(s) 219
BseLI CCNNNNNNNGG 1 cut(s) 162
BseSI GKGCMC 1 cut(s) 168
BseXI GCAGC 1 cut(s) 381
BsiSI CCGG 1 cut(s) 307
BslI CCNNNNNNNGG 1 cut(s) 162
Bsp1286I GDGCHC 1 cut(s) 168
Bsp1407I TGTACA 1 cut(s) 59
Bsp143I GATC 2 cut(s) 137, 352
BspHI TCATGA 1 cut(s) 140
BspLI GGNNCC 1 cut(s) 305
BsrFI RCCGGY 1 cut(s) 306
BsrGI TGTACA 1 cut(s) 59
BssAI RCCGGY 1 cut(s) 306
BssECI CCNNGG 1 cut(s) 219
BssMI GATC 2 cut(s) 137, 352
BssNAI GTATAC 1 cut(s) 262
BssT1I CCWWGG 1 cut(s) 219
Bst1107I GTATAC 1 cut(s) 262
Bst2UI CCWGG 1 cut(s) 176
Bst4CI ACNGT 3 cut(s) 80, 207, 296
BstAPI GCANNNNNTGC 1 cut(s) 240
BstAUI TGTACA 1 cut(s) 59
BstKTI GATC 2 cut(s) 140, 355
BstMBI GATC 2 cut(s) 137, 352
BstMWI GCNNNNNNNGC 1 cut(s) 240
BstNI CCWGG 1 cut(s) 176
BstSCI CCNGG 1 cut(s) 174
BstSFI CTRYAG 2 cut(s) 113, 381
BstSLI GKGCMC 1 cut(s) 168
BstV1I GCAGC 1 cut(s) 381
BstZ17I GTATAC 1 cut(s) 262
BsuI GTATCC 1 cut(s) 240
CciI TCATGA 1 cut(s) 140
Cfr10I RCCGGY 1 cut(s) 306
Csp6I GTAC 1 cut(s) 60
CviAII CATG 2 cut(s) 141, 146
CviJI RGCY 5 cut(s) 43, 112, 306, 318, 372
CviKI_1 RGCY 5 cut(s) 43, 112, 306, 318, 372
CviQI GTAC 1 cut(s) 60
DpnI GATC 2 cut(s) 139, 354
DpnII GATC 2 cut(s) 137, 352
Eco130I CCWWGG 1 cut(s) 219
EcoRII CCWGG 1 cut(s) 174
EcoT14I CCWWGG 1 cut(s) 219
ErhI CCWWGG 1 cut(s) 219
FaeI CATG 2 cut(s) 144, 149
FatI CATG 2 cut(s) 140, 145
FauNDI CATATG 2 cut(s) 56, 158
FbaI TGATCA 2 cut(s) 137, 352
FblI GTMKAC 1 cut(s) 261
Fnu4HI GCNGC 1 cut(s) 370
Fsp4HI GCNGC 1 cut(s) 370
FspBI CTAG 1 cut(s) 49
GluI GCNGC 1 cut(s) 370
GsuI CTGGAG 1 cut(s) 304
HapII CCGG 1 cut(s) 307
Hin1II CATG 2 cut(s) 144, 149
HincII GTYRAC 1 cut(s) 283
HindII GTYRAC 1 cut(s) 283
HinfI GANTC 3 cut(s) 183, 197, 215
HpaII CCGG 1 cut(s) 307
HphI GGTGA 3 cut(s) 38, 81, 147
Hpy166II GTNNAC 2 cut(s) 262, 283
Hpy188I TCNGA 2 cut(s) 124, 190
Hpy188III TCNNGA 3 cut(s) 141, 201, 321
Hpy8I GTNNAC 2 cut(s) 262, 283
HpyCH4III ACNGT 3 cut(s) 80, 207, 296
HpyCH4V TGCA 2 cut(s) 234, 243
HpyF10VI GCNNNNNNNGC 1 cut(s) 240
Hsp92II CATG 2 cut(s) 144, 149
Ksp22I TGATCA 2 cut(s) 137, 352
Kzo9I GATC 2 cut(s) 137, 352
LmnI GCTCC 2 cut(s) 303, 323
LpnPI CCDG 6 cut(s) 161, 186, 188, 229, 320, 334
Lsp1109I GCAGC 1 cut(s) 381
LweI GCATC 1 cut(s) 22
MaeI CTAG 1 cut(s) 49
MaeIII GTNAC 1 cut(s) 309
MalI GATC 2 cut(s) 139, 354
MboI GATC 2 cut(s) 137, 352
MboII GAAGA 1 cut(s) 64
MhlI GDGCHC 1 cut(s) 168
MluCI AATT 1 cut(s) 238
MlyI GAGTC 1 cut(s) 191
MnlI CCTC 1 cut(s) 108
MseI TTAA 2 cut(s) 45, 229
MspI CCGG 1 cut(s) 307
MspR9I CCNGG 1 cut(s) 176
MvaI CCWGG 1 cut(s) 176
MwoI GCNNNNNNNGC 1 cut(s) 240
NdeI CATATG 2 cut(s) 56, 158
NdeII GATC 2 cut(s) 137, 352
NlaIII CATG 2 cut(s) 144, 149
NlaIV GGNNCC 1 cut(s) 305
NmuCI GTSAC 1 cut(s) 309
PagI TCATGA 1 cut(s) 140
PfeI GAWTC 2 cut(s) 183, 215
PkrI GCNGC 1 cut(s) 371
PleI GAGTC 1 cut(s) 191
PpsI GAGTC 1 cut(s) 191
Psp6I CCWGG 1 cut(s) 174
PspGI CCWGG 1 cut(s) 174
PspN4I GGNNCC 1 cut(s) 305
RsaI GTAC 1 cut(s) 61
RsaNI GTAC 1 cut(s) 60
SaqAI TTAA 2 cut(s) 45, 229
SatI GCNGC 1 cut(s) 370
Sau3AI GATC 2 cut(s) 137, 352
SchI GAGTC 1 cut(s) 191
ScrFI CCNGG 1 cut(s) 176
SduI GDGCHC 1 cut(s) 168
SetI ASST 4 cut(s) 45, 100, 177, 320
SfaNI GCATC 1 cut(s) 22
SfcI CTRYAG 2 cut(s) 113, 381
SpeI ACTAGT 1 cut(s) 48
Sse9I AATT 1 cut(s) 238
SspMI CTAG 1 cut(s) 49
StyD4I CCNGG 1 cut(s) 174
StyI CCWWGG 1 cut(s) 219
TaaI ACNGT 3 cut(s) 80, 207, 296
TasI AATT 1 cut(s) 238
TatI WGTACW 1 cut(s) 59
TfiI GAWTC 2 cut(s) 183, 215
Tru1I TTAA 2 cut(s) 45, 229
Tru9I TTAA 2 cut(s) 45, 229
TseFI GTSAC 1 cut(s) 309
TseI GCWGC 1 cut(s) 369
Tsp45I GTSAC 1 cut(s) 309
TspDTI ATGAA 1 cut(s) 43
XmiI GTMKAC 1 cut(s) 261
XspI CTAG 1 cut(s) 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.