Rorug05G0535700

Belongs to the peptidase S10 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000102
Physical Location & Seq
Reverse (-)
72393604 .. 72401112
7509 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0535700.1

Sequence Viewer

Length: 2157 bp
ATGCTCGGTGCTACAGCATCGAGGTTCTACAGAGTCACCGGCCTTGTCTTCCGTTCCCACCAACCCCTCCAAAGCCGCAACCTTTTCTCTTCCTCCATTTCAAAAACCTCCTTCCATGGAAACCCTATTCTTCTTCTTCCCCAAACAACATCCAGAAGAAGAATCATTCCTCTCCAAATCAACGCCTTCGTCTCCGGCACCTCCTCCTCCTCCTCCGCCCCTCCTTCTCCGCCGAACGGCCGGGCATGGCTATCCACTTCGGCGCCGGACCAGACCAATCCACGGCCTTTCGTCCCTAAAAAGACTCCCGACGAACAAGTCGGCGACGTCCAGATCTTCCGGACGCTCGCCAGTTACTTGTGGATGAAAGACAACTATGAATTCCGGCTTAGGGTTCTTACTGCCTTGGGGTTTTTGGTTGGGGCTAAGGTGCTCAATGTCCAGGTGCCGTTTCTGTTCAAGCTCGCCGTGGATTGGTTGACCACGGCGACCGGAAATGCTGGTAGTTTTGCGGCGTTCTCTGCCGCCAATCCGACTCAGTTGGCTCTTTTCGCAACGCCCGCGTCGGTTTTGATTGGCTATGGTATTGCACGCTCTGGCGCTTCTGCTTTCAACGAATTGAGGACTGCTGTGTTTTCTAAGGTAGCATTGCGAACAATCCGATCAGTATCCAGGAAGGTCTTCTCACATTTGCATGACCTTGATCTTCGATATCATCTTAGTCGAGAAACCGGTGCACTAAATAGAATCATTGATCGCGGTAGCCGTGCTATAAATTTCATTCTCTCATCTATGGTATTCAATGTTGTACCCACCATTTTAGAGATATCTATGGTTTCAGGTATACTGGCTTACAAATTTGGAGCACCTTTTGCATGGATAACATCACTATCAGTTGCTGCATATATTGCATTTACATTGACTGTTACACAGTGGAGGACGAAGTTCAGGAAGGCCATGAATAAGGCCGATAATGATGCTAGTACAAGGGCAATTGATTCACTTATTAATTATGAGACTGTCAAATATTTCAACAATGAAGGTTTTGAAGCTGATAAATATGACAAATACTTAAAGAGGTATGAAGATGCTGCCTTAAAAACACAACGTAGTCTTGCTTTTCTGAACTTCGGCCAAAGTATCATATTCAGCACAGCTTTATCAACGGCTATGGTGTTGTGTTCAAATGGTATTATGAATGGCAGTATGACAGTTGGTGATTTGGTCATGGTAAATGGACTTCTATTCCAGCTATCACTTCCACTCAATTTCCTTGGTAGTGTTTATCGTGAGACCATACAGAGCCTTGTTGACATGAAATCCATGTTTCAGTTACTGGAGGAAAGGGCTGAAATTAGAGACAAAGATGACGCAAAGCCTCTGCACCTAAGCGGGGGGAGCATTCAGTTTGACAACGTGCATTTCAGTTACGTAACGGAAAGAAAGATTCTTGATGAGATATCATTTCTTGTACCTGCTGGAAAGAGTGTGGCTATTGTTGGAACCAGCGGTAGTGGAAAGTCAACCATTCTCAGATTGCTGTTCAGGTTTTTTGACAGCCATTCCGGAAGTATAAGGATAGACGGTCAAGATATTCGAGATGTGACACTTGAGAGTTTGCGGAACTGTATTGGAGTTGTGCCGCAAGATACAGTACTTTTCAATGATACAATATACCACAACATTCATTATGGCCGTCTTTCAGCAACAAAAGAAGAGGTGTATGAAGCTGCTCGACGTGCAGCAATACATGATACTATCATGAACTTTCCCGACAGATATTCTACTGAAGTGGGGGAACGGGGGCTCAAGTTAAGTGGTGGGGAGAAGCAGCGTGTGGCACTGGCTCGTGCTTTCTTGAAAGCACCTCCAATTCTGTTATGTGATGAAGCTACAAGTGCACTAGATAGCACCACAGAAGCGGAAATATTAAGTGCATTGAAGTCCTTGGCAACCAACCGAACTTCAGTTTTCATTGCTCATAGGCTGACTACTGCAATGCAGTGCGATGAGATAATAGTTCTGGAGAATGGGCAAGTGGTTGAGCAGGGACCCCATGATGTTCTCTTGTCTAAGGCAGGAAGATATGCACAGCTCTGGGGACAGCAAAATAACACAGTTGATGCACTTGATGCCACCATCAAAACAGGGACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S10

Protein Analysis

718

Amino Acids

79.2

Weight (kDa)

9.36

Isoelectric Point (pI)

30.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 135 - 421 1.5e-37 ABC transporter transmembrane region
ABC_tran PF00005 484 - 633 3.6e-32 ABC transporter
SMC_N PF02463 496 - 675 1.1e-06 RecF/RecN/SMC N terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000102)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33540 AT1G33540 AT1G73270 AT1G73270 AT1G73280 AT1G73280 AT1G73280 AT1G73280 AT1G73290 AT1G73290 AT1G73290 AT1G73300 AT1G73300 AT1G73310 AT1G73310 AT1G73310 AT2G22920 AT2G22920 AT2G22920 AT2G22920 AT2G22960 AT2G22970 AT2G22970 AT2G22970 AT2G22970 AT2G22980 AT2G22980 AT2G22980 AT2G22980 AT2G22980 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G23000 AT2G23000 AT2G23010 AT2G23010 AT3G10450 AT3G10450 AT3G10450 AT3G10450 AT3G12203 AT3G12203 AT3G12203 AT3G12220 AT3G12220 AT3G12220 AT3G12230 AT3G12240 AT5G09640 AT5G36180 AT5G36180 AT5G36180 AT5G36180 AT5G36180
fragaria_vesca FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_2g03550 FvH4_2g03550 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03570 FvH4_2g03570 FvH4_2g03570 FvH4_2g32860 FvH4_2g32860 FvH4_2g32860 FvH4_6g45780
malus_domestica MD05G1102900.v1.1 MD05G1103100.v1.1 MD05G1103400.v1.1 MD05G1103600.v1.1 MD15G1067200.v1.1 MD15G1299100.v1.1 MD15G1299200.v1.1
prunus_persica Prupe.6G218600_v2.0.a1 Prupe.6G218800_v2.0.a1 Prupe.8G129900_v2.0.a1 Prupe.8G130000_v2.0.a1 Prupe.8G135600_v2.0.a1 Prupe.8G135600_v2.0.a1 Prupe.8G147500_v2.0.a1 Prupe.8G147500_v2.0.a1 Prupe.8G147600_v2.0.a1 Prupe.8G147700_v2.0.a1 Prupe.8G147800_v2.0.a1 Prupe.8G147900_v2.0.a1 Prupe.8G147900_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148300_v2.0.a1
pyrus_communis pycom05g10060 pycom08g20430 pycom10g09380 pycom15g06370
rosa_chinensis RchiOBHm_Chr2g0108421 RchiOBHm_Chr2g0155051 RchiOBHm_Chr2g0176791 RchiOBHm_Chr5g0035721 RchiOBHm_Chr5g0035731 RchiOBHm_Chr5g0043261 RchiOBHm_Chr6g0249011 RchiOBHm_Chr6g0249021 RchiOBHm_Chr6g0249041 RchiOBHm_Chr6g0249051 RchiOBHm_Chr6g0249071 RchiOBHm_Chr6g0249091 RchiOBHm_Chr6g0249111 RchiOBHm_Chr6g0249131 RchiOBHm_Chr6g0249151 RchiOBHm_Chr6g0252461 RchiOBHm_Chr6g0252481 RchiOBHm_Chr6g0252491
rosa_laevigata RLG00000001434 RLG00000015094 RLG00000015095 RLG00000015096 RLG00000015099 RLG00000015101 RLG00000015103 RLG00000017668
rosa_multiflora Rmu_co7960301.1_g000001 Rmu_co8316227.1_g000001 Rmu_co8338197.1_g000001 Rmu_co8348961.1_g000001 Rmu_sc0000290.1_g000001 Rmu_sc0000290.1_g000008 Rmu_sc0001762.1_g000019 Rmu_sc0001762.1_g000023 Rmu_sc0002016.1_g000008 Rmu_sc0002016.1_g000013 Rmu_sc0002016.1_g000016 Rmu_sc0002372.1_g000025 Rmu_sc0003692.1_g000002 Rmu_sc0003692.1_g000012 Rmu_sc0003780.1_g000008 Rmu_sc0003829.1_g000040 Rmu_sc0004823.1_g000035 Rmu_sc0004832.1_g000025 Rmu_sc0006782.1_g000011 Rmu_sc0006782.1_g000015 Rmu_sc0007382.1_g000001 Rmu_sc0009208.1_g000009 Rmu_sc0017474.1_g000001 Rmu_sc0026593.1_g000002 Rmu_sc0028609.1_g000001 Rmu_ssc0000007.1_g000002
rosa_roxburghii Rroxscaffold_1G00023310 Rroxscaffold_2G00135160 Rroxscaffold_2G00135410 Rroxscaffold_7G00212680 Rroxscaffold_7G00212690 Rroxscaffold_7G00212710 Rroxscaffold_7G00212730 Rroxscaffold_7G00212740 Rroxscaffold_7G00212770 Rroxscaffold_7G00212780
rosa_rugosa Rorug02G0152900 Rorug02G0153000 Rorug02G0153100 Rorug02G0153200 Rorug02G0153300 Rorug03G0171900 Rorug04G0031100 Rorug04G0031100 Rorug04G0031100 Rorug05G0033600 Rorug05G0033700 Rorug05G0033700 Rorug05G0534900 Rorug05G0534900 Rorug05G0535000 Rorug05G0535100 Rorug05G0535200 Rorug05G0535300 Rorug05G0535400.1 Rorug05G0535500.1 Rorug05G0535600 Rorug05G0535700 Rorug05G0535900 Rorug05G0536000.1 Rorug05G0536100.1 Rorug05G0536200 Rorug05G0536200 Rorug05G0536300 Rorug06G0002300
rosa_samantha Rh1AG086800 Rh1BG137200 Rh2AG201800 Rh2BG214700 Rh2CG205900 Rh2CG650900 Rh2DG209100 Rh2DG683600 Rh2DG701600 Rh4DG048600 Rh5BG257100 Rh5BG296800 Rh5DG266200 Rh5DG306500 Rh6AG052300 Rh6AG052500 Rh6BG009400 Rh6BG045800 Rh6BG046000 Rh6BG046100 Rh6BG046300 Rh6BG046400 Rh6BG046500 Rh6CG044400 Rh6CG044500 Rh6CG044600 Rh6CG044900 Rh6CG045100 Rh6CG045200 Rh6CG178800 Rh6DG039600 Rh6DG039800 Rh6DG040100 Rh6DG040600 Rh6DG040800 Rh6DG040900 Rh7AG465600 Rh7CG509300 Rh7DG476900
rosa_wichuraiana Rw0G003830 Rw1G008040 Rw2G016060 Rw2G016130 Rw2G053970 Rw4G021320 Rw6G004520 Rw6G004560 Rw6G004640 Rw6G004660 Rw6G004670 Rw6G004680 Rw6G004700 Rw6G004720 Rw6G004730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 317
AatII GACGTC 1 cut(s) 330
Acc36I ACCTGC 1 cut(s) 1483
AccB1I GGYRCC 3 cut(s) 197, 262, 445
AccI GTMKAC 1 cut(s) 844
AccII CGCG 2 cut(s) 563, 759
AccIII TCCGGA 2 cut(s) 339, 1565
AcoI YGGCCR 3 cut(s) 238, 1132, 1693
AcsI RAATTY 3 cut(s) 380, 775, 857
AcuI CTGAAG 2 cut(s) 1809, 1950
AcyI GRCGYC 2 cut(s) 263, 327
AfaI GTAC 4 cut(s) 810, 985, 1473, 1656
AfiI CCNNNNNNNGG 5 cut(s) 236, 282, 391, 474, 1393
AgeI ACCGGT 1 cut(s) 731
AjiI CACGTC 1 cut(s) 1739
AjnI CCWGG 2 cut(s) 441, 671
AluBI AGCT 7 cut(s) 463, 1052, 1157, 1252, 1730, 1892, 2095
AluI AGCT 7 cut(s) 463, 1052, 1157, 1252, 1730, 1892, 2095
Alw21I GWGCWC 4 cut(s) 435, 739, 868, 1903
Alw26I GTCTC 4 cut(s) 196, 1010, 1286, 1353
Alw44I GTGCAC 2 cut(s) 735, 1899
AlwNI CAGNNNCTG 2 cut(s) 899, 1336
Aor13HI TCCGGA 2 cut(s) 339, 1565
AoxI GGCC 7 cut(s) 40, 238, 284, 954, 966, 1132, 1693
ApaLI GTGCAC 2 cut(s) 735, 1899
ApeKI GCWGC 5 cut(s) 899, 1091, 1730, 1742, 1831
ApoI RAATTY 3 cut(s) 380, 775, 857
AseI ATTAAT 1 cut(s) 1008
AsiGI ACCGGT 1 cut(s) 731
Asp700I GAANNNNTTC 1 cut(s) 680
AspLEI GCGC 2 cut(s) 265, 602
AspS9I GGNCC 2 cut(s) 268, 2051
AsuC2I CCSGG 1 cut(s) 242
AsuHPI GGTGA 2 cut(s) 28, 1229
AvaII GGWCC 2 cut(s) 268, 2051
BaeGI GKGCMC 2 cut(s) 739, 1903
BanI GGYRCC 3 cut(s) 197, 262, 445
BanII GRGCYC 1 cut(s) 1809
BarI GAAGNNNNNNTAC 2 cut(s) 1224, 1256
BauI CACGAG 1 cut(s) 1848
BbsI GAAGAC 2 cut(s) 40, 673
Bbv12I GWGCWC 4 cut(s) 435, 739, 868, 1903
BbvI GCAGC 5 cut(s) 886, 1078, 1717, 1754, 1843
BccI CCATC 1 cut(s) 2147
BceAI ACGGC 8 cut(s) 253, 299, 433, 452, 501, 750, 1182, 1680
BcgI CGANNNNNNTGC 2 cut(s) 959, 993
BciT130I CCWGG 2 cut(s) 443, 673
BciVI GTATCC 1 cut(s) 679
BcnI CCSGG 1 cut(s) 242
BcoDI GTCTC 4 cut(s) 196, 1010, 1286, 1353
BfaI CTAG 2 cut(s) 981, 1904
BfmI CTRYAG 2 cut(s) 12, 28
BfoI RGCGCY 2 cut(s) 266, 603
BfuAI ACCTGC 1 cut(s) 1483
BfuI GTATCC 1 cut(s) 679
BglII AGATCT 1 cut(s) 333
BisI GCNGC 9 cut(s) 76, 513, 525, 900, 1092, 1643, 1731, 1743, 1832
BlsI GCNGC 9 cut(s) 77, 514, 526, 901, 1093, 1644, 1732, 1744, 1833
BmcAI AGTACT 1 cut(s) 1656
Bme1390I CCNGG 3 cut(s) 242, 443, 673
Bme18I GGWCC 2 cut(s) 268, 2051
BmgBI CACGTC 1 cut(s) 1739
BmgT120I GGNCC 2 cut(s) 268, 2051
BmiI GGNNCC 6 cut(s) 199, 264, 447, 1504, 2052, 2053
BmrFI CCNGG 3 cut(s) 242, 443, 673
BmsI GCATC 5 cut(s) 26, 967, 1078, 2113, 2122
BpiI GAAGAC 2 cut(s) 40, 673
BpmI CTGGAG 2 cut(s) 1358, 2045
Bpu10I CCTNAGC 3 cut(s) 389, 426, 1388
BpuEI CTTGAG 2 cut(s) 1631, 1793
BpuMI CCSGG 1 cut(s) 242
BsaAI YACGTR 1 cut(s) 1432
BsaBI GATNNNNATC 1 cut(s) 667
BsaHI GRCGYC 2 cut(s) 263, 327
BsaI GGTCTC 1 cut(s) 1286
BsaJI CCNNGG 7 cut(s) 115, 281, 405, 468, 483, 1273, 1947
BsaWI WCCGGW 4 cut(s) 339, 491, 731, 1565
Bsc4I CCNNNNNNNGG 5 cut(s) 236, 282, 391, 474, 1393
Bse118I RCCGGY 2 cut(s) 38, 731
Bse1I ACTGG 4 cut(s) 351, 852, 1341, 1848
Bse3DI GCAATG 3 cut(s) 647, 1974, 2004
Bse8I GATNNNNATC 1 cut(s) 667
BseAI TCCGGA 2 cut(s) 339, 1565
BseBI CCWGG 2 cut(s) 443, 673
BseDI CCNNGG 7 cut(s) 115, 281, 405, 468, 483, 1273, 1947
BseGI GGATG 2 cut(s) 149, 369
BseJI GATNNNNATC 1 cut(s) 667
BseLI CCNNNNNNNGG 5 cut(s) 236, 282, 391, 474, 1393
BseMI GCAATG 3 cut(s) 647, 1974, 2004
BseMII CTCAG 2 cut(s) 551, 1546
BseNI ACTGG 4 cut(s) 351, 852, 1341, 1848
BseRI GAGGAG 4 cut(s) 193, 196, 199, 202
BseSI GKGCMC 2 cut(s) 739, 1903
BseX3I CGGCCG 1 cut(s) 238
BseXI GCAGC 5 cut(s) 886, 1078, 1717, 1754, 1843
BsgI GTGCAG 2 cut(s) 1367, 1761
Bsh1236I CGCG 2 cut(s) 563, 759
Bsh1285I CGRYCG 2 cut(s) 241, 492
BshFI GGCC 7 cut(s) 42, 240, 286, 956, 968, 1134, 1695
BshNI GGYRCC 3 cut(s) 197, 262, 445
BshTI ACCGGT 1 cut(s) 731
BsiEI CGRYCG 2 cut(s) 241, 492
BsiHKAI GWGCWC 4 cut(s) 435, 739, 868, 1903
BsiSI CCGG 9 cut(s) 39, 195, 241, 266, 340, 385, 492, 732, 1566
BslFI GGGAC 3 cut(s) 278, 2064, 2115
BslI CCNNNNNNNGG 5 cut(s) 236, 282, 391, 474, 1393
BsmAI GTCTC 4 cut(s) 196, 1010, 1286, 1353
BsmBI CGTCTC 1 cut(s) 196
BsmFI GGGAC 3 cut(s) 278, 2064, 2115
BsmI GAATGC 1 cut(s) 1401
BsnI GGCC 7 cut(s) 42, 240, 286, 956, 968, 1134, 1695
Bso31I GGTCTC 1 cut(s) 1286
Bsp1286I GDGCHC 5 cut(s) 435, 739, 868, 1809, 1903
Bsp13I TCCGGA 2 cut(s) 339, 1565
Bsp143I GATC 4 cut(s) 333, 662, 703, 754
Bsp19I CCATGG 1 cut(s) 115
BspANI GGCC 7 cut(s) 42, 240, 286, 956, 968, 1134, 1695
BspCNI CTCAG 2 cut(s) 550, 1545
BspEI TCCGGA 2 cut(s) 339, 1565
BspFNI CGCG 2 cut(s) 563, 759
BspHI TCATGA 1 cut(s) 1761
BspLI GGNNCC 6 cut(s) 199, 264, 447, 1504, 2052, 2053
BspMI ACCTGC 1 cut(s) 1483
BspT107I GGYRCC 3 cut(s) 197, 262, 445
BspTNI GGTCTC 1 cut(s) 1286
BsrDI GCAATG 3 cut(s) 647, 1974, 2004
BsrFI RCCGGY 2 cut(s) 38, 731
BsrI ACTGG 4 cut(s) 351, 852, 1341, 1848
BssAI RCCGGY 2 cut(s) 38, 731
BssECI CCNNGG 7 cut(s) 115, 281, 405, 468, 483, 1273, 1947
BssMI GATC 4 cut(s) 333, 662, 703, 754
BssNAI GTATAC 1 cut(s) 845
BssNI GRCGYC 2 cut(s) 263, 327
BssSI CACGAG 1 cut(s) 1848
BssT1I CCWWGG 4 cut(s) 115, 405, 1273, 1947
Bst1107I GTATAC 1 cut(s) 845
Bst2BI CACGAG 1 cut(s) 1848
Bst2UI CCWGG 2 cut(s) 443, 673
Bst4CI ACNGT 8 cut(s) 925, 933, 1021, 1213, 1586, 1628, 1654, 2119
Bst6I CTCTTC 2 cut(s) 94, 1710
BstACI GRCGYC 2 cut(s) 263, 327
BstAPI GCANNNNNTGC 3 cut(s) 872, 908, 2132
BstBAI YACGTR 1 cut(s) 1432
BstC8I GCNNGC 4 cut(s) 348, 465, 561, 592
BstDEI CTNAG 8 cut(s) 389, 426, 537, 639, 719, 1388, 1532, 2073
BstDSI CCRYGG 4 cut(s) 115, 281, 468, 483
BstF5I GGATG 2 cut(s) 149, 369
BstFNI CGCG 2 cut(s) 563, 759
BstH2I RGCGCY 2 cut(s) 266, 603
BstHHI GCGC 2 cut(s) 265, 602
BstKTI GATC 4 cut(s) 336, 665, 706, 757
BstMAI GTCTC 4 cut(s) 196, 1010, 1286, 1353
BstMBI GATC 4 cut(s) 333, 662, 703, 754
BstMCI CGRYCG 2 cut(s) 241, 492
BstMWI GCNNNNNNNGC 9 cut(s) 521, 551, 560, 872, 908, 1398, 1739, 1898, 2132
BstNI CCWGG 2 cut(s) 443, 673
BstSCI CCNGG 3 cut(s) 240, 441, 671
BstSFI CTRYAG 2 cut(s) 12, 28
BstSLI GKGCMC 2 cut(s) 739, 1903
BstSNI TACGTA 1 cut(s) 1432
BstUI CGCG 2 cut(s) 563, 759
BstV1I GCAGC 5 cut(s) 886, 1078, 1717, 1754, 1843
BstV2I GAAGAC 2 cut(s) 40, 673
BstX2I RGATCY 1 cut(s) 333
BstYI RGATCY 1 cut(s) 333
BstZ17I GTATAC 1 cut(s) 845
BstZI CGGCCG 1 cut(s) 238
BsuI GTATCC 1 cut(s) 679
BsuRI GGCC 7 cut(s) 42, 240, 286, 956, 968, 1134, 1695
BtgI CCRYGG 4 cut(s) 115, 281, 468, 483
BtgZI GCGATG 1 cut(s) 2022
BtrI CACGTC 1 cut(s) 1739
BtsCI GGATG 2 cut(s) 149, 369
BtsI GCAGTG 1 cut(s) 2009
BtsIMutI CAGTG 3 cut(s) 938, 1841, 2009
BveI ACCTGC 1 cut(s) 1483
Cac8I GCNNGC 4 cut(s) 348, 465, 561, 592
CaiI CAGNNNCTG 2 cut(s) 899, 1336
CciI TCATGA 1 cut(s) 1761
CfoI GCGC 2 cut(s) 265, 602
Cfr10I RCCGGY 2 cut(s) 38, 731
Cfr13I GGNCC 2 cut(s) 268, 2051
CseI GACGC 3 cut(s) 352, 552, 1379
Csp6I GTAC 4 cut(s) 809, 984, 1472, 1655
CspAI ACCGGT 1 cut(s) 731
CspCI CAANNNNNGTGG 2 cut(s) 1798, 1833
CviQI GTAC 4 cut(s) 809, 984, 1472, 1655
DdeI CTNAG 8 cut(s) 389, 426, 537, 639, 719, 1388, 1532, 2073
DinI GGCGCC 1 cut(s) 264
DpnI GATC 4 cut(s) 335, 664, 705, 756
DpnII GATC 4 cut(s) 333, 662, 703, 754
DrdI GACNNNNNNGTC 1 cut(s) 317
DseDI GACNNNNNNGTC 1 cut(s) 317
EaeI YGGCCR 3 cut(s) 238, 1132, 1693
EagI CGGCCG 1 cut(s) 238
Eam1104I CTCTTC 2 cut(s) 94, 1710
EarI CTCTTC 2 cut(s) 94, 1710
EciI GGCGGA 2 cut(s) 205, 219
EclXI CGGCCG 1 cut(s) 238
Eco105I TACGTA 1 cut(s) 1432
Eco130I CCWWGG 4 cut(s) 115, 405, 1273, 1947
Eco24I GRGCYC 1 cut(s) 1809
Eco31I GGTCTC 1 cut(s) 1286
Eco32I GATATC 3 cut(s) 713, 828, 1461
Eco47I GGWCC 2 cut(s) 268, 2051
Eco52I CGGCCG 1 cut(s) 238
Eco57I CTGAAG 2 cut(s) 1809, 1950
EcoO109I RGGNCCY 1 cut(s) 2051
EcoRI GAATTC 1 cut(s) 380
EcoRII CCWGG 2 cut(s) 441, 671
EcoRV GATATC 3 cut(s) 713, 828, 1461
EcoT14I CCWWGG 4 cut(s) 115, 405, 1273, 1947
EcoT38I GRGCYC 1 cut(s) 1809
EgeI GGCGCC 1 cut(s) 264
EheI GGCGCC 1 cut(s) 264
ErhI CCWWGG 4 cut(s) 115, 405, 1273, 1947
Esp3I CGTCTC 1 cut(s) 196
FaqI GGGAC 3 cut(s) 278, 2064, 2115
FauI CCCGC 2 cut(s) 568, 1385
FblI GTMKAC 1 cut(s) 844
Fnu4HI GCNGC 9 cut(s) 76, 513, 525, 900, 1092, 1643, 1731, 1743, 1832
FokI GGATG 2 cut(s) 136, 376
FriOI GRGCYC 1 cut(s) 1809
Fsp4HI GCNGC 9 cut(s) 76, 513, 525, 900, 1092, 1643, 1731, 1743, 1832
FspBI CTAG 2 cut(s) 981, 1904
GlaI GCGC 2 cut(s) 264, 601
GluI GCNGC 9 cut(s) 76, 513, 525, 900, 1092, 1643, 1731, 1743, 1832
GsuI CTGGAG 2 cut(s) 1358, 2045
HaeII RGCGCY 2 cut(s) 266, 603
HaeIII GGCC 7 cut(s) 42, 240, 286, 956, 968, 1134, 1695
HapII CCGG 9 cut(s) 39, 195, 241, 266, 340, 385, 492, 732, 1566
HgaI GACGC 3 cut(s) 352, 552, 1379
HhaI GCGC 2 cut(s) 265, 602
Hin1I GRCGYC 2 cut(s) 263, 327
Hin6I GCGC 2 cut(s) 263, 600
HinP1I GCGC 2 cut(s) 263, 600
HincII GTYRAC 3 cut(s) 480, 1312, 1524
HindII GTYRAC 3 cut(s) 480, 1312, 1524
HinfI GANTC 7 cut(s) 33, 162, 304, 535, 747, 998, 1447
HpaII CCGG 9 cut(s) 39, 195, 241, 266, 340, 385, 492, 732, 1566
HphI GGTGA 2 cut(s) 28, 1229
Hpy166II GTNNAC 6 cut(s) 480, 737, 845, 1312, 1524, 1901
Hpy188I TCNGA 4 cut(s) 534, 662, 1125, 1535
Hpy8I GTNNAC 6 cut(s) 480, 737, 845, 1312, 1524, 1901
Hpy99I CGWCG 4 cut(s) 314, 329, 568, 1740
HpyAV CCTTC 6 cut(s) 121, 196, 234, 670, 946, 1034
HpyCH4III ACNGT 8 cut(s) 925, 933, 1021, 1213, 1586, 1628, 1654, 2119
HpyCH4IV ACGT 5 cut(s) 327, 1108, 1416, 1431, 1738
HpyF10VI GCNNNNNNNGC 9 cut(s) 521, 551, 560, 872, 908, 1398, 1739, 1898, 2132
HpyF3I CTNAG 8 cut(s) 389, 426, 537, 639, 719, 1388, 1532, 2073
HpySE526I ACGT 5 cut(s) 327, 1108, 1416, 1431, 1738
Hsp92I GRCGYC 2 cut(s) 263, 327
HspAI GCGC 2 cut(s) 263, 600
KasI GGCGCC 1 cut(s) 262
KflI GGGWCCC 1 cut(s) 2051
Kpn2I TCCGGA 2 cut(s) 339, 1565
Kzo9I GATC 4 cut(s) 333, 662, 703, 754
LmnI GCTCC 2 cut(s) 863, 1398
Lsp1109I GCAGC 5 cut(s) 886, 1078, 1717, 1754, 1843
LweI GCATC 5 cut(s) 26, 967, 1078, 2113, 2122
MaeI CTAG 2 cut(s) 981, 1904
MaeII ACGT 5 cut(s) 327, 1108, 1416, 1431, 1738
MaeIII GTNAC 7 cut(s) 34, 353, 925, 1332, 1427, 1432, 1603
MalI GATC 4 cut(s) 335, 664, 705, 756
MboI GATC 4 cut(s) 333, 662, 703, 754
MfeI CAATTG 1 cut(s) 993
MflI RGATCY 1 cut(s) 333
MhlI GDGCHC 5 cut(s) 435, 739, 868, 1809, 1903
MluCI AATT 9 cut(s) 380, 617, 775, 857, 993, 1009, 1267, 1353, 1872
Mly113I GGCGCC 1 cut(s) 263
MlyI GAGTC 3 cut(s) 42, 298, 529
MmeI TCCRAC 2 cut(s) 557, 1480
MroI TCCGGA 2 cut(s) 339, 1565
MroXI GAANNNNTTC 1 cut(s) 680
MseI TTAA 5 cut(s) 1008, 1073, 1097, 1814, 1931
MslI CAYNNNNRTG 1 cut(s) 693
MspA1I CMGCKG 1 cut(s) 1509
MspI CCGG 9 cut(s) 39, 195, 241, 266, 340, 385, 492, 732, 1566
MspR9I CCNGG 3 cut(s) 242, 443, 673
MunI CAATTG 1 cut(s) 993
Mva1269I GAATGC 1 cut(s) 1401
MvaI CCWGG 2 cut(s) 443, 673
MvnI CGCG 2 cut(s) 563, 759
MwoI GCNNNNNNNGC 9 cut(s) 521, 551, 560, 872, 908, 1398, 1739, 1898, 2132
NarI GGCGCC 1 cut(s) 263
NciI CCSGG 1 cut(s) 242
NcoI CCATGG 1 cut(s) 115
NdeII GATC 4 cut(s) 333, 662, 703, 754
NlaIV GGNNCC 6 cut(s) 199, 264, 447, 1504, 2052, 2053
NmuCI GTSAC 2 cut(s) 34, 1603
PagI TCATGA 1 cut(s) 1761
PcsI WCGNNNNNNNCGW 1 cut(s) 763
PctI GAATGC 1 cut(s) 1401
PdmI GAANNNNTTC 1 cut(s) 680
PfeI GAWTC 4 cut(s) 162, 747, 998, 1447
PfoI TCCNGGA 1 cut(s) 671
PinAI ACCGGT 1 cut(s) 731
PkrI GCNGC 9 cut(s) 77, 514, 526, 901, 1093, 1644, 1732, 1744, 1833
PleI GAGTC 3 cut(s) 41, 298, 529
PluTI GGCGCC 1 cut(s) 266
PpsI GAGTC 3 cut(s) 41, 298, 529
Ppu21I YACGTR 1 cut(s) 1432
PpuMI RGGWCCY 1 cut(s) 2051
PshBI ATTAAT 1 cut(s) 1008
Psp5II RGGWCCY 1 cut(s) 2051
Psp6I CCWGG 2 cut(s) 441, 671
PspGI CCWGG 2 cut(s) 441, 671
PspN4I GGNNCC 6 cut(s) 199, 264, 447, 1504, 2052, 2053
PspPI GGNCC 2 cut(s) 268, 2051
PspPPI RGGWCCY 1 cut(s) 2051
PstNI CAGNNNCTG 2 cut(s) 899, 1336
PsuI RGATCY 1 cut(s) 333
RsaI GTAC 4 cut(s) 810, 985, 1473, 1656
RsaNI GTAC 4 cut(s) 809, 984, 1472, 1655
RseI CAYNNNNRTG 1 cut(s) 693
SaqAI TTAA 5 cut(s) 1008, 1073, 1097, 1814, 1931
SatI GCNGC 9 cut(s) 76, 513, 525, 900, 1092, 1643, 1731, 1743, 1832
Sau3AI GATC 4 cut(s) 333, 662, 703, 754
Sau96I GGNCC 2 cut(s) 268, 2051
ScaI AGTACT 1 cut(s) 1656
SchI GAGTC 3 cut(s) 42, 298, 529
ScrFI CCNGG 3 cut(s) 242, 443, 673
SduI GDGCHC 5 cut(s) 435, 739, 868, 1809, 1903
SfaNI GCATC 5 cut(s) 26, 967, 1078, 2113, 2122
SfcI CTRYAG 2 cut(s) 12, 28
SfoI GGCGCC 1 cut(s) 264
SinI GGWCC 2 cut(s) 268, 2051
SmiMI CAYNNNNRTG 1 cut(s) 693
SmlI CTYRAG 2 cut(s) 1610, 1808
SmoI CTYRAG 2 cut(s) 1610, 1808
SnaBI TACGTA 1 cut(s) 1432
Sse9I AATT 9 cut(s) 380, 617, 775, 857, 993, 1009, 1267, 1353, 1872
SspDI GGCGCC 1 cut(s) 262
SspI AATATT 2 cut(s) 1028, 1929
SspMI CTAG 2 cut(s) 981, 1904
StyD4I CCNGG 3 cut(s) 240, 441, 671
StyI CCWWGG 4 cut(s) 115, 405, 1273, 1947
TaaI ACNGT 8 cut(s) 925, 933, 1021, 1213, 1586, 1628, 1654, 2119
TaiI ACGT 5 cut(s) 330, 1111, 1419, 1434, 1741
TaqI TCGA 5 cut(s) 20, 709, 724, 1597, 1735
TasI AATT 9 cut(s) 380, 617, 775, 857, 993, 1009, 1267, 1353, 1872
TatI WGTACW 2 cut(s) 983, 1654
TauI GCSGC 4 cut(s) 78, 515, 527, 1645
TfiI GAWTC 4 cut(s) 162, 747, 998, 1447
Tru1I TTAA 5 cut(s) 1008, 1073, 1097, 1814, 1931
Tru9I TTAA 5 cut(s) 1008, 1073, 1097, 1814, 1931
TscAI CASTG 3 cut(s) 938, 1848, 2009
TseFI GTSAC 2 cut(s) 34, 1603
TseI GCWGC 5 cut(s) 899, 1091, 1730, 1742, 1831
Tsp45I GTSAC 2 cut(s) 34, 1603
TspGWI ACGGA 2 cut(s) 41, 1451
TspRI CASTG 3 cut(s) 938, 1848, 2009
VneI GTGCAC 2 cut(s) 735, 1899
VpaK11BI GGWCC 2 cut(s) 268, 2051
VspI ATTAAT 1 cut(s) 1008
XapI RAATTY 3 cut(s) 380, 775, 857
XmiI GTMKAC 1 cut(s) 844
XmnI GAANNNNTTC 1 cut(s) 680
XspI CTAG 2 cut(s) 981, 1904
ZraI GACGTC 1 cut(s) 328
ZrmI AGTACT 1 cut(s) 1656
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.